EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015014272 (Gene tree)
Gene ID: 108922123
Gene Symbol: vars
Alias: CHUNP6879|im:7137378|vars2|wu:fb07a11|wu:fb07d10
Full Name: valine--tRNA ligase-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 14075 bases
Position: chrKV410810.1:359054-373128
Accession: 108922123
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015022299	tRNA-synt_1g	PF09334.11	7.1e-13	1	1
ENSSFOP00015022234	tRNA-synt_1g	PF09334.11	9.1e-13	1	1
ENSSFOP00015022183	tRNA-synt_1g	PF09334.11	9.3e-13	1	1
ENSSFOP00015022183	Anticodon_1	PF08264.13	1.1e-36	1	1
ENSSFOP00015022234	Anticodon_1	PF08264.13	1.2e-36	1	1
ENSSFOP00015022299	Anticodon_1	PF08264.13	1.3e-36	1	1
ENSSFOP00015022234	tRNA-synt_1	PF00133.22	4.2e-205	1	1
ENSSFOP00015022299	tRNA-synt_1	PF00133.22	5.2e-205	1	1
ENSSFOP00015022183	tRNA-synt_1	PF00133.22	5.3e-205	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015022429	-	4097	XM_018732038	ENSSFOP00015022183	1274 (aa)	XP_018587554	A0A1W4YGI4
ENSSFOT00015022546	-	3597	-	ENSSFOP00015022299	1198 (aa)	-	-
ENSSFOT00015022481	-	4127	-	ENSSFOP00015022234	1284 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015014272's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015014272's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015014272	vars	82	51.652	ENSSFOG00015016187	vars2	92	51.881

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015014272	vars	100	64.402	ENSG00000204394	VARS	99	70.552	Homo_sapiens
ENSSFOG00015014272	vars	94	85.746	ENSAPOG00000020691	vars	99	77.243	Acanthochromis_polyacanthus
ENSSFOG00015014272	vars	94	85.746	ENSAPOG00000020921	vars	99	77.243	Acanthochromis_polyacanthus
ENSSFOG00015014272	vars	100	64.170	ENSAMEG00000006417	VARS	100	64.247	Ailuropoda_melanoleuca
ENSSFOG00015014272	vars	100	79.455	ENSACIG00000013752	vars	100	79.455	Amphilophus_citrinellus
ENSSFOG00015014272	vars	99	85.976	ENSAOCG00000002447	vars	99	81.045	Amphiprion_ocellaris
ENSSFOG00015014272	vars	99	85.874	ENSAPEG00000010638	vars	99	80.967	Amphiprion_percula
ENSSFOG00015014272	vars	100	77.510	ENSATEG00000020219	vars	100	77.510	Anabas_testudineus
ENSSFOG00015014272	vars	86	80.941	ENSACAG00000029133	-	99	71.788	Anolis_carolinensis
ENSSFOG00015014272	vars	100	64.374	ENSANAG00000015453	VARS	100	64.529	Aotus_nancymaae
ENSSFOG00015014272	vars	99	85.569	ENSACLG00000025699	vars	97	80.826	Astatotilapia_calliptera
ENSSFOG00015014272	vars	94	80.191	ENSAMXG00000017716	vars	95	80.191	Astyanax_mexicanus
ENSSFOG00015014272	vars	100	64.633	ENSBTAG00000005631	VARS	100	64.788	Bos_taurus
ENSSFOG00015014272	vars	100	64.247	ENSCJAG00000002604	VARS	100	64.402	Callithrix_jacchus
ENSSFOG00015014272	vars	100	64.142	ENSCAFG00000000636	VARS	100	64.219	Canis_familiaris
ENSSFOG00015014272	vars	94	65.321	ENSCAFG00020020790	VARS	96	65.404	Canis_lupus_dingo
ENSSFOG00015014272	vars	99	72.312	ENSCHIG00000011008	VARS	100	64.838	Capra_hircus
ENSSFOG00015014272	vars	97	71.935	ENSTSYG00000001567	VARS	100	64.402	Carlito_syrichta
ENSSFOG00015014272	vars	91	68.209	ENSCAPG00000013736	VARS	98	68.127	Cavia_aperea
ENSSFOG00015014272	vars	100	64.484	ENSCPOG00000000870	VARS	100	64.402	Cavia_porcellus
ENSSFOG00015014272	vars	100	64.479	ENSCCAG00000035656	VARS	100	64.402	Cebus_capucinus
