EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015014355 (Gene tree)
Gene ID: 108925051
Gene Symbol: skiv2l2
Alias: julie|mtrex|skiv2l2|wu:fd11a05|zgc:63838
Full Name: Mtr4 exosome RNA helicase
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 34432 bases
Position: chrKV410839.1:798741-833172
Accession: 108925051
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015022385	rRNA_proc-arch	PF13234.6	7e-89	1	1
ENSSFOP00015022430	rRNA_proc-arch	PF13234.6	7e-89	1	1
ENSSFOP00015022430	DEAD	PF00270.29	5.1e-17	1	1
ENSSFOP00015022385	DEAD	PF00270.29	5.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015022632	-	7119	XM_018736756	ENSSFOP00015022385	1033 (aa)	XP_018592272	A0A0P7V389
ENSSFOT00015022678	-	3072	-	ENSSFOP00015022430	1023 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015014355's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015014355's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015014355	skiv2l2	90	36.552	ENSSFOG00015016930	skiv2l	79	36.788

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015014355	skiv2l2	100	87.285	ENSG00000039123	MTREX	100	87.380	Homo_sapiens
ENSSFOG00015014355	skiv2l2	100	87.199	ENSAPOG00000007814	mtrex	100	87.295	Acanthochromis_polyacanthus
ENSSFOG00015014355	skiv2l2	100	87.297	ENSAMEG00000013856	MTREX	100	87.297	Ailuropoda_melanoleuca
ENSSFOG00015014355	skiv2l2	100	86.706	ENSACIG00000015117	mtrex	100	86.706	Amphilophus_citrinellus
ENSSFOG00015014355	skiv2l2	100	87.404	ENSAOCG00000011884	mtrex	100	87.500	Amphiprion_ocellaris
ENSSFOG00015014355	skiv2l2	100	87.392	ENSAPEG00000019384	mtrex	100	87.488	Amphiprion_percula
ENSSFOG00015014355	skiv2l2	100	87.380	ENSATEG00000015117	mtrex	100	87.476	Anabas_testudineus
ENSSFOG00015014355	skiv2l2	97	87.338	ENSAPLG00000009694	MTREX	99	87.338	Anas_platyrhynchos
ENSSFOG00015014355	skiv2l2	100	87.344	ENSACAG00000015200	MTREX	96	87.344	Anolis_carolinensis
ENSSFOG00015014355	skiv2l2	100	87.476	ENSANAG00000023095	MTREX	100	87.476	Aotus_nancymaae
ENSSFOG00015014355	skiv2l2	100	86.647	ENSACLG00000001921	mtrex	100	86.647	Astatotilapia_calliptera
ENSSFOG00015014355	skiv2l2	97	86.259	ENSAMXG00000018751	mtrex	99	88.134	Astyanax_mexicanus
ENSSFOG00015014355	skiv2l2	100	87.452	ENSBTAG00000010518	MTREX	100	87.452	Bos_taurus
ENSSFOG00015014355	skiv2l2	92	54.295	WBGene00012342	mtr-4	91	54.295	Caenorhabditis_elegans
ENSSFOG00015014355	skiv2l2	100	86.787	ENSCJAG00000001773	MTREX	100	86.977	Callithrix_jacchus
ENSSFOG00015014355	skiv2l2	100	87.380	ENSCAFG00000006818	MTREX	100	87.476	Canis_familiaris
ENSSFOG00015014355	skiv2l2	100	87.380	ENSCAFG00020024352	MTREX	100	87.476	Canis_lupus_dingo
ENSSFOG00015014355	skiv2l2	100	87.285	ENSCHIG00000024413	MTREX	100	87.380	Capra_hircus
ENSSFOG00015014355	skiv2l2	94	89.408	ENSTSYG00000007389	MTREX	100	89.408	Carlito_syrichta
ENSSFOG00015014355	skiv2l2	97	66.467	ENSCAPG00000008696	MTREX	100	66.467	Cavia_aperea
