EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015014158 (Gene tree)
Gene ID: 108930089
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1-associated protein 1-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 10099 bases
Position: chrKV410910.1:612128-622226
Accession: 108930089
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015021976	RRM_1	PF00076.22	3.5e-27	1	2
ENSSFOP00015021976	RRM_1	PF00076.22	3.5e-27	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015022222	-	3573	XM_018745145	ENSSFOP00015021976	333 (aa)	XP_018600661	A0A1W4ZJG8

Gene Model

Click here to download ENSSFOG00015014158's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015014158's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015014158	trnau1apb	94	59.341	ENSSFOG00015008251	-	79	60.000
ENSSFOG00015014158	trnau1apb	52	30.114	ENSSFOG00015008776	tia1	60	30.114

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015014158	trnau1apb	99	59.878	ENSAPOG00000010086	trnau1apb	99	59.574	Acanthochromis_polyacanthus
ENSSFOG00015014158	trnau1apb	99	63.554	ENSACIG00000001863	trnau1apb	99	59.159	Amphilophus_citrinellus
ENSSFOG00015014158	trnau1apb	99	63.768	ENSAOCG00000011891	trnau1apb	99	60.405	Amphiprion_ocellaris
ENSSFOG00015014158	trnau1apb	99	61.584	ENSAPEG00000008029	trnau1apb	99	61.696	Amphiprion_percula
ENSSFOG00015014158	trnau1apb	99	64.723	ENSATEG00000002196	trnau1apb	99	61.561	Anabas_testudineus
ENSSFOG00015014158	trnau1apb	99	63.501	ENSACLG00000003016	trnau1apb	99	59.760	Astatotilapia_calliptera
ENSSFOG00015014158	trnau1apb	98	73.780	ENSAMXG00000001805	trnau1apb	99	73.171	Astyanax_mexicanus
ENSSFOG00015014158	trnau1apb	97	62.908	ENSCSEG00000018215	trnau1apb	97	60.360	Cynoglossus_semilaevis
ENSSFOG00015014158	trnau1apb	94	59.118	ENSCVAG00000017866	trnau1apb	99	56.176	Cyprinodon_variegatus
ENSSFOG00015014158	trnau1apb	99	70.482	ENSDARG00000056475	trnau1apb	99	73.193	Danio_rerio
ENSSFOG00015014158	trnau1apb	99	76.292	ENSELUG00000016683	trnau1apb	98	75.758	Esox_lucius
ENSSFOG00015014158	trnau1apb	99	59.944	ENSFHEG00000001267	trnau1apb	99	58.239	Fundulus_heteroclitus
ENSSFOG00015014158	trnau1apb	98	61.424	ENSGMOG00000001160	trnau1apb	100	57.681	Gadus_morhua
ENSSFOG00015014158	trnau1apb	54	82.682	ENSGAFG00000006770	trnau1apb	99	55.977	Gambusia_affinis
ENSSFOG00015014158	trnau1apb	99	65.282	ENSGACG00000014944	trnau1apb	99	63.063	Gasterosteus_aculeatus
ENSSFOG00015014158	trnau1apb	71	46.809	ENSGAGG00000022384	-	78	44.255	Gopherus_agassizii
ENSSFOG00015014158	trnau1apb	99	63.663	ENSHBUG00000018944	trnau1apb	99	60.000	Haplochromis_burtoni
ENSSFOG00015014158	trnau1apb	71	69.421	ENSHCOG00000011350	trnau1apb	58	79.670	Hippocampus_comes
ENSSFOG00015014158	trnau1apb	98	74.085	ENSIPUG00000008843	tsp1l	99	73.171	Ictalurus_punctatus
ENSSFOG00015014158	trnau1apb	67	73.009	ENSKMAG00000010082	trnau1apb	99	59.195	Kryptolebias_marmoratus
