EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015014165 (Gene tree)
Gene ID: 108929598
Gene Symbol: parn
Alias: zgc:56067
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 20577 bases
Position: chrKV410900.1:161537-182113
Accession: 108929598
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015022111	RNA_bind	PF08675.11	4.4e-31	1	1
ENSSFOP00015022061	RNA_bind	PF08675.11	8.8e-31	1	1
ENSSFOP00015022111	CAF1	PF04857.20	4.6e-90	1	1
ENSSFOP00015022061	CAF1	PF04857.20	8.1e-90	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015022357	-	1770	-	ENSSFOP00015022111	589 (aa)	-	-
ENSSFOT00015022306	-	2993	XM_018744252	ENSSFOP00015022061	689 (aa)	XP_018599768	A0A1W4ZG93

Gene Model

Click here to download ENSSFOG00015014165's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015014165's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015014165	parn	94	73.038	ENSG00000140694	PARN	94	79.661	Homo_sapiens
ENSSFOG00015014165	parn	92	73.090	ENSAMEG00000011208	PARN	96	72.104	Ailuropoda_melanoleuca
ENSSFOG00015014165	parn	98	68.944	ENSACIG00000000619	parn	100	70.698	Amphilophus_citrinellus
ENSSFOG00015014165	parn	98	76.471	ENSAOCG00000003465	parn	100	70.881	Amphiprion_ocellaris
ENSSFOG00015014165	parn	79	78.838	ENSAPEG00000010661	parn	94	80.612	Amphiprion_percula
ENSSFOG00015014165	parn	98	75.753	ENSATEG00000004661	parn	100	71.266	Anabas_testudineus
ENSSFOG00015014165	parn	93	74.653	ENSAPLG00000013914	PARN	95	74.215	Anas_platyrhynchos
ENSSFOG00015014165	parn	92	73.875	ENSACAG00000004973	PARN	96	71.704	Anolis_carolinensis
ENSSFOG00015014165	parn	96	72.315	ENSANAG00000031516	PARN	94	79.661	Aotus_nancymaae
ENSSFOG00015014165	parn	98	76.007	ENSACLG00000004742	parn	100	70.899	Astatotilapia_calliptera
ENSSFOG00015014165	parn	98	75.722	ENSAMXG00000012390	parn	96	75.722	Astyanax_mexicanus
ENSSFOG00015014165	parn	88	74.388	ENSBTAG00000018097	PARN	95	70.962	Bos_taurus
ENSSFOG00015014165	parn	94	73.720	ENSCJAG00000015866	PARN	94	79.661	Callithrix_jacchus
ENSSFOG00015014165	parn	96	71.141	ENSCAFG00000018795	PARN	96	71.057	Canis_familiaris
ENSSFOG00015014165	parn	96	71.477	ENSCAFG00020024126	PARN	96	71.382	Canis_lupus_dingo
ENSSFOG00015014165	parn	88	77.589	ENSCHIG00000018143	PARN	96	71.382	Capra_hircus
ENSSFOG00015014165	parn	77	52.017	ENSCAPG00000007984	PARN	78	52.017	Cavia_aperea
ENSSFOG00015014165	parn	88	76.083	ENSCPOG00000002263	PARN	96	70.704	Cavia_porcellus
ENSSFOG00015014165	parn	94	73.549	ENSCCAG00000030367	PARN	94	79.661	Cebus_capucinus
ENSSFOG00015014165	parn	92	75.543	ENSCATG00000041368	PARN	95	79.849	Cercocebus_atys
ENSSFOG00015014165	parn	67	36.735	ENSCATG00000033196	PNLDC1	94	32.536	Cercocebus_atys
ENSSFOG00015014165	parn	96	71.812	ENSCLAG00000015406	PARN	99	69.861	Chinchilla_lanigera
ENSSFOG00015014165	parn	94	73.208	ENSCSAG00000008142	PARN	96	72.683	Chlorocebus_sabaeus
ENSSFOG00015014165	parn	92	56.696	ENSCHOG00000007014	PARN	96	57.025	Choloepus_hoffmanni
ENSSFOG00015014165	parn	82	74.563	ENSCPBG00000006609	PARN	98	71.958	Chrysemys_picta_bellii
ENSSFOG00015014165	parn	85	42.697	ENSCING00000010142	-	99	42.884	Ciona_intestinalis
ENSSFOG00015014165	parn	94	62.437	ENSCANG00000028849	-	94	79.661	Colobus_angolensis_palliatus
