EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015013244 (Gene tree)
Gene ID: -
Gene Symbol: patz1
Alias: -
Full Name: POZ/BTB and AT hook containing zinc finger 1
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 14368 bases
Position: chrKV411284.1:206096-220463
Accession: 108920138
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015020595	zf-C2H2	PF00096.26	1e-25	1	4
ENSSFOP00015020595	zf-C2H2	PF00096.26	1e-25	2	4
ENSSFOP00015020595	zf-C2H2	PF00096.26	1e-25	3	4
ENSSFOP00015020595	zf-C2H2	PF00096.26	1e-25	4	4
ENSSFOP00015020595	zf-met	PF12874.7	8.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015020827	-	2133	XM_018728672	ENSSFOP00015020595	710 (aa)	XP_018584188	-

Gene Model

Click here to download ENSSFOG00015013244's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015013244's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015013244	patz1	50	36.697	ENSSFOG00015006108	-	58	37.198
ENSSFOG00015013244	patz1	57	40.719	ENSSFOG00015019818	-	73	41.916
ENSSFOG00015013244	patz1	50	39.759	ENSSFOG00015010829	-	73	39.759
ENSSFOG00015013244	patz1	57	35.329	ENSSFOG00015003121	znf668	84	35.329

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015013244	patz1	78	88.462	ENSG00000100105	PATZ1	79	88.462	Homo_sapiens
ENSSFOG00015013244	patz1	78	96.154	ENSAPOG00000018447	patz1	81	96.154	Acanthochromis_polyacanthus
ENSSFOG00015013244	patz1	78	80.788	ENSAMEG00000007074	PATZ1	73	80.788	Ailuropoda_melanoleuca
ENSSFOG00015013244	patz1	78	91.304	ENSACIG00000016779	patz1	79	91.304	Amphilophus_citrinellus
ENSSFOG00015013244	patz1	78	96.154	ENSAPEG00000013354	patz1	81	96.154	Amphiprion_percula
ENSSFOG00015013244	patz1	78	90.580	ENSATEG00000011260	patz1	76	90.580	Anabas_testudineus
ENSSFOG00015013244	patz1	67	89.474	ENSAPLG00000003934	PATZ1	68	89.474	Anas_platyrhynchos
ENSSFOG00015013244	patz1	78	88.462	ENSANAG00000029603	PATZ1	79	88.462	Aotus_nancymaae
ENSSFOG00015013244	patz1	78	97.436	ENSAMXG00000002273	patz1	80	97.436	Astyanax_mexicanus
ENSSFOG00015013244	patz1	78	88.462	ENSBTAG00000005478	PATZ1	79	88.462	Bos_taurus
ENSSFOG00015013244	patz1	78	88.462	ENSCJAG00000010978	PATZ1	79	88.462	Callithrix_jacchus
ENSSFOG00015013244	patz1	78	88.462	ENSCAFG00000013087	PATZ1	79	88.462	Canis_familiaris
ENSSFOG00015013244	patz1	78	88.462	ENSCHIG00000020203	PATZ1	79	88.462	Capra_hircus
ENSSFOG00015013244	patz1	78	88.462	ENSTSYG00000033183	PATZ1	79	88.462	Carlito_syrichta
ENSSFOG00015013244	patz1	78	88.462	ENSCCAG00000028772	PATZ1	79	88.462	Cebus_capucinus
ENSSFOG00015013244	patz1	78	88.462	ENSCATG00000006101	PATZ1	79	88.462	Cercocebus_atys
ENSSFOG00015013244	patz1	78	76.667	ENSCPBG00000011277	PATZ1	81	76.667	Chrysemys_picta_bellii
ENSSFOG00015013244	patz1	78	88.462	ENSCANG00000024972	PATZ1	79	88.462	Colobus_angolensis_palliatus
ENSSFOG00015013244	patz1	78	82.051	ENSCGRG00001004071	Patz1	71	82.051	Cricetulus_griseus_chok1gshd
ENSSFOG00015013244	patz1	72	88.462	ENSCGRG00000004814	Patz1	78	88.462	Cricetulus_griseus_crigri
ENSSFOG00015013244	patz1	64	89.952	ENSCSEG00000001385	patz1	65	89.952	Cynoglossus_semilaevis
ENSSFOG00015013244	patz1	78	96.795	ENSCVAG00000007684	patz1	83	96.795	Cyprinodon_variegatus
