EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015013905 (Gene tree)
Gene ID: 108932418
Gene Symbol: prpf8
Alias: id:ibd1257|ik:tdsubc_2a9|im:7141966|tdsubc_2a9|wu:fb37c02|wu:fb73e06|xx:tdsubc_2a9|zgc:56504
Full Name: pre-mRNA processing factor 8
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 14328 bases
Position: chrKV410993.1:6086244-6100571
Accession: 108932418
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015021696	RRM_4	PF10598.9	4.3e-48	1	1
ENSSFOP00015021696	U5_2-snRNA_bdg	PF10597.9	8.4e-74	1	1
ENSSFOP00015021696	PRO8NT	PF08082.11	4.5e-87	1	1
ENSSFOP00015021696	U6-snRNA_bdg	PF10596.9	2.1e-89	1	1
ENSSFOP00015021696	PROCN	PF08083.11	4.7e-236	1	1
ENSSFOP00015021696	PRP8_domainIV	PF12134.8	4.9e-130	1	1
ENSSFOP00015021696	PROCT	PF08084.11	3.2e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015021938	-	7029	XM_018748807	ENSSFOP00015021696	2342 (aa)	XP_018604323	-

Gene Model

Click here to download ENSSFOG00015013905's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015013905's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015013905	prpf8	100	97.523	ENSG00000174231	PRPF8	100	97.523	Homo_sapiens
ENSSFOG00015013905	prpf8	100	98.762	ENSAPOG00000010079	prpf8	100	98.762	Acanthochromis_polyacanthus
ENSSFOG00015013905	prpf8	100	97.523	ENSAMEG00000007940	PRPF8	100	97.523	Ailuropoda_melanoleuca
ENSSFOG00015013905	prpf8	100	96.943	ENSACIG00000018280	prpf8	100	96.943	Amphilophus_citrinellus
ENSSFOG00015013905	prpf8	100	98.719	ENSAOCG00000010725	prpf8	100	98.719	Amphiprion_ocellaris
ENSSFOG00015013905	prpf8	100	98.719	ENSAPEG00000014397	prpf8	100	98.719	Amphiprion_percula
ENSSFOG00015013905	prpf8	100	98.036	ENSATEG00000010062	prpf8	100	98.036	Anabas_testudineus
ENSSFOG00015013905	prpf8	96	98.221	ENSAPLG00000010357	PRPF8	100	98.221	Anas_platyrhynchos
ENSSFOG00015013905	prpf8	82	96.225	ENSACAG00000014784	PRPF8	99	96.225	Anolis_carolinensis
ENSSFOG00015013905	prpf8	100	97.523	ENSANAG00000032629	PRPF8	100	97.523	Aotus_nancymaae
ENSSFOG00015013905	prpf8	100	98.340	ENSACLG00000020858	prpf8	100	98.340	Astatotilapia_calliptera
ENSSFOG00015013905	prpf8	100	98.506	ENSAMXG00000020291	prpf8	100	98.506	Astyanax_mexicanus
ENSSFOG00015013905	prpf8	100	97.523	ENSBTAG00000011488	PRPF8	100	97.523	Bos_taurus
ENSSFOG00015013905	prpf8	99	86.532	WBGene00004187	prp-8	99	86.455	Caenorhabditis_elegans
ENSSFOG00015013905	prpf8	100	97.523	ENSCJAG00000001911	PRPF8	100	97.523	Callithrix_jacchus
ENSSFOG00015013905	prpf8	100	97.523	ENSCAFG00000019221	PRPF8	100	97.523	Canis_familiaris
ENSSFOG00015013905	prpf8	96	98.215	ENSCAFG00020009943	PRPF8	100	98.215	Canis_lupus_dingo
ENSSFOG00015013905	prpf8	100	97.523	ENSCHIG00000017499	PRPF8	100	97.523	Capra_hircus
ENSSFOG00015013905	prpf8	100	97.523	ENSTSYG00000014120	PRPF8	100	97.523	Carlito_syrichta