ENSSFOG00015014165	parn	68	30.020	ENSCGRG00001007470	-	86	30.162	Cricetulus_griseus_chok1gshd
ENSSFOG00015014165	parn	94	72.822	ENSCGRG00001012096	Parn	91	74.564	Cricetulus_griseus_chok1gshd
ENSSFOG00015014165	parn	94	72.822	ENSCGRG00000004939	Parn	91	74.564	Cricetulus_griseus_crigri
ENSSFOG00015014165	parn	68	30.020	ENSCGRG00000010221	-	86	30.162	Cricetulus_griseus_crigri
ENSSFOG00015014165	parn	99	71.452	ENSCSEG00000002064	parn	100	69.545	Cynoglossus_semilaevis
ENSSFOG00015014165	parn	98	73.869	ENSCVAG00000014848	parn	100	69.844	Cyprinodon_variegatus
ENSSFOG00015014165	parn	98	68.614	ENSDARG00000102634	parn	100	75.455	Danio_rerio
ENSSFOG00015014165	parn	94	73.585	ENSDNOG00000000833	PARN	94	80.414	Dasypus_novemcinctus
ENSSFOG00015014165	parn	69	72.624	ENSETEG00000014828	-	67	76.210	Echinops_telfairi
ENSSFOG00015014165	parn	92	73.913	ENSEASG00005011400	PARN	96	72.876	Equus_asinus_asinus
ENSSFOG00015014165	parn	92	73.739	ENSECAG00000017792	PARN	96	72.712	Equus_caballus
ENSSFOG00015014165	parn	68	36.735	ENSECAG00000012898	PNLDC1	82	36.735	Equus_caballus
ENSSFOG00015014165	parn	64	83.333	ENSEEUG00000010370	PARN	83	64.706	Erinaceus_europaeus
ENSSFOG00015014165	parn	98	76.650	ENSELUG00000013139	parn	90	71.879	Esox_lucius
ENSSFOG00015014165	parn	96	71.644	ENSFCAG00000044961	PARN	94	77.966	Felis_catus
ENSSFOG00015014165	parn	92	73.913	ENSFALG00000003911	PARN	98	72.611	Ficedula_albicollis
ENSSFOG00015014165	parn	88	76.083	ENSFDAG00000009234	PARN	96	70.333	Fukomys_damarensis
ENSSFOG00015014165	parn	98	68.317	ENSFHEG00000013738	parn	92	84.746	Fundulus_heteroclitus
ENSSFOG00015014165	parn	90	78.637	ENSGMOG00000003231	parn	99	80.218	Gadus_morhua
ENSSFOG00015014165	parn	98	72.414	ENSGALG00000003091	PARN	96	74.548	Gallus_gallus
ENSSFOG00015014165	parn	98	72.591	ENSGAFG00000011061	parn	100	68.848	Gambusia_affinis
ENSSFOG00015014165	parn	96	74.138	ENSGACG00000019501	parn	97	73.934	Gasterosteus_aculeatus
ENSSFOG00015014165	parn	94	72.696	ENSGGOG00000025224	PARN	98	79.661	Gorilla_gorilla
ENSSFOG00015014165	parn	98	75.966	ENSHBUG00000017906	parn	93	79.422	Haplochromis_burtoni
ENSSFOG00015014165	parn	88	76.083	ENSHGLG00000010886	PARN	96	70.540	Heterocephalus_glaber_female
ENSSFOG00015014165	parn	88	76.083	ENSHGLG00100014659	PARN	96	70.540	Heterocephalus_glaber_male
ENSSFOG00015014165	parn	89	73.481	ENSHCOG00000008683	parn	96	73.741	Hippocampus_comes
ENSSFOG00015014165	parn	97	65.240	ENSIPUG00000012401	parn	100	58.501	Ictalurus_punctatus
ENSSFOG00015014165	parn	92	73.380	ENSSTOG00000007519	PARN	96	72.204	Ictidomys_tridecemlineatus
ENSSFOG00015014165	parn	92	72.906	ENSJJAG00000023049	Parn	96	72.000	Jaculus_jaculus
ENSSFOG00015014165	parn	99	75.251	ENSKMAG00000009462	parn	100	70.839	Kryptolebias_marmoratus
ENSSFOG00015014165	parn	98	76.127	ENSLBEG00000009167	parn	99	73.547	Labrus_bergylta
ENSSFOG00015014165	parn	83	74.155	ENSLACG00000004207	PARN	100	76.123	Latimeria_chalumnae
ENSSFOG00015014165	parn	99	78.325	ENSLOCG00000000715	parn	100	74.017	Lepisosteus_oculatus
ENSSFOG00015014165	parn	92	74.824	ENSLAFG00000015036	PARN	96	73.388	Loxodonta_africana
ENSSFOG00015014165	parn	96	69.088	ENSMFAG00000044852	PARN	94	79.661	Macaca_fascicularis