ENSSFOG00015014158	trnau1apb	99	63.798	ENSLBEG00000020480	trnau1apb	99	61.290	Labrus_bergylta
ENSSFOG00015014158	trnau1apb	100	63.582	ENSLOCG00000013175	trnau1apb	100	63.284	Lepisosteus_oculatus
ENSSFOG00015014158	trnau1apb	98	64.012	ENSMAMG00000012192	trnau1apb	99	60.058	Mastacembelus_armatus
ENSSFOG00015014158	trnau1apb	99	63.663	ENSMZEG00005014852	trnau1apb	99	60.000	Maylandia_zebra
ENSSFOG00015014158	trnau1apb	71	44.118	ENSMGAG00000003234	-	99	43.220	Meleagris_gallopavo
ENSSFOG00015014158	trnau1apb	96	55.587	ENSMMOG00000021521	trnau1apb	100	52.941	Mola_mola
ENSSFOG00015014158	trnau1apb	99	58.663	ENSMALG00000003772	trnau1apb	99	58.055	Monopterus_albus
ENSSFOG00015014158	trnau1apb	97	63.526	ENSNBRG00000000751	trnau1apb	99	59.692	Neolamprologus_brichardi
ENSSFOG00015014158	trnau1apb	98	62.727	ENSONIG00000016639	trnau1apb	99	58.282	Oreochromis_niloticus
ENSSFOG00015014158	trnau1apb	60	78.894	ENSORLG00000013265	trnau1apb	99	59.429	Oryzias_latipes
ENSSFOG00015014158	trnau1apb	99	62.463	ENSORLG00020004464	trnau1apb	99	60.345	Oryzias_latipes_hni
ENSSFOG00015014158	trnau1apb	99	62.463	ENSORLG00015021098	trnau1apb	99	60.345	Oryzias_latipes_hsok
ENSSFOG00015014158	trnau1apb	60	78.392	ENSOMEG00000016531	trnau1apb	99	60.857	Oryzias_melastigma
ENSSFOG00015014158	trnau1apb	99	82.675	ENSPKIG00000007995	trnau1apb	98	82.979	Paramormyrops_kingsleyae
ENSSFOG00015014158	trnau1apb	71	48.511	ENSPSIG00000004189	-	78	44.915	Pelodiscus_sinensis
ENSSFOG00015014158	trnau1apb	99	57.143	ENSPMGG00000018509	trnau1apb	76	82.123	Periophthalmus_magnuspinnatus
ENSSFOG00015014158	trnau1apb	99	63.473	ENSPFOG00000003938	trnau1apb	99	61.212	Poecilia_formosa
ENSSFOG00015014158	trnau1apb	99	60.845	ENSPLAG00000015480	trnau1apb	99	59.091	Poecilia_latipinna
ENSSFOG00015014158	trnau1apb	99	60.845	ENSPMEG00000012743	trnau1apb	99	59.091	Poecilia_mexicana
ENSSFOG00015014158	trnau1apb	99	60.286	ENSPREG00000015035	trnau1apb	99	58.239	Poecilia_reticulata
ENSSFOG00015014158	trnau1apb	99	61.128	ENSPNYG00000012127	trnau1apb	99	57.357	Pundamilia_nyererei
ENSSFOG00015014158	trnau1apb	98	73.171	ENSPNAG00000019138	trnau1apb	98	75.000	Pygocentrus_nattereri
ENSSFOG00015014158	trnau1apb	99	61.988	ENSSMAG00000001745	trnau1apb	100	60.767	Scophthalmus_maximus
ENSSFOG00015014158	trnau1apb	99	62.353	ENSSDUG00000011109	trnau1apb	99	60.116	Seriola_dumerili
ENSSFOG00015014158	trnau1apb	99	62.353	ENSSLDG00000012947	trnau1apb	99	60.116	Seriola_lalandi_dorsalis
ENSSFOG00015014158	trnau1apb	99	64.348	ENSSPAG00000006917	trnau1apb	99	61.329	Stegastes_partitus
ENSSFOG00015014158	trnau1apb	99	57.803	ENSTRUG00000008608	trnau1apb	99	56.725	Takifugu_rubripes
ENSSFOG00015014158	trnau1apb	98	56.970	ENSTNIG00000000916	trnau1apb	99	55.215	Tetraodon_nigroviridis
ENSSFOG00015014158	trnau1apb	93	56.386	ENSXCOG00000007974	trnau1apb	93	57.235	Xiphophorus_couchianus
ENSSFOG00015014158	trnau1apb	99	60.571	ENSXMAG00000029918	trnau1apb	99	58.807	Xiphophorus_maculatus