EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015014134 (Gene tree)
Gene ID: 108941957
Gene Symbol: r3hdm1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 54666 bases
Position: chrKV411234.1:1506307-1560972
Accession: 108941957
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015022265	R3H	PF01424.22	1.4e-12	1	1
ENSSFOP00015022227	R3H	PF01424.22	1.5e-12	1	1
ENSSFOP00015022190	R3H	PF01424.22	1.5e-12	1	1
ENSSFOP00015022034	R3H	PF01424.22	1.5e-12	1	1
ENSSFOP00015022313	R3H	PF01424.22	1.5e-12	1	1
ENSSFOP00015022085	R3H	PF01424.22	1.6e-12	1	1
ENSSFOP00015022147	R3H	PF01424.22	1.6e-12	1	1
ENSSFOP00015021935	R3H	PF01424.22	1.6e-12	1	1
ENSSFOP00015021977	R3H	PF01424.22	1.6e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015022281	-	4917	XM_018764902	ENSSFOP00015022034	1076 (aa)	XP_018620418	-
ENSSFOT00015022331	-	4975	-	ENSSFOP00015022085	1096 (aa)	-	-
ENSSFOT00015022560	-	3171	-	ENSSFOP00015022313	1056 (aa)	-	-
ENSSFOT00015022475	-	4888	XM_018764903	ENSSFOP00015022227	1067 (aa)	XP_018620419	-
ENSSFOT00015022436	-	4930	-	ENSSFOP00015022190	1081 (aa)	-	-
ENSSFOT00015022512	-	4753	-	ENSSFOP00015022265	1022 (aa)	-	-
ENSSFOT00015022223	-	5019	XM_018764896	ENSSFOP00015021977	1110 (aa)	XP_018620412	A0A1W5B3B6
ENSSFOT00015022393	-	4963	XM_018764900	ENSSFOP00015022147	1092 (aa)	XP_018620416	-
ENSSFOT00015022181	-	4953	XM_018764895	ENSSFOP00015021935	1110 (aa)	XP_018620411	A0A1W5B3B6

Gene Model

Click here to download ENSSFOG00015014134's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015014134's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015014134	r3hdm1	65	47.051	ENSSFOG00015021262	ARPP21	95	45.856
ENSSFOG00015014134	r3hdm1	79	66.768	ENSSFOG00015011219	r3hdm2	58	46.182
ENSSFOG00015014134	r3hdm1	100	73.105	ENSSFOG00015019851	-	100	70.325

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015014134	r3hdm1	100	70.631	ENSG00000048991	R3HDM1	92	86.765	Homo_sapiens
ENSSFOG00015014134	r3hdm1	89	64.792	ENSAPOG00000020850	r3hdm1	84	72.611	Acanthochromis_polyacanthus
ENSSFOG00015014134	r3hdm1	100	70.874	ENSAMEG00000014886	R3HDM1	100	60.784	Ailuropoda_melanoleuca
ENSSFOG00015014134	r3hdm1	88	64.548	ENSAOCG00000005192	r3hdm1	92	65.281	Amphiprion_ocellaris
ENSSFOG00015014134	r3hdm1	78	73.754	ENSAPEG00000016108	r3hdm1	85	74.751	Amphiprion_percula
ENSSFOG00015014134	r3hdm1	79	71.519	ENSATEG00000000232	r3hdm1	87	72.468	Anabas_testudineus
ENSSFOG00015014134	r3hdm1	100	70.388	ENSAPLG00000015231	R3HDM1	93	69.575	Anas_platyrhynchos
ENSSFOG00015014134	r3hdm1	100	70.388	ENSACAG00000001676	R3HDM1	93	70.460	Anolis_carolinensis
ENSSFOG00015014134	r3hdm1	100	70.631	ENSANAG00000035334	R3HDM1	100	72.011	Aotus_nancymaae
ENSSFOG00015014134	r3hdm1	81	60.539	ENSACLG00000027282	r3hdm1	91	61.275	Astatotilapia_calliptera
ENSSFOG00015014134	r3hdm1	100	78.780	ENSAMXG00000012861	R3HDM1	100	78.780	Astyanax_mexicanus
