EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015015507 (Gene tree)
Gene ID: 108938494
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival motor neuron protein 1-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 2547 bases
Position: chrKV411167.1:9817510-9820056
Accession: 108938494
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015024392	TUDOR	PF00567.24	1.3e-05	1	1
ENSSFOP00015024370	TUDOR	PF00567.24	1.5e-05	1	1
ENSSFOP00015024370	SMN	PF06003.12	2.1e-116	1	1
ENSSFOP00015024392	SMN	PF06003.12	5.2e-103	1	2
ENSSFOP00015024392	SMN	PF06003.12	5.2e-103	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015024658	-	771	-	ENSSFOP00015024392	256 (aa)	-	-
ENSSFOT00015024635	-	828	XM_018759068	ENSSFOP00015024370	275 (aa)	XP_018614584	-

Gene Model

Click here to download ENSSFOG00015015507's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015015507's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015015507	smn1	91	37.607	ENSSFOG00015022042	-	88	35.965

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015015507	smn1	94	53.226	ENSG00000205571	SMN2	78	69.444	Homo_sapiens
ENSSFOG00015015507	smn1	94	53.226	ENSG00000172062	SMN1	90	53.441	Homo_sapiens
ENSSFOG00015015507	smn1	100	57.770	ENSAPOG00000011324	smn1	100	61.189	Acanthochromis_polyacanthus
ENSSFOG00015015507	smn1	94	51.636	ENSAMEG00000003316	-	89	52.364	Ailuropoda_melanoleuca
ENSSFOG00015015507	smn1	93	58.555	ENSACIG00000019772	-	99	58.555	Amphilophus_citrinellus
ENSSFOG00015015507	smn1	100	60.071	ENSAOCG00000024444	smn1	100	61.538	Amphiprion_ocellaris
ENSSFOG00015015507	smn1	100	60.839	ENSAPEG00000016504	smn1	100	61.538	Amphiprion_percula
ENSSFOG00015015507	smn1	95	61.011	ENSATEG00000002182	smn1	82	60.650	Anabas_testudineus
ENSSFOG00015015507	smn1	70	49.038	ENSAPLG00000010912	-	99	49.000	Anas_platyrhynchos
ENSSFOG00015015507	smn1	98	53.597	ENSACAG00000010017	-	96	53.169	Anolis_carolinensis
ENSSFOG00015015507	smn1	96	46.975	ENSANAG00000032133	-	95	48.399	Aotus_nancymaae
ENSSFOG00015015507	smn1	97	54.448	ENSACLG00000007308	smn1	92	59.341	Astatotilapia_calliptera
ENSSFOG00015015507	smn1	100	65.248	ENSAMXG00000013884	smn1	100	66.667	Astyanax_mexicanus
ENSSFOG00015015507	smn1	94	51.071	ENSBTAG00000005743	SMN2	93	50.545	Bos_taurus
ENSSFOG00015015507	smn1	94	53.659	ENSCJAG00000016290	-	90	53.659	Callithrix_jacchus
ENSSFOG00015015507	smn1	94	51.493	ENSCAFG00000007812	SMN	93	50.542	Canis_familiaris
ENSSFOG00015015507	smn1	94	51.493	ENSCAFG00020019229	-	86	50.549	Canis_lupus_dingo
ENSSFOG00015015507	smn1	94	50.530	ENSCHIG00000015559	-	91	50.903	Capra_hircus
ENSSFOG00015015507	smn1	94	53.469	ENSTSYG00000012058	-	92	53.469	Carlito_syrichta
ENSSFOG00015015507	smn1	72	45.714	ENSCAPG00000011021	-	84	45.405	Cavia_aperea
ENSSFOG00015015507	smn1	95	49.821	ENSCPOG00000036973	-	92	50.365	Cavia_porcellus
ENSSFOG00015015507	smn1	95	48.944	ENSCPOG00000012328	-	93	50.725	Cavia_porcellus
ENSSFOG00015015507	smn1	94	53.659	ENSCCAG00000018127	-	90	53.659	Cebus_capucinus
ENSSFOG00015015507	smn1	94	53.659	ENSCATG00000037002	-	90	53.659	Cercocebus_atys
ENSSFOG00015015507	smn1	94	49.412	ENSCLAG00000000284	-	91	52.590	Chinchilla_lanigera
ENSSFOG00015015507	smn1	94	52.347	ENSCSAG00000015688	-	91	51.625	Chlorocebus_sabaeus
ENSSFOG00015015507	smn1	68	76.667	ENSCHOG00000007346	-	100	46.215	Choloepus_hoffmanni
ENSSFOG00015015507	smn1	96	57.875	ENSCPBG00000010968	-	97	56.538	Chrysemys_picta_bellii
ENSSFOG00015015507	smn1	94	48.302	ENSCANG00000033324	-	90	50.000	Colobus_angolensis_palliatus