ENSSFOG00015013905	prpf8	96	95.991	ENSCAPG00000009459	PRPF8	99	95.991	Cavia_aperea
ENSSFOG00015013905	prpf8	100	97.523	ENSCPOG00000010379	PRPF8	100	97.523	Cavia_porcellus
ENSSFOG00015013905	prpf8	100	97.523	ENSCCAG00000031983	-	100	97.523	Cebus_capucinus
ENSSFOG00015013905	prpf8	100	97.523	ENSCATG00000038595	PRPF8	100	97.523	Cercocebus_atys
ENSSFOG00015013905	prpf8	100	97.523	ENSCLAG00000004388	PRPF8	100	97.523	Chinchilla_lanigera
ENSSFOG00015013905	prpf8	100	97.523	ENSCSAG00000013929	PRPF8	100	97.523	Chlorocebus_sabaeus
ENSSFOG00015013905	prpf8	81	97.333	ENSCHOG00000008590	PRPF8	88	97.333	Choloepus_hoffmanni
ENSSFOG00015013905	prpf8	100	97.566	ENSCPBG00000020409	PRPF8	100	97.566	Chrysemys_picta_bellii
ENSSFOG00015013905	prpf8	98	92.993	ENSCSAVG00000007825	-	100	91.366	Ciona_savignyi
ENSSFOG00015013905	prpf8	100	97.523	ENSCANG00000043088	PRPF8	100	97.523	Colobus_angolensis_palliatus
ENSSFOG00015013905	prpf8	73	99.409	ENSCGRG00000005129	Prpf8	100	99.409	Cricetulus_griseus_crigri
ENSSFOG00015013905	prpf8	100	98.591	ENSCSEG00000007905	prpf8	100	98.591	Cynoglossus_semilaevis
ENSSFOG00015013905	prpf8	100	98.420	ENSDARG00000026180	prpf8	100	98.420	Danio_rerio
ENSSFOG00015013905	prpf8	93	97.659	ENSDNOG00000018471	PRPF8	99	97.659	Dasypus_novemcinctus
ENSSFOG00015013905	prpf8	84	96.045	ENSDORG00000006185	Prpf8	96	96.045	Dipodomys_ordii
ENSSFOG00015013905	prpf8	99	91.481	FBgn0033688	Prp8	98	90.844	Drosophila_melanogaster
ENSSFOG00015013905	prpf8	100	92.143	ENSETEG00000017592	PRPF8	100	92.143	Echinops_telfairi
ENSSFOG00015013905	prpf8	99	93.262	ENSEBUG00000006548	prpf8	99	93.262	Eptatretus_burgeri
ENSSFOG00015013905	prpf8	100	97.523	ENSEASG00005009514	PRPF8	99	98.534	Equus_asinus_asinus
ENSSFOG00015013905	prpf8	97	98.242	ENSECAG00000021318	PRPF8	100	98.242	Equus_caballus
ENSSFOG00015013905	prpf8	67	98.519	ENSEEUG00000012120	-	67	98.519	Erinaceus_europaeus
ENSSFOG00015013905	prpf8	98	97.513	ENSELUG00000007120	prpf8	99	97.513	Esox_lucius
ENSSFOG00015013905	prpf8	100	97.523	ENSFCAG00000006297	PRPF8	100	97.523	Felis_catus
ENSSFOG00015013905	prpf8	100	97.609	ENSFALG00000006628	PRPF8	100	97.609	Ficedula_albicollis
ENSSFOG00015013905	prpf8	100	97.523	ENSFDAG00000004711	PRPF8	100	97.523	Fukomys_damarensis
ENSSFOG00015013905	prpf8	100	98.463	ENSFHEG00000021084	prpf8	100	98.463	Fundulus_heteroclitus
ENSSFOG00015013905	prpf8	100	96.199	ENSGMOG00000002028	prpf8	99	96.199	Gadus_morhua
ENSSFOG00015013905	prpf8	100	97.694	ENSGALG00000002943	PRPF8	100	97.694	Gallus_gallus
ENSSFOG00015013905	prpf8	100	98.210	ENSGAFG00000010337	prpf8	100	98.210	Gambusia_affinis
ENSSFOG00015013905	prpf8	100	98.506	ENSGACG00000008504	prpf8	100	98.377	Gasterosteus_aculeatus
ENSSFOG00015013905	prpf8	100	97.609	ENSGAGG00000008350	PRPF8	100	97.609	Gopherus_agassizii