ENSSFOG00015014134	r3hdm1	94	79.412	ENSAMXG00000003536	r3hdm1	93	78.963	Astyanax_mexicanus
ENSSFOG00015014134	r3hdm1	52	55.242	ENSAMXG00000020587	arpp21	84	55.242	Astyanax_mexicanus
ENSSFOG00015014134	r3hdm1	100	70.773	ENSBTAG00000013302	R3HDM1	93	70.843	Bos_taurus
ENSSFOG00015014134	r3hdm1	100	70.631	ENSCJAG00000011718	R3HDM1	89	76.435	Callithrix_jacchus
ENSSFOG00015014134	r3hdm1	100	70.874	ENSCAFG00000005075	R3HDM1	93	70.944	Canis_familiaris
ENSSFOG00015014134	r3hdm1	100	70.874	ENSCAFG00020016119	R3HDM1	93	70.944	Canis_lupus_dingo
ENSSFOG00015014134	r3hdm1	100	70.531	ENSCHIG00000020851	R3HDM1	93	70.602	Capra_hircus
ENSSFOG00015014134	r3hdm1	100	69.175	ENSCPOG00000012784	R3HDM1	100	68.836	Cavia_porcellus
ENSSFOG00015014134	r3hdm1	100	70.290	ENSCCAG00000027199	R3HDM1	89	77.882	Cebus_capucinus
ENSSFOG00015014134	r3hdm1	100	70.388	ENSCATG00000023642	R3HDM1	89	77.882	Cercocebus_atys
ENSSFOG00015014134	r3hdm1	100	69.903	ENSCLAG00000007962	R3HDM1	100	69.863	Chinchilla_lanigera
ENSSFOG00015014134	r3hdm1	100	70.388	ENSCSAG00000016356	R3HDM1	93	70.460	Chlorocebus_sabaeus
ENSSFOG00015014134	r3hdm1	77	81.818	ENSCHOG00000013638	R3HDM1	81	71.111	Choloepus_hoffmanni
ENSSFOG00015014134	r3hdm1	87	83.456	ENSCPBG00000009645	R3HDM1	100	83.456	Chrysemys_picta_bellii
ENSSFOG00015014134	r3hdm1	100	70.773	ENSCANG00000034748	R3HDM1	93	70.843	Colobus_angolensis_palliatus
ENSSFOG00015014134	r3hdm1	99	69.660	ENSCGRG00001012357	R3hdm1	90	69.734	Cricetulus_griseus_chok1gshd
ENSSFOG00015014134	r3hdm1	100	69.660	ENSCGRG00000012080	R3hdm1	100	70.205	Cricetulus_griseus_crigri
ENSSFOG00015014134	r3hdm1	82	67.826	ENSCSEG00000008944	r3hdm1	84	72.575	Cynoglossus_semilaevis
ENSSFOG00015014134	r3hdm1	78	73.422	ENSCVAG00000007582	r3hdm1	85	74.419	Cyprinodon_variegatus
ENSSFOG00015014134	r3hdm1	60	48.837	ENSDARG00000061081	arpp21	85	54.348	Danio_rerio
ENSSFOG00015014134	r3hdm1	100	65.301	ENSDNOG00000000771	R3HDM1	100	58.624	Dasypus_novemcinctus
ENSSFOG00015014134	r3hdm1	93	68.932	ENSETEG00000013606	R3HDM1	90	69.976	Echinops_telfairi
ENSSFOG00015014134	r3hdm1	66	39.071	ENSEBUG00000014746	arpp21	98	41.417	Eptatretus_burgeri
ENSSFOG00015014134	r3hdm1	100	70.874	ENSEASG00005007392	R3HDM1	100	70.874	Equus_asinus_asinus
ENSSFOG00015014134	r3hdm1	100	70.874	ENSECAG00000019114	R3HDM1	100	70.874	Equus_caballus
ENSSFOG00015014134	r3hdm1	76	62.476	ENSEEUG00000012589	R3HDM1	74	63.035	Erinaceus_europaeus
ENSSFOG00015014134	r3hdm1	93	75.460	ENSELUG00000014413	r3hdm1	89	75.460	Esox_lucius
ENSSFOG00015014134	r3hdm1	86	76.877	ENSELUG00000004909	R3HDM1	90	76.716	Esox_lucius
ENSSFOG00015014134	r3hdm1	100	70.874	ENSFCAG00000027113	R3HDM1	100	70.874	Felis_catus
ENSSFOG00015014134	r3hdm1	93	59.766	ENSFALG00000013731	R3HDM1	87	69.186	Ficedula_albicollis
