EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015015331 (Gene tree)
Gene ID: 108934917
Gene Symbol: setd1ba
Alias: im:7156157|si:dkey-237o15.4
Full Name: histone-lysine N-methyltransferase SETD1B-A-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 22862 bases
Position: chrKV410795.1:2137707-2160568
Accession: 108934917
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015023855	RRM_1	PF00076.22	2.2e-09	1	1
ENSSFOP00015023871	RRM_1	PF00076.22	2.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015024132	-	6634	XM_018753134	ENSSFOP00015023871	1838 (aa)	XP_018608650	A0A1W5A6P7
ENSSFOT00015024115	-	5876	XM_018753143	ENSSFOP00015023855	1821 (aa)	XP_018608659	A0A1W4ZYE9

Gene Model

Click here to download ENSSFOG00015015331's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm00310	Lysine degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015015331's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015015331	setd1ba	78	70.959	ENSSFOG00015004814	SETD1B	88	73.410

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015015331	setd1ba	95	58.681	ENSATEG00000021563	setd1ba	59	67.518	Anabas_testudineus
ENSSFOG00015015331	setd1ba	91	55.313	ENSAPLG00000005217	SETD1B	69	64.857	Anas_platyrhynchos
ENSSFOG00015015331	setd1ba	72	84.259	ENSAMXG00000020648	setd1ba	96	58.309	Astyanax_mexicanus
ENSSFOG00015015331	setd1ba	51	82.186	ENSTSYG00000033777	SETD1B	59	57.143	Carlito_syrichta
ENSSFOG00015015331	setd1ba	68	84.899	ENSCLAG00000013200	SETD1B	65	66.234	Chinchilla_lanigera
ENSSFOG00015015331	setd1ba	76	51.971	ENSCPBG00000026067	SETD1B	52	64.970	Chrysemys_picta_bellii
ENSSFOG00015015331	setd1ba	64	71.255	ENSCANG00000023445	SETD1B	75	70.850	Colobus_angolensis_palliatus
ENSSFOG00015015331	setd1ba	54	85.235	ENSCGRG00000018075	Setd1b	75	73.913	Cricetulus_griseus_crigri
ENSSFOG00015015331	setd1ba	95	58.242	ENSCVAG00000022068	setd1ba	77	75.617	Cyprinodon_variegatus
ENSSFOG00015015331	setd1ba	71	52.802	ENSFALG00000009136	SETD1B	52	66.168	Ficedula_albicollis
ENSSFOG00015015331	setd1ba	88	64.345	ENSGAFG00000008712	setd1ba	67	63.607	Gambusia_affinis
ENSSFOG00015015331	setd1ba	76	52.360	ENSGAGG00000025013	SETD1B	53	63.305	Gopherus_agassizii
ENSSFOG00015015331	setd1ba	72	55.788	ENSLACG00000018379	SETD1B	55	64.348	Latimeria_chalumnae
ENSSFOG00015015331	setd1ba	68	55.817	ENSMGAG00000004421	SETD1B	53	64.041	Meleagris_gallopavo
ENSSFOG00015015331	setd1ba	62	71.864	ENSONIG00000010832	-	51	66.970	Oreochromis_niloticus
ENSSFOG00015015331	setd1ba	57	57.441	ENSORLG00015004156	setd1ba	85	61.201	Oryzias_latipes_hsok
ENSSFOG00015015331	setd1ba	72	60.210	ENSPKIG00000023115	setd1ba	70	59.583	Paramormyrops_kingsleyae
ENSSFOG00015015331	setd1ba	56	80.128	ENSPCIG00000028605	SETD1B	51	62.090	Phascolarctos_cinereus
ENSSFOG00015015331	setd1ba	94	58.207	ENSPFOG00000019768	setd1ba	96	60.709	Poecilia_formosa
ENSSFOG00015015331	setd1ba	93	59.353	ENSPLAG00000023459	setd1ba	96	59.763	Poecilia_latipinna
ENSSFOG00015015331	setd1ba	94	58.207	ENSPMEG00000020446	setd1ba	96	61.004	Poecilia_mexicana
ENSSFOG00015015331	setd1ba	68	79.279	ENSPNAG00000016011	setd1ba	96	58.540	Pygocentrus_nattereri
ENSSFOG00015015331	setd1ba	70	53.641	ENSSPUG00000011847	SETD1B	52	62.745	Sphenodon_punctatus
ENSSFOG00015015331	setd1ba	70	84.211	ENSSSCG00000009806	SETD1B	77	60.802	Sus_scrofa
ENSSFOG00015015331	setd1ba	71	55.586	ENSTGUG00000006093	-	52	65.487	Taeniopygia_guttata
ENSSFOG00015015331	setd1ba	70	55.966	ENSXETG00000003760	setd1b	52	64.478	Xenopus_tropicalis
ENSSFOG00015015331	setd1ba	93	58.172	ENSXCOG00000004451	setd1ba	95	60.876	Xiphophorus_couchianus