ENSSFOG00015013905	prpf8	100	97.523	ENSGGOG00000005516	PRPF8	100	97.523	Gorilla_gorilla
ENSSFOG00015013905	prpf8	100	98.292	ENSHBUG00000016192	prpf8	100	98.292	Haplochromis_burtoni
ENSSFOG00015013905	prpf8	100	97.523	ENSHGLG00000012029	PRPF8	100	97.523	Heterocephalus_glaber_female
ENSSFOG00015013905	prpf8	100	97.523	ENSHGLG00100016494	PRPF8	100	97.523	Heterocephalus_glaber_male
ENSSFOG00015013905	prpf8	100	98.377	ENSHCOG00000016414	prpf8	100	98.377	Hippocampus_comes
ENSSFOG00015013905	prpf8	100	98.463	ENSIPUG00000023230	prpf8	100	98.463	Ictalurus_punctatus
ENSSFOG00015013905	prpf8	100	97.523	ENSSTOG00000005128	PRPF8	100	97.523	Ictidomys_tridecemlineatus
ENSSFOG00015013905	prpf8	100	95.389	ENSJJAG00000021159	Prpf8	100	95.389	Jaculus_jaculus
ENSSFOG00015013905	prpf8	100	98.420	ENSKMAG00000016118	prpf8	100	98.420	Kryptolebias_marmoratus
ENSSFOG00015013905	prpf8	100	98.420	ENSLBEG00000026903	prpf8	100	98.420	Labrus_bergylta
ENSSFOG00015013905	prpf8	95	95.412	ENSLACG00000010479	PRPF8	99	98.309	Latimeria_chalumnae
ENSSFOG00015013905	prpf8	99	98.464	ENSLOCG00000005409	prpf8	99	98.464	Lepisosteus_oculatus
ENSSFOG00015013905	prpf8	100	97.523	ENSLAFG00000015445	PRPF8	100	97.523	Loxodonta_africana
ENSSFOG00015013905	prpf8	100	97.523	ENSMFAG00000039995	PRPF8	100	97.523	Macaca_fascicularis
ENSSFOG00015013905	prpf8	100	97.523	ENSMMUG00000004820	PRPF8	100	97.523	Macaca_mulatta
ENSSFOG00015013905	prpf8	100	97.523	ENSMNEG00000035713	PRPF8	100	97.523	Macaca_nemestrina
ENSSFOG00015013905	prpf8	100	97.523	ENSMLEG00000037937	PRPF8	100	97.523	Mandrillus_leucophaeus
ENSSFOG00015013905	prpf8	100	98.804	ENSMAMG00000008919	prpf8	100	98.804	Mastacembelus_armatus
ENSSFOG00015013905	prpf8	100	98.340	ENSMZEG00005015073	prpf8	100	98.340	Maylandia_zebra
ENSSFOG00015013905	prpf8	100	97.694	ENSMGAG00000004769	PRPF8	100	97.694	Meleagris_gallopavo
ENSSFOG00015013905	prpf8	100	97.523	ENSMICG00000010320	PRPF8	100	97.523	Microcebus_murinus
ENSSFOG00015013905	prpf8	100	97.523	ENSMOCG00000016838	Prpf8	100	97.523	Microtus_ochrogaster
ENSSFOG00015013905	prpf8	100	98.249	ENSMMOG00000011887	prpf8	100	98.249	Mola_mola
ENSSFOG00015013905	prpf8	100	97.438	ENSMODG00000010480	PRPF8	100	97.438	Monodelphis_domestica
ENSSFOG00015013905	prpf8	97	98.628	ENSMALG00000003558	prpf8	100	98.628	Monopterus_albus
ENSSFOG00015013905	prpf8	100	97.481	MGP_CAROLIEiJ_G0016740	Prpf8	100	97.481	Mus_caroli
ENSSFOG00015013905	prpf8	100	97.481	ENSMUSG00000020850	Prpf8	100	97.481	Mus_musculus
ENSSFOG00015013905	prpf8	100	97.438	MGP_PahariEiJ_G0017877	Prpf8	100	97.438	Mus_pahari
ENSSFOG00015013905	prpf8	100	97.481	MGP_SPRETEiJ_G0017583	Prpf8	100	97.481	Mus_spretus
ENSSFOG00015013905	prpf8	100	97.523	ENSMPUG00000013227	PRPF8	100	97.523	Mustela_putorius_furo