ENSSFOG00015014134	r3hdm1	100	71.117	ENSFDAG00000016478	R3HDM1	100	71.918	Fukomys_damarensis
ENSSFOG00015014134	r3hdm1	88	63.415	ENSFHEG00000018713	r3hdm1	90	70.517	Fundulus_heteroclitus
ENSSFOG00015014134	r3hdm1	65	72.784	ENSGMOG00000006042	-	81	70.690	Gadus_morhua
ENSSFOG00015014134	r3hdm1	100	57.285	ENSGALG00000012246	R3HDM1	99	78.425	Gallus_gallus
ENSSFOG00015014134	r3hdm1	90	49.706	ENSGAFG00000006203	r3hdm1	100	50.740	Gambusia_affinis
ENSSFOG00015014134	r3hdm1	86	70.349	ENSGACG00000014925	r3hdm1	96	71.221	Gasterosteus_aculeatus
ENSSFOG00015014134	r3hdm1	100	70.531	ENSGAGG00000007840	R3HDM1	96	70.123	Gopherus_agassizii
ENSSFOG00015014134	r3hdm1	100	70.631	ENSGGOG00000008156	R3HDM1	89	78.193	Gorilla_gorilla
ENSSFOG00015014134	r3hdm1	100	70.803	ENSHGLG00000015718	R3HDM1	100	71.134	Heterocephalus_glaber_female
ENSSFOG00015014134	r3hdm1	100	46.721	ENSHGLG00100015374	-	100	48.223	Heterocephalus_glaber_male
ENSSFOG00015014134	r3hdm1	100	70.803	ENSHGLG00100003184	-	100	71.134	Heterocephalus_glaber_male
ENSSFOG00015014134	r3hdm1	77	71.724	ENSHCOG00000013366	r3hdm1	84	72.759	Hippocampus_comes
ENSSFOG00015014134	r3hdm1	89	69.827	ENSIPUG00000001676	R3HDM1	100	77.000	Ictalurus_punctatus
ENSSFOG00015014134	r3hdm1	60	40.390	ENSIPUG00000020552	arpp21	92	34.916	Ictalurus_punctatus
ENSSFOG00015014134	r3hdm1	95	60.405	ENSIPUG00000013629	r3hdm1	94	77.199	Ictalurus_punctatus
ENSSFOG00015014134	r3hdm1	100	71.117	ENSSTOG00000007572	R3HDM1	100	71.575	Ictidomys_tridecemlineatus
ENSSFOG00015014134	r3hdm1	94	79.772	ENSLACG00000005334	R3HDM1	100	73.317	Latimeria_chalumnae
ENSSFOG00015014134	r3hdm1	100	70.099	ENSLOCG00000001641	r3hdm1	100	70.547	Lepisosteus_oculatus
ENSSFOG00015014134	r3hdm1	100	71.359	ENSLAFG00000009065	R3HDM1	94	77.874	Loxodonta_africana
ENSSFOG00015014134	r3hdm1	100	70.631	ENSMFAG00000030331	R3HDM1	89	78.193	Macaca_fascicularis
ENSSFOG00015014134	r3hdm1	100	70.631	ENSMMUG00000009844	R3HDM1	89	78.193	Macaca_mulatta
ENSSFOG00015014134	r3hdm1	100	70.631	ENSMNEG00000027793	R3HDM1	89	78.193	Macaca_nemestrina
ENSSFOG00015014134	r3hdm1	100	70.631	ENSMLEG00000043189	R3HDM1	89	78.193	Mandrillus_leucophaeus
ENSSFOG00015014134	r3hdm1	88	64.548	ENSMAMG00000004532	r3hdm1	86	72.611	Mastacembelus_armatus
ENSSFOG00015014134	r3hdm1	88	65.037	ENSMZEG00005003157	r3hdm1	92	65.770	Maylandia_zebra
ENSSFOG00015014134	r3hdm1	99	70.098	ENSMGAG00000012461	R3HDM1	100	62.455	Meleagris_gallopavo
ENSSFOG00015014134	r3hdm1	100	69.903	ENSMAUG00000010315	R3hdm1	100	70.205	Mesocricetus_auratus
ENSSFOG00015014134	r3hdm1	95	56.730	ENSMICG00000042655	-	99	71.892	Microcebus_murinus
ENSSFOG00015014134	r3hdm1	100	70.773	ENSMICG00000005900	-	100	72.162	Microcebus_murinus
ENSSFOG00015014134	r3hdm1	90	62.121	ENSMODG00000000923	R3HDM1	97	62.027	Monodelphis_domestica
ENSSFOG00015014134	r3hdm1	99	64.303	ENSMALG00000009000	r3hdm1	91	65.037	Monopterus_albus
