EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015013198 (Gene tree)
Gene ID: 108942711
Gene Symbol: gar1
Alias: nola1|zgc:56086
Full Name: GAR1 ribonucleoprotein
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 3239 bases
Position: chrKV411250.1:1429217-1432455
Accession: 108942711
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015020523	Gar1	PF04410.14	1e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015020755	-	681	XM_018766181	ENSSFOP00015020523	226 (aa)	XP_018621697	-

Gene Model

Click here to download ENSSFOG00015013198's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015013198's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015013198	gar1	70	80.576	ENSAMEG00000004605	GAR1	53	89.908	Ailuropoda_melanoleuca
ENSSFOG00015013198	gar1	66	85.271	ENSACAG00000010031	GAR1	50	91.509	Anolis_carolinensis
ENSSFOG00015013198	gar1	69	77.477	ENSCHIG00000011049	-	61	78.704	Capra_hircus
ENSSFOG00015013198	gar1	54	62.602	ENSCSAVG00000006355	-	70	61.594	Ciona_savignyi
ENSSFOG00015013198	gar1	51	87.826	ENSCGRG00000010165	-	72	96.739	Cricetulus_griseus_crigri
ENSSFOG00015013198	gar1	77	52.672	ENSFCAG00000025841	-	51	57.798	Felis_catus
ENSSFOG00015013198	gar1	62	86.331	ENSHGLG00000000493	GAR1	72	96.364	Heterocephalus_glaber_female
ENSSFOG00015013198	gar1	50	88.393	ENSMICG00000003326	GAR1	50	89.908	Microcebus_murinus
ENSSFOG00015013198	gar1	68	84.848	MGP_CAROLIEiJ_G0025627	Gar1	70	96.364	Mus_caroli
ENSSFOG00015013198	gar1	71	80.851	ENSOANG00000003665	GAR1	63	74.286	Ornithorhynchus_anatinus
ENSSFOG00015013198	gar1	69	88.618	ENSORLG00000020583	gar1	62	89.431	Oryzias_latipes
ENSSFOG00015013198	gar1	68	88.525	ENSORLG00020008602	gar1	62	89.431	Oryzias_latipes_hni
ENSSFOG00015013198	gar1	65	92.241	ENSORLG00015017643	gar1	64	89.431	Oryzias_latipes_hsok
ENSSFOG00015013198	gar1	63	69.231	ENSRBIG00000042411	-	69	62.143	Rhinopithecus_bieti
ENSSFOG00015013198	gar1	63	69.231	ENSRROG00000044348	-	68	62.143	Rhinopithecus_roxellana
ENSSFOG00015013198	gar1	73	85.417	ENSSBOG00000024785	GAR1	50	90.826	Saimiri_boliviensis_boliviensis
ENSSFOG00015013198	gar1	62	82.734	ENSSPUG00000008707	GAR1	59	91.509	Sphenodon_punctatus