ENSSFOG00015013905	prpf8	100	97.399	ENSMLUG00000002666	PRPF8	100	97.399	Myotis_lucifugus
ENSSFOG00015013905	prpf8	100	95.773	ENSNGAG00000005305	Prpf8	100	95.773	Nannospalax_galili
ENSSFOG00015013905	prpf8	100	98.383	ENSNBRG00000013127	prpf8	100	98.383	Neolamprologus_brichardi
ENSSFOG00015013905	prpf8	97	96.885	ENSNLEG00000000897	PRPF8	98	96.885	Nomascus_leucogenys
ENSSFOG00015013905	prpf8	98	96.306	ENSMEUG00000015999	PRPF8	100	96.306	Notamacropus_eugenii
ENSSFOG00015013905	prpf8	100	95.773	ENSOPRG00000003102	PRPF8	100	95.773	Ochotona_princeps
ENSSFOG00015013905	prpf8	100	97.523	ENSODEG00000008468	PRPF8	100	97.523	Octodon_degus
ENSSFOG00015013905	prpf8	100	98.340	ENSONIG00000008153	prpf8	100	98.340	Oreochromis_niloticus
ENSSFOG00015013905	prpf8	82	99.252	ENSOANG00000004250	PRPF8	97	99.252	Ornithorhynchus_anatinus
ENSSFOG00015013905	prpf8	100	97.523	ENSOCUG00000000081	PRPF8	100	97.523	Oryctolagus_cuniculus
ENSSFOG00015013905	prpf8	100	97.918	ENSORLG00000008036	prpf8	100	97.918	Oryzias_latipes
ENSSFOG00015013905	prpf8	100	97.877	ENSORLG00020021070	prpf8	100	97.877	Oryzias_latipes_hni
ENSSFOG00015013905	prpf8	100	97.918	ENSORLG00015002340	prpf8	100	97.918	Oryzias_latipes_hsok
ENSSFOG00015013905	prpf8	100	96.262	ENSOMEG00000016866	prpf8	100	96.262	Oryzias_melastigma
ENSSFOG00015013905	prpf8	100	97.399	ENSOARG00000013312	PRPF8	100	97.399	Ovis_aries
ENSSFOG00015013905	prpf8	100	97.523	ENSPPAG00000042753	PRPF8	100	97.523	Pan_paniscus
ENSSFOG00015013905	prpf8	100	97.523	ENSPPRG00000008746	PRPF8	100	97.523	Panthera_pardus
ENSSFOG00015013905	prpf8	100	97.438	ENSPTIG00000019200	PRPF8	100	97.438	Panthera_tigris_altaica
ENSSFOG00015013905	prpf8	100	97.523	ENSPTRG00000039576	PRPF8	100	97.523	Pan_troglodytes
ENSSFOG00015013905	prpf8	98	98.219	ENSPANG00000024607	PRPF8	98	98.219	Papio_anubis
ENSSFOG00015013905	prpf8	100	98.849	ENSPKIG00000011201	prpf8	100	98.849	Paramormyrops_kingsleyae
ENSSFOG00015013905	prpf8	100	97.523	ENSPSIG00000013393	PRPF8	100	97.523	Pelodiscus_sinensis
ENSSFOG00015013905	prpf8	100	97.523	ENSPEMG00000021699	Prpf8	100	97.523	Peromyscus_maniculatus_bairdii
ENSSFOG00015013905	prpf8	96	93.764	ENSPMAG00000005438	prpf8	100	93.808	Petromyzon_marinus
ENSSFOG00015013905	prpf8	100	97.438	ENSPCIG00000022603	PRPF8	100	98.126	Phascolarctos_cinereus
ENSSFOG00015013905	prpf8	100	98.049	ENSPFOG00000007005	prpf8	100	98.049	Poecilia_formosa
ENSSFOG00015013905	prpf8	100	97.096	ENSPLAG00000020777	prpf8	100	97.096	Poecilia_latipinna
ENSSFOG00015013905	prpf8	100	98.049	ENSPMEG00000004051	prpf8	100	98.049	Poecilia_mexicana
ENSSFOG00015013905	prpf8	100	98.463	ENSPREG00000021902	prpf8	100	98.463	Poecilia_reticulata
ENSSFOG00015013905	prpf8	100	97.523	ENSPPYG00000007777	PRPF8	100	97.523	Pongo_abelii