ENSSFOG00015014134	r3hdm1	100	70.073	MGP_CAROLIEiJ_G0014543	R3hdm1	100	70.790	Mus_caroli
ENSSFOG00015014134	r3hdm1	100	70.073	ENSMUSG00000056211	R3hdm1	100	70.790	Mus_musculus
ENSSFOG00015014134	r3hdm1	100	70.073	MGP_PahariEiJ_G0027779	R3hdm1	100	70.790	Mus_pahari
ENSSFOG00015014134	r3hdm1	100	70.073	MGP_SPRETEiJ_G0015350	R3hdm1	100	70.790	Mus_spretus
ENSSFOG00015014134	r3hdm1	100	70.874	ENSMPUG00000002412	R3HDM1	93	70.944	Mustela_putorius_furo
ENSSFOG00015014134	r3hdm1	100	70.316	ENSMLUG00000013824	R3HDM1	93	70.218	Myotis_lucifugus
ENSSFOG00015014134	r3hdm1	100	70.773	ENSNLEG00000008622	R3HDM1	100	72.162	Nomascus_leucogenys
ENSSFOG00015014134	r3hdm1	85	60.956	ENSMEUG00000011784	R3HDM1	94	60.956	Notamacropus_eugenii
ENSSFOG00015014134	r3hdm1	100	70.631	ENSODEG00000008607	R3HDM1	100	70.890	Octodon_degus
ENSSFOG00015014134	r3hdm1	93	67.403	ENSONIG00000012017	r3hdm1	90	68.232	Oreochromis_niloticus
ENSSFOG00015014134	r3hdm1	100	61.041	ENSOANG00000007987	R3HDM1	92	69.734	Ornithorhynchus_anatinus
ENSSFOG00015014134	r3hdm1	89	62.124	ENSOCUG00000017366	R3HDM1	90	70.218	Oryctolagus_cuniculus
ENSSFOG00015014134	r3hdm1	78	72.425	ENSORLG00000004297	r3hdm1	90	73.422	Oryzias_latipes
ENSSFOG00015014134	r3hdm1	79	72.757	ENSORLG00015017355	r3hdm1	90	73.754	Oryzias_latipes_hsok
ENSSFOG00015014134	r3hdm1	100	70.976	ENSOGAG00000003136	R3HDM1	93	71.046	Otolemur_garnettii
ENSSFOG00015014134	r3hdm1	100	70.531	ENSOARG00000010788	R3HDM1	93	70.602	Ovis_aries
ENSSFOG00015014134	r3hdm1	100	70.631	ENSPPAG00000027858	R3HDM1	89	78.193	Pan_paniscus
ENSSFOG00015014134	r3hdm1	100	70.631	ENSPPRG00000002626	R3HDM1	100	72.011	Panthera_pardus
ENSSFOG00015014134	r3hdm1	100	70.874	ENSPTIG00000016581	R3HDM1	100	72.283	Panthera_tigris_altaica
ENSSFOG00015014134	r3hdm1	100	70.631	ENSPTRG00000012494	R3HDM1	89	78.193	Pan_troglodytes
ENSSFOG00015014134	r3hdm1	100	70.631	ENSPANG00000026448	R3HDM1	89	78.193	Papio_anubis
ENSSFOG00015014134	r3hdm1	50	64.684	ENSPKIG00000011224	R3HDM1	90	76.607	Paramormyrops_kingsleyae
ENSSFOG00015014134	r3hdm1	99	80.201	ENSPKIG00000004328	r3hdm1	96	73.434	Paramormyrops_kingsleyae
ENSSFOG00015014134	r3hdm1	100	71.359	ENSPSIG00000012915	R3HDM1	93	70.519	Pelodiscus_sinensis
ENSSFOG00015014134	r3hdm1	100	69.417	ENSPEMG00000015187	R3hdm1	100	69.863	Peromyscus_maniculatus_bairdii
ENSSFOG00015014134	r3hdm1	89	42.412	ENSPMAG00000003369	-	91	58.197	Petromyzon_marinus
ENSSFOG00015014134	r3hdm1	100	62.787	ENSPCIG00000002491	R3HDM1	100	71.014	Phascolarctos_cinereus
ENSSFOG00015014134	r3hdm1	88	61.823	ENSPFOG00000015036	r3hdm1	91	62.562	Poecilia_formosa
ENSSFOG00015014134	r3hdm1	89	50.295	ENSPLAG00000018042	r3hdm1	84	74.000	Poecilia_latipinna
ENSSFOG00015014134	r3hdm1	78	73.000	ENSPMEG00000023947	r3hdm1	84	74.000	Poecilia_mexicana