ENSSFOG00015014272	vars	100	64.788	ENSCATG00000022394	VARS	100	64.710	Cercocebus_atys
ENSSFOG00015014272	vars	93	64.257	ENSCLAG00000009470	VARS	96	64.251	Chinchilla_lanigera
ENSSFOG00015014272	vars	100	64.788	ENSCSAG00000008784	VARS	100	64.710	Chlorocebus_sabaeus
ENSSFOG00015014272	vars	82	74.438	ENSCPBG00000007943	VARS	97	73.817	Chrysemys_picta_bellii
ENSSFOG00015014272	vars	100	65.019	ENSCANG00000033570	VARS	100	64.942	Colobus_angolensis_palliatus
ENSSFOG00015014272	vars	100	64.556	ENSCGRG00001005686	Vars	100	64.788	Cricetulus_griseus_chok1gshd
ENSSFOG00015014272	vars	93	62.694	ENSCGRG00000013352	Vars	78	62.939	Cricetulus_griseus_crigri
ENSSFOG00015014272	vars	100	76.695	ENSCSEG00000019652	vars	100	76.695	Cynoglossus_semilaevis
ENSSFOG00015014272	vars	100	80.715	ENSCVAG00000022398	vars	100	80.715	Cyprinodon_variegatus
ENSSFOG00015014272	vars	98	85.264	ENSDARG00000044575	vars	100	81.235	Danio_rerio
ENSSFOG00015014272	vars	82	71.602	ENSDORG00000016433	Vars	93	70.683	Dipodomys_ordii
ENSSFOG00015014272	vars	69	74.684	ENSETEG00000003824	VARS	77	74.684	Echinops_telfairi
ENSSFOG00015014272	vars	61	63.760	ENSEBUG00000004637	vars	100	63.896	Eptatretus_burgeri
ENSSFOG00015014272	vars	54	72.000	ENSEBUG00000007086	vars	83	71.750	Eptatretus_burgeri
ENSSFOG00015014272	vars	100	64.710	ENSEASG00005015673	VARS	100	64.865	Equus_asinus_asinus
ENSSFOG00015014272	vars	100	64.660	ENSECAG00000014620	VARS	100	65.046	Equus_caballus
ENSSFOG00015014272	vars	69	85.897	ENSEEUG00000004116	VARS	73	70.426	Erinaceus_europaeus
ENSSFOG00015014272	vars	98	85.061	ENSELUG00000006550	vars	93	85.061	Esox_lucius
ENSSFOG00015014272	vars	100	64.142	ENSFCAG00000004510	VARS	100	64.219	Felis_catus
ENSSFOG00015014272	vars	83	70.140	ENSFDAG00000011401	VARS	100	70.050	Fukomys_damarensis
ENSSFOG00015014272	vars	98	85.061	ENSFHEG00000010672	vars	100	80.715	Fundulus_heteroclitus
ENSSFOG00015014272	vars	98	83.740	ENSGMOG00000014908	vars	100	77.283	Gadus_morhua
ENSSFOG00015014272	vars	100	80.125	ENSGAFG00000021630	vars	100	80.125	Gambusia_affinis
ENSSFOG00015014272	vars	100	77.839	ENSGACG00000009601	vars	100	77.839	Gasterosteus_aculeatus
ENSSFOG00015014272	vars	99	72.036	ENSGGOG00000011364	VARS	95	72.036	Gorilla_gorilla
ENSSFOG00015014272	vars	100	80.982	ENSHBUG00000017151	vars	97	80.982	Haplochromis_burtoni
ENSSFOG00015014272	vars	100	64.114	ENSHGLG00000011646	VARS	100	64.114	Heterocephalus_glaber_female
ENSSFOG00015014272	vars	94	60.862	ENSHGLG00100018062	VARS	99	60.618	Heterocephalus_glaber_male
ENSSFOG00015014272	vars	98	82.401	ENSHCOG00000012198	vars	99	77.535	Hippocampus_comes
ENSSFOG00015014272	vars	100	81.250	ENSIPUG00000005218	vars	100	80.938	Ictalurus_punctatus
ENSSFOG00015014272	vars	100	64.479	ENSSTOG00000013112	VARS	100	64.402	Ictidomys_tridecemlineatus
ENSSFOG00015014272	vars	97	70.863	ENSJJAG00000019749	-	100	63.467	Jaculus_jaculus
ENSSFOG00015014272	vars	100	52.116	ENSJJAG00000015343	-	100	52.194	Jaculus_jaculus
ENSSFOG00015014272	vars	100	78.193	ENSKMAG00000009455	vars	100	78.193	Kryptolebias_marmoratus
ENSSFOG00015014272	vars	98	84.959	ENSLBEG00000010341	vars	93	84.959	Labrus_bergylta
ENSSFOG00015014272	vars	91	72.668	ENSLACG00000015232	VARS	99	66.884	Latimeria_chalumnae