ENSSFOG00015013905	prpf8	90	97.030	ENSPCAG00000008938	PRPF8	90	97.030	Procavia_capensis
ENSSFOG00015013905	prpf8	100	97.523	ENSPCOG00000015182	PRPF8	100	97.523	Propithecus_coquereli
ENSSFOG00015013905	prpf8	93	98.614	ENSPVAG00000002134	PRPF8	93	98.614	Pteropus_vampyrus
ENSSFOG00015013905	prpf8	100	98.292	ENSPNYG00000016356	prpf8	100	98.292	Pundamilia_nyererei
ENSSFOG00015013905	prpf8	100	98.719	ENSPNAG00000009247	prpf8	100	98.719	Pygocentrus_nattereri
ENSSFOG00015013905	prpf8	100	97.481	ENSRNOG00000003495	Prpf8	100	97.481	Rattus_norvegicus
ENSSFOG00015013905	prpf8	100	97.523	ENSRBIG00000031219	PRPF8	100	97.769	Rhinopithecus_bieti
ENSSFOG00015013905	prpf8	100	97.523	ENSRROG00000038014	PRPF8	100	97.769	Rhinopithecus_roxellana
ENSSFOG00015013905	prpf8	98	62.559	YHR165C	PRP8	95	62.645	Saccharomyces_cerevisiae
ENSSFOG00015013905	prpf8	100	97.523	ENSSBOG00000029717	PRPF8	100	97.523	Saimiri_boliviensis_boliviensis
ENSSFOG00015013905	prpf8	100	97.395	ENSSHAG00000006167	PRPF8	100	97.395	Sarcophilus_harrisii
ENSSFOG00015013905	prpf8	100	98.377	ENSSMAG00000017736	prpf8	100	98.377	Scophthalmus_maximus
ENSSFOG00015013905	prpf8	100	98.676	ENSSDUG00000003029	prpf8	100	98.676	Seriola_dumerili
ENSSFOG00015013905	prpf8	68	99.625	ENSSLDG00000017096	prpf8	100	99.625	Seriola_lalandi_dorsalis
ENSSFOG00015013905	prpf8	87	94.553	ENSSARG00000002892	PRPF8	87	94.553	Sorex_araneus
ENSSFOG00015013905	prpf8	100	97.438	ENSSPUG00000007463	PRPF8	100	97.438	Sphenodon_punctatus
ENSSFOG00015013905	prpf8	100	98.164	ENSSPAG00000015639	prpf8	100	98.164	Stegastes_partitus
ENSSFOG00015013905	prpf8	100	97.523	ENSSSCG00000017817	PRPF8	100	97.523	Sus_scrofa
ENSSFOG00015013905	prpf8	100	97.609	ENSTGUG00000005648	-	100	97.609	Taeniopygia_guttata
ENSSFOG00015013905	prpf8	51	98.778	ENSTGUG00000015597	-	95	98.778	Taeniopygia_guttata
ENSSFOG00015013905	prpf8	100	98.292	ENSTRUG00000015906	prpf8	100	98.292	Takifugu_rubripes
ENSSFOG00015013905	prpf8	95	99.343	ENSTNIG00000003460	prpf8	99	99.343	Tetraodon_nigroviridis
ENSSFOG00015013905	prpf8	93	98.911	ENSTBEG00000006431	PRPF8	93	98.911	Tupaia_belangeri
ENSSFOG00015013905	prpf8	100	96.926	ENSTTRG00000006869	PRPF8	100	96.926	Tursiops_truncatus
ENSSFOG00015013905	prpf8	54	96.130	ENSUAMG00000015644	-	96	96.130	Ursus_americanus
ENSSFOG00015013905	prpf8	100	97.267	ENSUMAG00000009385	PRPF8	100	97.267	Ursus_maritimus
ENSSFOG00015013905	prpf8	71	98.621	ENSVPAG00000006063	-	71	98.621	Vicugna_pacos
ENSSFOG00015013905	prpf8	100	97.523	ENSVVUG00000021695	PRPF8	99	97.523	Vulpes_vulpes
ENSSFOG00015013905	prpf8	100	97.439	ENSXETG00000022259	prpf8	100	97.439	Xenopus_tropicalis
ENSSFOG00015013905	prpf8	100	98.506	ENSXCOG00000012775	prpf8	100	98.506	Xiphophorus_couchianus
ENSSFOG00015013905	prpf8	100	98.463	ENSXMAG00000008505	prpf8	100	98.463	Xiphophorus_maculatus