ENSSFOG00015014355	skiv2l2	100	87.285	ENSCPOG00000009797	MTREX	100	87.476	Cavia_porcellus
ENSSFOG00015014355	skiv2l2	100	87.380	ENSCCAG00000014177	MTREX	100	87.476	Cebus_capucinus
ENSSFOG00015014355	skiv2l2	100	87.189	ENSCATG00000042153	MTREX	100	87.285	Cercocebus_atys
ENSSFOG00015014355	skiv2l2	100	87.572	ENSCLAG00000006622	MTREX	100	87.572	Chinchilla_lanigera
ENSSFOG00015014355	skiv2l2	100	83.413	ENSCSAG00000016445	MTREX	100	83.508	Chlorocebus_sabaeus
ENSSFOG00015014355	skiv2l2	69	98.611	ENSCHOG00000010936	-	70	98.611	Choloepus_hoffmanni
ENSSFOG00015014355	skiv2l2	100	87.440	ENSCPBG00000026551	MTREX	94	87.969	Chrysemys_picta_bellii
ENSSFOG00015014355	skiv2l2	99	68.077	ENSCING00000003239	-	99	68.077	Ciona_intestinalis
ENSSFOG00015014355	skiv2l2	99	67.084	ENSCSAVG00000009304	-	100	71.106	Ciona_savignyi
ENSSFOG00015014355	skiv2l2	100	87.380	ENSCANG00000035770	MTREX	100	87.380	Colobus_angolensis_palliatus
ENSSFOG00015014355	skiv2l2	100	87.368	ENSCGRG00001024680	Mtrex	100	87.464	Cricetulus_griseus_chok1gshd
ENSSFOG00015014355	skiv2l2	100	87.368	ENSCGRG00000000307	Mtrex	100	87.464	Cricetulus_griseus_crigri
ENSSFOG00015014355	skiv2l2	100	86.390	ENSCSEG00000018621	mtrex	100	84.866	Cynoglossus_semilaevis
ENSSFOG00015014355	skiv2l2	100	86.564	ENSCVAG00000004556	mtrex	100	86.827	Cyprinodon_variegatus
ENSSFOG00015014355	skiv2l2	100	88.696	ENSDARG00000013457	mtrex	100	88.696	Danio_rerio
ENSSFOG00015014355	skiv2l2	100	87.143	ENSDNOG00000015375	MTREX	100	87.143	Dasypus_novemcinctus
ENSSFOG00015014355	skiv2l2	100	86.807	ENSDORG00000006782	Mtrex	100	87.106	Dipodomys_ordii
ENSSFOG00015014355	skiv2l2	93	65.625	FBgn0001986	Mtr4	95	62.818	Drosophila_melanogaster
ENSSFOG00015014355	skiv2l2	90	71.628	ENSETEG00000000727	MTREX	90	71.628	Echinops_telfairi
ENSSFOG00015014355	skiv2l2	99	74.759	ENSEBUG00000012869	mtrex	99	74.759	Eptatretus_burgeri
ENSSFOG00015014355	skiv2l2	100	86.998	ENSEASG00005013270	MTREX	100	86.998	Equus_asinus_asinus
ENSSFOG00015014355	skiv2l2	100	87.094	ENSECAG00000023723	MTREX	100	94.907	Equus_caballus
ENSSFOG00015014355	skiv2l2	98	79.495	ENSEEUG00000000527	MTREX	100	79.592	Erinaceus_europaeus
ENSSFOG00015014355	skiv2l2	100	87.292	ENSELUG00000004898	mtrex	100	92.857	Esox_lucius
ENSSFOG00015014355	skiv2l2	100	87.763	ENSFCAG00000010575	MTREX	100	87.763	Felis_catus
ENSSFOG00015014355	skiv2l2	100	86.609	ENSFALG00000010850	MTREX	100	86.416	Ficedula_albicollis
ENSSFOG00015014355	skiv2l2	100	87.165	ENSFDAG00000011199	MTREX	100	87.165	Fukomys_damarensis
ENSSFOG00015014355	skiv2l2	100	86.359	ENSFHEG00000023014	mtrex	100	86.117	Fundulus_heteroclitus
ENSSFOG00015014355	skiv2l2	100	82.529	ENSGMOG00000014702	mtrex	100	83.012	Gadus_morhua
ENSSFOG00015014355	skiv2l2	100	87.053	ENSGALG00000014709	MTREX	86	87.053	Gallus_gallus
ENSSFOG00015014355	skiv2l2	100	86.609	ENSGAFG00000012425	mtrex	100	86.705	Gambusia_affinis