ENSSFOG00015014134	r3hdm1	78	74.086	ENSPREG00000007902	r3hdm1	85	75.083	Poecilia_reticulata
ENSSFOG00015014134	r3hdm1	100	68.039	ENSPPYG00000012815	R3HDM1	100	60.769	Pongo_abelii
ENSSFOG00015014134	r3hdm1	84	79.828	ENSPCAG00000006208	R3HDM1	89	68.263	Procavia_capensis
ENSSFOG00015014134	r3hdm1	87	83.395	ENSPCOG00000012698	R3HDM1	86	83.456	Propithecus_coquereli
ENSSFOG00015014134	r3hdm1	100	64.320	ENSPVAG00000006098	R3HDM1	93	64.407	Pteropus_vampyrus
ENSSFOG00015014134	r3hdm1	53	56.972	ENSPNAG00000004162	arpp21	90	49.112	Pygocentrus_nattereri
ENSSFOG00015014134	r3hdm1	94	79.420	ENSPNAG00000013952	r3hdm1	92	79.351	Pygocentrus_nattereri
ENSSFOG00015014134	r3hdm1	83	83.168	ENSPNAG00000005436	R3HDM1	99	82.623	Pygocentrus_nattereri
ENSSFOG00015014134	r3hdm1	100	69.830	ENSRNOG00000004099	R3hdm1	93	69.903	Rattus_norvegicus
ENSSFOG00015014134	r3hdm1	87	84.191	ENSRBIG00000033317	R3HDM1	100	63.163	Rhinopithecus_bieti
ENSSFOG00015014134	r3hdm1	91	78.438	ENSRROG00000034534	R3HDM1	89	78.505	Rhinopithecus_roxellana
ENSSFOG00015014134	r3hdm1	100	70.874	ENSSBOG00000020389	R3HDM1	89	78.193	Saimiri_boliviensis_boliviensis
ENSSFOG00015014134	r3hdm1	100	62.579	ENSSHAG00000016999	R3HDM1	100	62.489	Sarcophilus_harrisii
ENSSFOG00015014134	r3hdm1	99	50.000	ENSSMAG00000001669	r3hdm1	86	74.074	Scophthalmus_maximus
ENSSFOG00015014134	r3hdm1	88	64.146	ENSSDUG00000010749	r3hdm1	86	72.611	Seriola_dumerili
ENSSFOG00015014134	r3hdm1	99	64.878	ENSSLDG00000004499	r3hdm1	91	65.610	Seriola_lalandi_dorsalis
ENSSFOG00015014134	r3hdm1	68	60.458	ENSSARG00000000352	-	64	60.458	Sorex_araneus
ENSSFOG00015014134	r3hdm1	100	71.186	ENSSPUG00000004167	R3HDM1	93	70.353	Sphenodon_punctatus
ENSSFOG00015014134	r3hdm1	89	53.032	ENSSPAG00000004648	r3hdm1	86	72.930	Stegastes_partitus
ENSSFOG00015014134	r3hdm1	100	70.874	ENSSSCG00000015692	R3HDM1	93	70.944	Sus_scrofa
ENSSFOG00015014134	r3hdm1	100	61.783	ENSTGUG00000011750	R3HDM1	100	61.636	Taeniopygia_guttata
ENSSFOG00015014134	r3hdm1	79	71.383	ENSTRUG00000011654	r3hdm1	99	49.810	Takifugu_rubripes
ENSSFOG00015014134	r3hdm1	85	51.360	ENSTNIG00000010362	r3hdm1	95	52.248	Tetraodon_nigroviridis
ENSSFOG00015014134	r3hdm1	100	66.425	ENSTTRG00000003935	R3HDM1	93	66.506	Tursiops_truncatus
ENSSFOG00015014134	r3hdm1	68	70.874	ENSUAMG00000024806	R3HDM1	93	72.283	Ursus_americanus
ENSSFOG00015014134	r3hdm1	100	66.010	ENSUMAG00000005552	R3HDM1	100	58.707	Ursus_maritimus
ENSSFOG00015014134	r3hdm1	87	79.487	ENSVPAG00000007333	R3HDM1	80	79.562	Vicugna_pacos
ENSSFOG00015014134	r3hdm1	100	71.046	ENSVVUG00000006457	R3HDM1	93	71.117	Vulpes_vulpes
ENSSFOG00015014134	r3hdm1	89	66.180	ENSXETG00000019330	r3hdm1	100	58.635	Xenopus_tropicalis
ENSSFOG00015014134	r3hdm1	65	72.937	ENSXCOG00000017448	r3hdm1	82	73.927	Xiphophorus_couchianus
ENSSFOG00015014134	r3hdm1	78	74.086	ENSXMAG00000007885	r3hdm1	82	75.083	Xiphophorus_maculatus