ENSSFOG00015013244	patz1	78	97.436	ENSDARG00000076584	patz1	82	97.436	Danio_rerio
ENSSFOG00015013244	patz1	69	80.788	ENSDNOG00000003183	PATZ1	70	80.788	Dasypus_novemcinctus
ENSSFOG00015013244	patz1	78	88.462	ENSDORG00000023834	Patz1	79	88.462	Dipodomys_ordii
ENSSFOG00015013244	patz1	78	88.462	ENSECAG00000025030	PATZ1	79	88.462	Equus_caballus
ENSSFOG00015013244	patz1	78	96.795	ENSELUG00000002333	patz1	82	96.795	Esox_lucius
ENSSFOG00015013244	patz1	78	88.462	ENSFCAG00000030253	PATZ1	79	88.462	Felis_catus
ENSSFOG00015013244	patz1	68	88.889	ENSFALG00000007450	PATZ1	69	88.889	Ficedula_albicollis
ENSSFOG00015013244	patz1	75	73.881	ENSFDAG00000005614	PATZ1	57	86.538	Fukomys_damarensis
ENSSFOG00015013244	patz1	78	96.795	ENSFHEG00000014755	patz1	82	96.795	Fundulus_heteroclitus
ENSSFOG00015013244	patz1	78	86.957	ENSGMOG00000001062	patz1	73	86.957	Gadus_morhua
ENSSFOG00015013244	patz1	78	67.262	ENSGALG00000006934	PATZ1	74	78.947	Gallus_gallus
ENSSFOG00015013244	patz1	78	96.795	ENSGAFG00000010053	patz1	84	96.795	Gambusia_affinis
ENSSFOG00015013244	patz1	67	92.857	ENSGAGG00000003214	PATZ1	77	92.857	Gopherus_agassizii
ENSSFOG00015013244	patz1	78	88.462	ENSGGOG00000017171	PATZ1	79	88.462	Gorilla_gorilla
ENSSFOG00015013244	patz1	78	95.513	ENSHCOG00000017644	patz1	74	95.513	Hippocampus_comes
ENSSFOG00015013244	patz1	78	91.304	ENSIPUG00000017653	patz1	77	91.304	Ictalurus_punctatus
ENSSFOG00015013244	patz1	78	88.462	ENSSTOG00000020707	PATZ1	79	88.462	Ictidomys_tridecemlineatus
ENSSFOG00015013244	patz1	78	87.821	ENSJJAG00000015259	Patz1	78	87.821	Jaculus_jaculus
ENSSFOG00015013244	patz1	62	90.431	ENSKMAG00000008157	patz1	72	90.431	Kryptolebias_marmoratus
ENSSFOG00015013244	patz1	78	76.351	ENSLAFG00000002317	PATZ1	52	79.803	Loxodonta_africana
ENSSFOG00015013244	patz1	78	88.462	ENSMFAG00000040968	PATZ1	79	88.462	Macaca_fascicularis
ENSSFOG00015013244	patz1	78	88.462	ENSMNEG00000037588	PATZ1	79	88.462	Macaca_nemestrina
ENSSFOG00015013244	patz1	78	88.462	ENSMLEG00000030938	PATZ1	79	88.462	Mandrillus_leucophaeus
ENSSFOG00015013244	patz1	78	96.795	ENSMAMG00000023652	patz1	81	96.795	Mastacembelus_armatus
ENSSFOG00015013244	patz1	67	57.794	ENSMGAG00000008439	PATZ1	68	78.947	Meleagris_gallopavo
ENSSFOG00015013244	patz1	78	88.462	ENSMAUG00000004129	Patz1	85	88.462	Mesocricetus_auratus
ENSSFOG00015013244	patz1	78	88.462	ENSMICG00000005430	PATZ1	79	88.462	Microcebus_murinus
ENSSFOG00015013244	patz1	78	88.462	ENSMOCG00000014488	Patz1	79	88.462	Microtus_ochrogaster
ENSSFOG00015013244	patz1	78	74.592	ENSMMOG00000021679	patz1	77	73.427	Mola_mola
ENSSFOG00015013244	patz1	78	96.154	ENSMALG00000021172	patz1	83	96.154	Monopterus_albus
ENSSFOG00015013244	patz1	78	88.462	MGP_CAROLIEiJ_G0016007	Patz1	79	88.462	Mus_caroli
ENSSFOG00015013244	patz1	78	88.462	ENSMUSG00000020453	Patz1	79	88.462	Mus_musculus
ENSSFOG00015013244	patz1	78	88.462	MGP_PahariEiJ_G0016884	Patz1	79	88.462	Mus_pahari
ENSSFOG00015013244	patz1	78	88.462	MGP_SPRETEiJ_G0016846	Patz1	79	88.462	Mus_spretus
ENSSFOG00015013244	patz1	78	88.462	ENSMLUG00000009942	PATZ1	79	88.462	Myotis_lucifugus