ENSSFOG00015014355	skiv2l2	100	82.274	ENSGACG00000016260	mtrex	96	87.609	Gasterosteus_aculeatus
ENSSFOG00015014355	skiv2l2	100	87.584	ENSGAGG00000020036	MTREX	100	87.584	Gopherus_agassizii
ENSSFOG00015014355	skiv2l2	100	87.285	ENSGGOG00000001867	MTREX	100	87.380	Gorilla_gorilla
ENSSFOG00015014355	skiv2l2	100	86.647	ENSHBUG00000006229	mtrex	100	86.647	Haplochromis_burtoni
ENSSFOG00015014355	skiv2l2	100	87.548	ENSHGLG00000019445	SKIV2L2	100	87.548	Heterocephalus_glaber_female
ENSSFOG00015014355	skiv2l2	100	87.548	ENSHGLG00100011833	SKIV2L2	100	87.548	Heterocephalus_glaber_male
ENSSFOG00015014355	skiv2l2	93	87.169	ENSHCOG00000019995	mtrex	100	87.169	Hippocampus_comes
ENSSFOG00015014355	skiv2l2	100	88.996	ENSIPUG00000024348	skiv2l2	100	88.996	Ictalurus_punctatus
ENSSFOG00015014355	skiv2l2	100	87.285	ENSSTOG00000010802	MTREX	100	87.285	Ictidomys_tridecemlineatus
ENSSFOG00015014355	skiv2l2	100	82.709	ENSJJAG00000020975	Mtrex	100	82.805	Jaculus_jaculus
ENSSFOG00015014355	skiv2l2	100	86.622	ENSKMAG00000012642	mtrex	100	86.622	Kryptolebias_marmoratus
ENSSFOG00015014355	skiv2l2	100	87.007	ENSLBEG00000019367	mtrex	99	88.843	Labrus_bergylta
ENSSFOG00015014355	skiv2l2	100	88.889	ENSLACG00000009075	MTREX	100	88.889	Latimeria_chalumnae
ENSSFOG00015014355	skiv2l2	100	91.506	ENSLOCG00000010186	mtrex	100	91.506	Lepisosteus_oculatus
ENSSFOG00015014355	skiv2l2	99	85.277	ENSLAFG00000010497	MTREX	100	85.373	Loxodonta_africana
ENSSFOG00015014355	skiv2l2	100	87.189	ENSMFAG00000031610	MTREX	100	87.285	Macaca_fascicularis
ENSSFOG00015014355	skiv2l2	100	86.737	ENSMMUG00000010379	MTREX	100	86.749	Macaca_mulatta
ENSSFOG00015014355	skiv2l2	100	87.189	ENSMNEG00000032746	MTREX	100	87.285	Macaca_nemestrina
ENSSFOG00015014355	skiv2l2	100	87.189	ENSMLEG00000041051	MTREX	100	87.285	Mandrillus_leucophaeus
ENSSFOG00015014355	skiv2l2	100	86.829	ENSMAMG00000016753	mtrex	100	87.317	Mastacembelus_armatus
ENSSFOG00015014355	skiv2l2	100	86.647	ENSMZEG00005000414	mtrex	100	86.647	Maylandia_zebra
ENSSFOG00015014355	skiv2l2	95	64.415	ENSMGAG00000003980	MTREX	99	64.415	Meleagris_gallopavo
ENSSFOG00015014355	skiv2l2	100	87.273	ENSMAUG00000010727	Mtrex	100	87.368	Mesocricetus_auratus
ENSSFOG00015014355	skiv2l2	100	87.572	ENSMICG00000012779	MTREX	100	87.667	Microcebus_murinus
ENSSFOG00015014355	skiv2l2	100	87.189	ENSMOCG00000019886	Mtrex	100	87.189	Microtus_ochrogaster
ENSSFOG00015014355	skiv2l2	100	86.244	ENSMMOG00000002476	mtrex	100	86.341	Mola_mola
ENSSFOG00015014355	skiv2l2	100	88.235	ENSMODG00000019494	MTREX	100	88.235	Monodelphis_domestica
ENSSFOG00015014355	skiv2l2	100	80.614	ENSMALG00000002917	mtrex	98	84.908	Monopterus_albus
ENSSFOG00015014355	skiv2l2	100	87.452	MGP_CAROLIEiJ_G0018896	Mtrex	100	87.452	Mus_caroli
ENSSFOG00015014355	skiv2l2	100	87.548	ENSMUSG00000016018	Mtrex	100	87.548	Mus_musculus