ENSSFOG00015014272	vars	98	79.695	ENSLOCG00000004240	vars	95	79.695	Lepisosteus_oculatus
ENSSFOG00015014272	vars	100	64.683	ENSLAFG00000023090	VARS	100	64.683	Loxodonta_africana
ENSSFOG00015014272	vars	100	64.788	ENSMFAG00000001032	VARS	100	64.710	Macaca_fascicularis
ENSSFOG00015014272	vars	100	64.788	ENSMMUG00000006828	VARS	100	64.710	Macaca_mulatta
ENSSFOG00015014272	vars	100	64.788	ENSMNEG00000042072	VARS	100	64.710	Macaca_nemestrina
ENSSFOG00015014272	vars	100	64.788	ENSMLEG00000039307	VARS	100	64.710	Mandrillus_leucophaeus
ENSSFOG00015014272	vars	98	85.366	ENSMAMG00000003949	vars	100	80.577	Mastacembelus_armatus
ENSSFOG00015014272	vars	100	80.904	ENSMZEG00005018327	vars	97	80.904	Maylandia_zebra
ENSSFOG00015014272	vars	100	64.633	ENSMAUG00000006715	Vars	100	64.865	Mesocricetus_auratus
ENSSFOG00015014272	vars	98	71.834	ENSMICG00000003548	VARS	100	64.479	Microcebus_murinus
ENSSFOG00015014272	vars	100	63.756	ENSMOCG00000015404	Vars	100	63.910	Microtus_ochrogaster
ENSSFOG00015014272	vars	100	76.948	ENSMMOG00000015801	vars	100	76.948	Mola_mola
ENSSFOG00015014272	vars	100	64.583	ENSMODG00000015204	-	100	64.606	Monodelphis_domestica
ENSSFOG00015014272	vars	99	80.031	ENSMALG00000022532	vars	99	80.031	Monopterus_albus
ENSSFOG00015014272	vars	100	65.379	MGP_CAROLIEiJ_G0021491	Vars	100	65.379	Mus_caroli
ENSSFOG00015014272	vars	97	72.543	ENSMUSG00000007029	Vars	100	65.224	Mus_musculus
ENSSFOG00015014272	vars	100	65.224	MGP_PahariEiJ_G0020486	Vars	100	65.224	Mus_pahari
ENSSFOG00015014272	vars	97	72.644	MGP_SPRETEiJ_G0022396	Vars	100	65.301	Mus_spretus
ENSSFOG00015014272	vars	100	64.297	ENSMPUG00000010821	VARS	100	64.374	Mustela_putorius_furo
ENSSFOG00015014272	vars	77	67.063	ENSMLUG00000013126	VARS	100	67.063	Myotis_lucifugus
ENSSFOG00015014272	vars	100	64.838	ENSNGAG00000012151	Vars	100	64.838	Nannospalax_galili
ENSSFOG00015014272	vars	99	85.366	ENSNBRG00000020520	vars	100	80.748	Neolamprologus_brichardi
ENSSFOG00015014272	vars	98	71.733	ENSNLEG00000006351	VARS	100	64.402	Nomascus_leucogenys
ENSSFOG00015014272	vars	97	71.704	ENSMEUG00000011378	VARS	95	71.928	Notamacropus_eugenii
ENSSFOG00015014272	vars	100	64.710	ENSOPRG00000003607	VARS	100	64.942	Ochotona_princeps
ENSSFOG00015014272	vars	100	64.219	ENSODEG00000017681	VARS	100	64.219	Octodon_degus
ENSSFOG00015014272	vars	100	80.062	ENSONIG00000013064	vars	99	83.449	Oreochromis_niloticus
ENSSFOG00015014272	vars	72	79.129	ENSOANG00000005400	VARS	98	66.272	Ornithorhynchus_anatinus
ENSSFOG00015014272	vars	100	63.454	ENSOCUG00000022463	VARS	100	63.279	Oryctolagus_cuniculus
ENSSFOG00015014272	vars	98	85.366	ENSORLG00000013063	vars	100	80.140	Oryzias_latipes
ENSSFOG00015014272	vars	98	85.366	ENSORLG00020003504	vars	100	80.265	Oryzias_latipes_hni
ENSSFOG00015014272	vars	98	85.569	ENSORLG00015009001	vars	100	80.482	Oryzias_latipes_hsok
ENSSFOG00015014272	vars	99	85.264	ENSOMEG00000015016	vars	100	80.281	Oryzias_melastigma
ENSSFOG00015014272	vars	100	64.247	ENSOGAG00000007515	VARS	100	64.170	Otolemur_garnettii
ENSSFOG00015014272	vars	100	64.402	ENSPPAG00000034012	VARS	100	64.556	Pan_paniscus
ENSSFOG00015014272	vars	100	64.297	ENSPPRG00000014855	VARS	100	64.374	Panthera_pardus