ENSSFOG00015014165	parn	94	73.208	ENSMMUG00000018849	PARN	94	79.661	Macaca_mulatta
ENSSFOG00015014165	parn	94	73.208	ENSMNEG00000045108	PARN	94	79.661	Macaca_nemestrina
ENSSFOG00015014165	parn	94	73.379	ENSMLEG00000031743	PARN	94	79.661	Mandrillus_leucophaeus
ENSSFOG00015014165	parn	98	75.459	ENSMAMG00000006939	parn	100	70.798	Mastacembelus_armatus
ENSSFOG00015014165	parn	98	75.966	ENSMZEG00005013590	parn	92	80.220	Maylandia_zebra
ENSSFOG00015014165	parn	91	72.680	ENSMGAG00000001004	PARN	97	71.475	Meleagris_gallopavo
ENSSFOG00015014165	parn	94	66.667	ENSMAUG00000008025	Parn	89	69.352	Mesocricetus_auratus
ENSSFOG00015014165	parn	94	73.549	ENSMICG00000016053	PARN	94	77.966	Microcebus_murinus
ENSSFOG00015014165	parn	82	77.642	ENSMOCG00000022211	Parn	100	79.065	Microtus_ochrogaster
ENSSFOG00015014165	parn	91	79.444	ENSMMOG00000011333	parn	90	79.444	Mola_mola
ENSSFOG00015014165	parn	82	79.637	ENSMODG00000004915	PARN	99	81.452	Monodelphis_domestica
ENSSFOG00015014165	parn	91	77.314	ENSMALG00000019426	parn	95	78.863	Monopterus_albus
ENSSFOG00015014165	parn	94	72.600	MGP_CAROLIEiJ_G0020466	Parn	96	71.144	Mus_caroli
ENSSFOG00015014165	parn	94	72.125	ENSMUSG00000022685	Parn	100	75.610	Mus_musculus
ENSSFOG00015014165	parn	88	76.749	MGP_PahariEiJ_G0016172	Parn	96	71.808	Mus_pahari
ENSSFOG00015014165	parn	94	72.426	MGP_SPRETEiJ_G0021361	Parn	96	70.978	Mus_spretus
ENSSFOG00015014165	parn	96	72.054	ENSMPUG00000014464	PARN	96	72.222	Mustela_putorius_furo
ENSSFOG00015014165	parn	82	77.328	ENSMLUG00000005414	PARN	100	78.947	Myotis_lucifugus
ENSSFOG00015014165	parn	90	79.664	ENSNBRG00000006805	parn	93	78.947	Neolamprologus_brichardi
ENSSFOG00015014165	parn	94	73.379	ENSNLEG00000010241	PARN	94	79.661	Nomascus_leucogenys
ENSSFOG00015014165	parn	74	67.846	ENSMEUG00000008178	-	74	66.393	Notamacropus_eugenii
ENSSFOG00015014165	parn	86	72.745	ENSOPRG00000012187	PARN	96	67.657	Ochotona_princeps
ENSSFOG00015014165	parn	96	66.321	ENSODEG00000001617	PARN	96	64.983	Octodon_degus
ENSSFOG00015014165	parn	98	76.134	ENSONIG00000000151	parn	100	71.286	Oreochromis_niloticus
ENSSFOG00015014165	parn	52	72.674	ENSOANG00000020155	-	93	68.464	Ornithorhynchus_anatinus
ENSSFOG00015014165	parn	87	77.524	ENSOCUG00000000322	PARN	91	73.966	Oryctolagus_cuniculus
ENSSFOG00015014165	parn	98	74.290	ENSORLG00020010313	parn	100	69.828	Oryzias_latipes_hni
ENSSFOG00015014165	parn	98	73.957	ENSORLG00015000300	parn	100	69.540	Oryzias_latipes_hsok
ENSSFOG00015014165	parn	98	73.658	ENSOMEG00000019555	parn	100	69.010	Oryzias_melastigma
ENSSFOG00015014165	parn	82	76.876	ENSOGAG00000014626	PARN	100	78.702	Otolemur_garnettii
ENSSFOG00015014165	parn	82	78.340	ENSOARG00000007574	PARN	100	80.162	Ovis_aries
ENSSFOG00015014165	parn	94	73.208	ENSPPAG00000031438	PARN	94	79.661	Pan_paniscus
ENSSFOG00015014165	parn	96	71.644	ENSPPRG00000018583	PARN	94	77.966	Panthera_pardus
ENSSFOG00015014165	parn	92	73.730	ENSPTIG00000012135	PARN	94	77.966	Panthera_tigris_altaica
ENSSFOG00015014165	parn	94	72.867	ENSPTRG00000007792	PARN	94	79.661	Pan_troglodytes
ENSSFOG00015014165	parn	94	70.819	ENSPANG00000020099	PARN	94	79.661	Papio_anubis