ENSSFOG00015014355	skiv2l2	100	87.452	MGP_PahariEiJ_G0015967	Mtrex	100	87.452	Mus_pahari
ENSSFOG00015014355	skiv2l2	100	87.548	MGP_SPRETEiJ_G0019775	Mtrex	100	87.548	Mus_spretus
ENSSFOG00015014355	skiv2l2	100	87.476	ENSMPUG00000007619	MTREX	100	87.572	Mustela_putorius_furo
ENSSFOG00015014355	skiv2l2	100	86.915	ENSMLUG00000001152	MTREX	100	86.915	Myotis_lucifugus
ENSSFOG00015014355	skiv2l2	100	87.285	ENSNGAG00000011938	Mtrex	100	87.488	Nannospalax_galili
ENSSFOG00015014355	skiv2l2	100	86.744	ENSNBRG00000011293	mtrex	100	86.744	Neolamprologus_brichardi
ENSSFOG00015014355	skiv2l2	100	83.588	ENSNLEG00000001494	MTREX	100	83.683	Nomascus_leucogenys
ENSSFOG00015014355	skiv2l2	83	100.000	ENSMEUG00000006496	-	83	100.000	Notamacropus_eugenii
ENSSFOG00015014355	skiv2l2	100	73.730	ENSOPRG00000008009	MTREX	100	73.826	Ochotona_princeps
ENSSFOG00015014355	skiv2l2	100	86.807	ENSODEG00000017234	MTREX	100	86.902	Octodon_degus
ENSSFOG00015014355	skiv2l2	100	86.551	ENSONIG00000007587	mtrex	100	86.551	Oreochromis_niloticus
ENSSFOG00015014355	skiv2l2	50	86.602	ENSOANG00000004885	-	99	86.602	Ornithorhynchus_anatinus
ENSSFOG00015014355	skiv2l2	100	87.739	ENSOCUG00000004463	MTREX	100	87.739	Oryctolagus_cuniculus
ENSSFOG00015014355	skiv2l2	100	86.635	ENSORLG00000005443	mtrex	100	86.635	Oryzias_latipes
ENSSFOG00015014355	skiv2l2	100	86.635	ENSORLG00020006329	mtrex	100	86.635	Oryzias_latipes_hni
ENSSFOG00015014355	skiv2l2	100	86.635	ENSORLG00015012924	mtrex	100	86.635	Oryzias_latipes_hsok
ENSSFOG00015014355	skiv2l2	100	86.167	ENSOMEG00000008825	mtrex	100	86.167	Oryzias_melastigma
ENSSFOG00015014355	skiv2l2	100	87.380	ENSOGAG00000002886	MTREX	100	87.679	Otolemur_garnettii
ENSSFOG00015014355	skiv2l2	100	87.035	ENSOARG00000007764	MTREX	100	87.131	Ovis_aries
ENSSFOG00015014355	skiv2l2	100	87.380	ENSPPAG00000039291	MTREX	100	87.476	Pan_paniscus
ENSSFOG00015014355	skiv2l2	100	87.763	ENSPPRG00000019701	MTREX	100	87.763	Panthera_pardus
ENSSFOG00015014355	skiv2l2	100	86.329	ENSPTIG00000009313	MTREX	100	86.329	Panthera_tigris_altaica
ENSSFOG00015014355	skiv2l2	100	87.380	ENSPTRG00000016878	MTREX	100	87.476	Pan_troglodytes
ENSSFOG00015014355	skiv2l2	100	87.094	ENSPANG00000009697	MTREX	100	87.189	Papio_anubis
ENSSFOG00015014355	skiv2l2	100	93.133	ENSPKIG00000020833	mtrex	100	93.133	Paramormyrops_kingsleyae
ENSSFOG00015014355	skiv2l2	100	87.657	ENSPSIG00000012150	MTREX	100	88.042	Pelodiscus_sinensis
ENSSFOG00015014355	skiv2l2	100	85.478	ENSPMGG00000002582	mtrex	100	85.478	Periophthalmus_magnuspinnatus
ENSSFOG00015014355	skiv2l2	95	66.700	ENSPMAG00000009668	mtrex	100	66.700	Petromyzon_marinus
ENSSFOG00015014355	skiv2l2	93	91.903	ENSPCIG00000024730	MTREX	100	91.903	Phascolarctos_cinereus
ENSSFOG00015014355	skiv2l2	77	88.973	ENSPFOG00000003141	mtrex	100	89.227	Poecilia_formosa
ENSSFOG00015014355	skiv2l2	100	86.429	ENSPLAG00000021311	mtrex	100	86.622	Poecilia_latipinna