ENSSFOG00015014272	vars	86	68.402	ENSPTIG00000010462	VARS	95	67.774	Panthera_tigris_altaica
ENSSFOG00015014272	vars	100	64.402	ENSPTRG00000017985	VARS	100	64.556	Pan_troglodytes
ENSSFOG00015014272	vars	96	71.576	ENSPANG00000014565	VARS	93	71.576	Papio_anubis
ENSSFOG00015014272	vars	100	88.110	ENSPKIG00000016304	vars	100	83.997	Paramormyrops_kingsleyae
ENSSFOG00015014272	vars	100	78.098	ENSPMGG00000023909	vars	100	78.098	Periophthalmus_magnuspinnatus
ENSSFOG00015014272	vars	100	64.633	ENSPEMG00000006639	Vars	100	64.865	Peromyscus_maniculatus_bairdii
ENSSFOG00015014272	vars	100	64.583	ENSPCIG00000018553	VARS	100	64.529	Phascolarctos_cinereus
ENSSFOG00015014272	vars	100	80.700	ENSPFOG00000015690	vars	100	80.700	Poecilia_formosa
ENSSFOG00015014272	vars	100	80.623	ENSPLAG00000009590	vars	100	80.623	Poecilia_latipinna
ENSSFOG00015014272	vars	100	80.623	ENSPMEG00000004708	vars	100	80.623	Poecilia_mexicana
ENSSFOG00015014272	vars	94	85.875	ENSPREG00000013264	vars	99	85.875	Poecilia_reticulata
ENSSFOG00015014272	vars	100	63.166	ENSPPYG00000016460	VARS	100	63.089	Pongo_abelii
ENSSFOG00015014272	vars	86	66.901	ENSPCAG00000013565	VARS	86	66.901	Procavia_capensis
ENSSFOG00015014272	vars	100	64.429	ENSPCOG00000010942	VARS	100	64.815	Propithecus_coquereli
ENSSFOG00015014272	vars	94	71.226	ENSPVAG00000012403	VARS	100	62.625	Pteropus_vampyrus
ENSSFOG00015014272	vars	100	80.904	ENSPNYG00000022511	vars	100	80.904	Pundamilia_nyererei
ENSSFOG00015014272	vars	99	86.687	ENSPNAG00000020962	vars	100	81.045	Pygocentrus_nattereri
ENSSFOG00015014272	vars	100	65.019	ENSRNOG00000000867	Vars	100	64.942	Rattus_norvegicus
ENSSFOG00015014272	vars	100	64.865	ENSRBIG00000041669	VARS	100	64.788	Rhinopithecus_bieti
ENSSFOG00015014272	vars	100	64.865	ENSRROG00000045490	VARS	100	64.788	Rhinopithecus_roxellana
ENSSFOG00015014272	vars	100	64.219	ENSSBOG00000035402	VARS	100	64.374	Saimiri_boliviensis_boliviensis
ENSSFOG00015014272	vars	97	72.312	ENSSHAG00000006937	VARS	100	63.978	Sarcophilus_harrisii
ENSSFOG00015014272	vars	98	83.638	ENSSMAG00000009596	vars	95	83.638	Scophthalmus_maximus
ENSSFOG00015014272	vars	100	81.138	ENSSDUG00000014177	vars	100	81.138	Seriola_dumerili
ENSSFOG00015014272	vars	100	80.904	ENSSLDG00000025316	vars	100	80.904	Seriola_lalandi_dorsalis
ENSSFOG00015014272	vars	100	80.421	ENSSPAG00000017068	vars	100	80.421	Stegastes_partitus
ENSSFOG00015014272	vars	100	64.170	ENSSSCG00000038950	VARS	100	64.556	Sus_scrofa
ENSSFOG00015014272	vars	81	75.506	ENSTRUG00000012307	vars	97	75.312	Takifugu_rubripes
ENSSFOG00015014272	vars	99	82.622	ENSTNIG00000008011	vars	100	77.960	Tetraodon_nigroviridis
ENSSFOG00015014272	vars	97	67.211	ENSTTRG00000014128	VARS	94	67.211	Tursiops_truncatus
ENSSFOG00015014272	vars	97	69.706	ENSUAMG00000010424	VARS	100	62.722	Ursus_americanus
ENSSFOG00015014272	vars	100	59.101	ENSUMAG00000013486	VARS	98	62.769	Ursus_maritimus
ENSSFOG00015014272	vars	97	71.907	ENSVVUG00000021323	VARS	100	64.402	Vulpes_vulpes
ENSSFOG00015014272	vars	99	69.849	ENSXETG00000024076	vars	100	62.868	Xenopus_tropicalis
ENSSFOG00015014272	vars	100	78.488	ENSXCOG00000019172	vars	100	78.488	Xiphophorus_couchianus
ENSSFOG00015014272	vars	100	80.233	ENSXMAG00000010927	vars	100	80.233	Xiphophorus_maculatus