ENSSFOG00015014165	parn	98	81.879	ENSPKIG00000022807	parn	97	78.268	Paramormyrops_kingsleyae
ENSSFOG00015014165	parn	94	74.055	ENSPSIG00000014804	PARN	98	72.568	Pelodiscus_sinensis
ENSSFOG00015014165	parn	98	70.370	ENSPMGG00000014431	parn	85	71.151	Periophthalmus_magnuspinnatus
ENSSFOG00015014165	parn	94	71.007	ENSPEMG00000018439	Parn	99	68.362	Peromyscus_maniculatus_bairdii
ENSSFOG00015014165	parn	85	66.279	ENSPMAG00000003956	parn	98	67.636	Petromyzon_marinus
ENSSFOG00015014165	parn	70	71.831	ENSPCIG00000001259	PARN	91	81.356	Phascolarctos_cinereus
ENSSFOG00015014165	parn	98	72.333	ENSPFOG00000012823	parn	100	68.616	Poecilia_formosa
ENSSFOG00015014165	parn	98	72.500	ENSPLAG00000006395	parn	100	68.759	Poecilia_latipinna
ENSSFOG00015014165	parn	98	72.333	ENSPMEG00000007711	parn	100	68.759	Poecilia_mexicana
ENSSFOG00015014165	parn	98	72.500	ENSPREG00000000147	parn	100	69.044	Poecilia_reticulata
ENSSFOG00015014165	parn	94	72.449	ENSPPYG00000007123	PARN	96	72.213	Pongo_abelii
ENSSFOG00015014165	parn	83	68.072	ENSPCAG00000001741	PARN	96	63.040	Procavia_capensis
ENSSFOG00015014165	parn	92	71.652	ENSPCOG00000019292	PARN	94	77.966	Propithecus_coquereli
ENSSFOG00015014165	parn	91	70.599	ENSPVAG00000002547	PARN	96	69.079	Pteropus_vampyrus
ENSSFOG00015014165	parn	98	75.966	ENSPNYG00000006835	parn	100	71.184	Pundamilia_nyererei
ENSSFOG00015014165	parn	90	73.897	ENSPNAG00000018905	parn	100	70.015	Pygocentrus_nattereri
ENSSFOG00015014165	parn	94	72.617	ENSRNOG00000002912	Parn	94	83.158	Rattus_norvegicus
ENSSFOG00015014165	parn	96	71.843	ENSSBOG00000034726	PARN	94	79.661	Saimiri_boliviensis_boliviensis
ENSSFOG00015014165	parn	69	78.657	ENSSHAG00000008493	PARN	93	80.815	Sarcophilus_harrisii
ENSSFOG00015014165	parn	98	73.957	ENSSMAG00000000685	parn	100	69.362	Scophthalmus_maximus
ENSSFOG00015014165	parn	98	75.124	ENSSDUG00000014555	parn	100	71.449	Seriola_dumerili
ENSSFOG00015014165	parn	72	79.032	ENSSARG00000014339	PARN	75	81.106	Sorex_araneus
ENSSFOG00015014165	parn	92	75.304	ENSSPUG00000007719	PARN	90	76.736	Sphenodon_punctatus
ENSSFOG00015014165	parn	98	76.589	ENSSPAG00000007095	parn	100	72.143	Stegastes_partitus
ENSSFOG00015014165	parn	96	71.812	ENSSSCG00000007878	PARN	86	72.195	Sus_scrofa
ENSSFOG00015014165	parn	93	73.621	ENSTGUG00000004971	PARN	99	72.337	Taeniopygia_guttata
ENSSFOG00015014165	parn	96	74.252	ENSTNIG00000008252	parn	99	74.482	Tetraodon_nigroviridis
ENSSFOG00015014165	parn	85	60.681	ENSTBEG00000010407	PARN	95	60.650	Tupaia_belangeri
ENSSFOG00015014165	parn	95	67.402	ENSTTRG00000002843	PARN	96	67.763	Tursiops_truncatus
ENSSFOG00015014165	parn	72	67.890	ENSUAMG00000008283	PARN	90	69.954	Ursus_americanus
ENSSFOG00015014165	parn	96	71.812	ENSUMAG00000004527	PARN	96	72.358	Ursus_maritimus
ENSSFOG00015014165	parn	91	71.303	ENSVPAG00000008968	PARN	99	69.917	Vicugna_pacos
ENSSFOG00015014165	parn	96	71.477	ENSVVUG00000019509	PARN	96	71.545	Vulpes_vulpes
ENSSFOG00015014165	parn	94	71.453	ENSXETG00000010994	parn	100	78.476	Xenopus_tropicalis
ENSSFOG00015014165	parn	98	69.179	ENSXCOG00000015990	parn	100	71.096	Xiphophorus_couchianus
ENSSFOG00015014165	parn	98	73.500	ENSXMAG00000014783	parn	100	69.187	Xiphophorus_maculatus