ENSSFOG00015014355	skiv2l2	94	88.924	ENSPMEG00000010597	mtrex	99	89.133	Poecilia_mexicana
ENSSFOG00015014355	skiv2l2	100	86.333	ENSPREG00000003089	mtrex	100	86.526	Poecilia_reticulata
ENSSFOG00015014355	skiv2l2	98	87.075	ENSPPYG00000015469	MTREX	98	87.172	Pongo_abelii
ENSSFOG00015014355	skiv2l2	94	79.070	ENSPCAG00000013120	MTREX	94	79.070	Procavia_capensis
ENSSFOG00015014355	skiv2l2	99	81.532	ENSPCOG00000018092	MTREX	100	81.532	Propithecus_coquereli
ENSSFOG00015014355	skiv2l2	100	87.285	ENSPVAG00000002445	MTREX	100	87.380	Pteropus_vampyrus
ENSSFOG00015014355	skiv2l2	100	86.551	ENSPNYG00000006164	mtrex	100	86.551	Pundamilia_nyererei
ENSSFOG00015014355	skiv2l2	100	89.875	ENSPNAG00000008794	mtrex	100	89.875	Pygocentrus_nattereri
ENSSFOG00015014355	skiv2l2	99	86.834	ENSRNOG00000010125	Mtrex	97	87.222	Rattus_norvegicus
ENSSFOG00015014355	skiv2l2	100	85.564	ENSRBIG00000034930	MTREX	100	85.660	Rhinopithecus_bieti
ENSSFOG00015014355	skiv2l2	100	87.285	ENSRROG00000039895	MTREX	100	87.380	Rhinopithecus_roxellana
ENSSFOG00015014355	skiv2l2	91	56.949	YJL050W	MTR4	96	53.965	Saccharomyces_cerevisiae
ENSSFOG00015014355	skiv2l2	100	87.380	ENSSBOG00000026693	MTREX	100	87.380	Saimiri_boliviensis_boliviensis
ENSSFOG00015014355	skiv2l2	96	89.769	ENSSHAG00000004600	MTREX	99	89.769	Sarcophilus_harrisii
ENSSFOG00015014355	skiv2l2	100	86.718	ENSSMAG00000007572	mtrex	100	86.814	Scophthalmus_maximus
ENSSFOG00015014355	skiv2l2	100	88.065	ENSSDUG00000023789	mtrex	100	88.162	Seriola_dumerili
ENSSFOG00015014355	skiv2l2	100	87.969	ENSSLDG00000006301	mtrex	100	88.065	Seriola_lalandi_dorsalis
ENSSFOG00015014355	skiv2l2	100	85.496	ENSSARG00000008387	MTREX	100	85.769	Sorex_araneus
ENSSFOG00015014355	skiv2l2	90	89.221	ENSSPUG00000007071	MTREX	96	89.221	Sphenodon_punctatus
ENSSFOG00015014355	skiv2l2	100	86.119	ENSSPAG00000011319	mtrex	100	86.217	Stegastes_partitus
ENSSFOG00015014355	skiv2l2	100	87.285	ENSSSCG00000016911	MTREX	100	87.380	Sus_scrofa
ENSSFOG00015014355	skiv2l2	100	85.783	ENSTGUG00000002480	MTREX	100	85.783	Taeniopygia_guttata
ENSSFOG00015014355	skiv2l2	100	85.934	ENSTRUG00000014571	mtrex	100	86.127	Takifugu_rubripes
ENSSFOG00015014355	skiv2l2	100	72.467	ENSTBEG00000007769	MTREX	100	72.467	Tupaia_belangeri
ENSSFOG00015014355	skiv2l2	100	87.165	ENSTTRG00000008678	MTREX	100	87.165	Tursiops_truncatus
ENSSFOG00015014355	skiv2l2	100	87.189	ENSUAMG00000023061	MTREX	100	87.285	Ursus_americanus
ENSSFOG00015014355	skiv2l2	100	87.355	ENSUMAG00000009373	MTREX	99	92.334	Ursus_maritimus
ENSSFOG00015014355	skiv2l2	100	77.151	ENSVPAG00000011174	MTREX	100	77.151	Vicugna_pacos
ENSSFOG00015014355	skiv2l2	100	87.380	ENSVVUG00000021337	MTREX	100	87.476	Vulpes_vulpes
ENSSFOG00015014355	skiv2l2	100	88.309	ENSXETG00000032798	MTREX	100	88.309	Xenopus_tropicalis
ENSSFOG00015014355	skiv2l2	100	86.622	ENSXMAG00000004799	mtrex	100	86.718	Xiphophorus_maculatus