ENSSFOG00015013244	patz1	78	88.462	ENSNGAG00000010268	Patz1	79	88.462	Nannospalax_galili
ENSSFOG00015013244	patz1	78	91.304	ENSNBRG00000016032	patz1	80	91.304	Neolamprologus_brichardi
ENSSFOG00015013244	patz1	59	80.788	ENSMEUG00000016293	PATZ1	84	80.788	Notamacropus_eugenii
ENSSFOG00015013244	patz1	78	88.462	ENSODEG00000003589	PATZ1	79	88.462	Octodon_degus
ENSSFOG00015013244	patz1	78	96.154	ENSONIG00000004248	patz1	82	96.154	Oreochromis_niloticus
ENSSFOG00015013244	patz1	78	80.788	ENSOANG00000014654	PATZ1	80	80.788	Ornithorhynchus_anatinus
ENSSFOG00015013244	patz1	78	96.154	ENSORLG00020010937	patz1	80	96.154	Oryzias_latipes_hni
ENSSFOG00015013244	patz1	78	96.154	ENSORLG00015007396	patz1	82	96.154	Oryzias_latipes_hsok
ENSSFOG00015013244	patz1	78	96.154	ENSOMEG00000006636	patz1	84	96.154	Oryzias_melastigma
ENSSFOG00015013244	patz1	78	80.788	ENSOGAG00000027905	PATZ1	73	80.788	Otolemur_garnettii
ENSSFOG00015013244	patz1	78	88.462	ENSPPAG00000033227	PATZ1	79	88.462	Pan_paniscus
ENSSFOG00015013244	patz1	78	88.462	ENSPPRG00000001573	PATZ1	79	88.462	Panthera_pardus
ENSSFOG00015013244	patz1	67	88.525	ENSPTIG00000007937	PATZ1	62	86.154	Panthera_tigris_altaica
ENSSFOG00015013244	patz1	78	88.462	ENSPTRG00000014268	PATZ1	79	88.462	Pan_troglodytes
ENSSFOG00015013244	patz1	78	88.462	ENSPANG00000006821	PATZ1	78	88.462	Papio_anubis
ENSSFOG00015013244	patz1	78	94.928	ENSPKIG00000019584	patz1	82	94.928	Paramormyrops_kingsleyae
ENSSFOG00015013244	patz1	59	88.462	ENSPSIG00000011562	-	99	88.462	Pelodiscus_sinensis
ENSSFOG00015013244	patz1	78	88.462	ENSPEMG00000005321	Patz1	79	88.462	Peromyscus_maniculatus_bairdii
ENSSFOG00015013244	patz1	78	96.795	ENSPLAG00000010425	patz1	84	96.795	Poecilia_latipinna
ENSSFOG00015013244	patz1	78	96.795	ENSPMEG00000000255	patz1	93	89.855	Poecilia_mexicana
ENSSFOG00015013244	patz1	78	89.855	ENSPREG00000002440	patz1	62	89.855	Poecilia_reticulata
ENSSFOG00015013244	patz1	78	70.186	ENSPPYG00000011732	PATZ1	73	80.296	Pongo_abelii
ENSSFOG00015013244	patz1	78	88.462	ENSPCOG00000019729	PATZ1	79	88.462	Propithecus_coquereli
ENSSFOG00015013244	patz1	78	80.788	ENSPVAG00000001749	PATZ1	73	80.788	Pteropus_vampyrus
ENSSFOG00015013244	patz1	78	96.154	ENSPNYG00000013542	patz1	82	96.154	Pundamilia_nyererei
ENSSFOG00015013244	patz1	67	94.643	ENSPNAG00000017222	patz1	67	94.643	Pygocentrus_nattereri
ENSSFOG00015013244	patz1	78	88.462	ENSRBIG00000044231	PATZ1	79	88.462	Rhinopithecus_bieti
ENSSFOG00015013244	patz1	78	88.462	ENSRROG00000037155	PATZ1	79	88.462	Rhinopithecus_roxellana
ENSSFOG00015013244	patz1	78	88.462	ENSSBOG00000003894	PATZ1	79	88.462	Saimiri_boliviensis_boliviensis
ENSSFOG00015013244	patz1	76	76.667	ENSSPUG00000015298	PATZ1	77	78.469	Sphenodon_punctatus
ENSSFOG00015013244	patz1	67	91.071	ENSSSCG00000010027	PATZ1	75	91.071	Sus_scrofa
ENSSFOG00015013244	patz1	77	89.130	ENSTRUG00000015366	patz1	83	89.130	Takifugu_rubripes
ENSSFOG00015013244	patz1	78	80.788	ENSTTRG00000010279	PATZ1	73	80.788	Tursiops_truncatus
ENSSFOG00015013244	patz1	78	88.462	ENSUAMG00000015014	PATZ1	79	88.462	Ursus_americanus
ENSSFOG00015013244	patz1	78	96.795	ENSXMAG00000015531	patz1	93	90.580	Xiphophorus_maculatus