ENSSFOG00015015507	smn1	94	54.878	ENSCANG00000038242	-	93	52.874	Colobus_angolensis_palliatus
ENSSFOG00015015507	smn1	69	47.475	ENSCGRG00001016998	-	91	41.199	Cricetulus_griseus_chok1gshd
ENSSFOG00015015507	smn1	94	53.285	ENSCGRG00001017959	-	93	53.285	Cricetulus_griseus_chok1gshd
ENSSFOG00015015507	smn1	94	53.285	ENSCGRG00000007698	Smn1	93	53.285	Cricetulus_griseus_crigri
ENSSFOG00015015507	smn1	97	52.297	ENSCSEG00000015227	smn1	99	54.895	Cynoglossus_semilaevis
ENSSFOG00015015507	smn1	100	58.478	ENSCVAG00000007498	smn1	100	59.930	Cyprinodon_variegatus
ENSSFOG00015015507	smn1	100	63.475	ENSDARG00000018494	smn1	100	64.311	Danio_rerio
ENSSFOG00015015507	smn1	56	53.793	ENSDNOG00000045949	-	79	47.486	Dasypus_novemcinctus
ENSSFOG00015015507	smn1	82	46.250	ENSDNOG00000007283	-	83	48.780	Dasypus_novemcinctus
ENSSFOG00015015507	smn1	92	42.857	ENSDORG00000007082	Smn1	90	43.774	Dipodomys_ordii
ENSSFOG00015015507	smn1	59	49.045	ENSETEG00000001406	-	75	49.359	Echinops_telfairi
ENSSFOG00015015507	smn1	96	41.754	ENSEBUG00000011902	smn1	76	60.870	Eptatretus_burgeri
ENSSFOG00015015507	smn1	88	47.710	ENSEASG00005018000	-	89	46.565	Equus_asinus_asinus
ENSSFOG00015015507	smn1	94	51.799	ENSECAG00000015215	-	93	50.719	Equus_caballus
ENSSFOG00015015507	smn1	88	48.496	ENSEEUG00000015777	-	100	48.450	Erinaceus_europaeus
ENSSFOG00015015507	smn1	100	63.441	ENSELUG00000018067	smn1	100	63.082	Esox_lucius
ENSSFOG00015015507	smn1	94	53.036	ENSFCAG00000028292	SMN	92	51.807	Felis_catus
ENSSFOG00015015507	smn1	95	57.836	ENSFALG00000012320	-	95	55.094	Ficedula_albicollis
ENSSFOG00015015507	smn1	94	51.071	ENSFDAG00000017683	-	92	50.182	Fukomys_damarensis
ENSSFOG00015015507	smn1	97	55.000	ENSFHEG00000018508	smn1	100	60.498	Fundulus_heteroclitus
ENSSFOG00015015507	smn1	100	57.500	ENSGMOG00000017279	smn1	98	55.172	Gadus_morhua
ENSSFOG00015015507	smn1	97	58.456	ENSGALG00000002430	SMN	99	55.755	Gallus_gallus
ENSSFOG00015015507	smn1	100	61.832	ENSGAFG00000009501	smn1	100	61.832	Gambusia_affinis
ENSSFOG00015015507	smn1	100	62.278	ENSGACG00000010584	smn1	97	61.922	Gasterosteus_aculeatus
ENSSFOG00015015507	smn1	99	36.567	ENSGAGG00000013639	-	97	38.462	Gopherus_agassizii
ENSSFOG00015015507	smn1	96	58.824	ENSGAGG00000011374	-	95	57.519	Gopherus_agassizii
ENSSFOG00015015507	smn1	90	53.138	ENSGGOG00000003872	-	93	53.361	Gorilla_gorilla
ENSSFOG00015015507	smn1	59	57.692	ENSGGOG00000026704	-	73	58.065	Gorilla_gorilla
ENSSFOG00015015507	smn1	100	56.537	ENSHBUG00000013987	smn1	100	59.091	Haplochromis_burtoni
ENSSFOG00015015507	smn1	94	50.181	ENSHGLG00000001905	-	94	47.794	Heterocephalus_glaber_female
ENSSFOG00015015507	smn1	94	51.282	ENSHGLG00000001018	-	92	49.451	Heterocephalus_glaber_female
ENSSFOG00015015507	smn1	94	51.282	ENSHGLG00100011252	-	92	49.451	Heterocephalus_glaber_male
ENSSFOG00015015507	smn1	92	49.815	ENSHGLG00100018676	-	96	47.368	Heterocephalus_glaber_male
ENSSFOG00015015507	smn1	93	55.474	ENSHCOG00000017136	smn1	89	56.429	Hippocampus_comes
ENSSFOG00015015507	smn1	98	63.768	ENSIPUG00000012580	smn1	87	63.768	Ictalurus_punctatus
ENSSFOG00015015507	smn1	91	49.805	ENSSTOG00000012288	-	93	51.538	Ictidomys_tridecemlineatus
ENSSFOG00015015507	smn1	50	49.606	ENSJJAG00000014853	-	79	47.134	Jaculus_jaculus
ENSSFOG00015015507	smn1	100	59.011	ENSKMAG00000007239	smn1	100	59.011	Kryptolebias_marmoratus
ENSSFOG00015015507	smn1	100	59.655	ENSLBEG00000022550	smn1	100	60.702	Labrus_bergylta
ENSSFOG00015015507	smn1	99	38.144	ENSLACG00000009808	-	96	39.527	Latimeria_chalumnae
ENSSFOG00015015507	smn1	100	32.168	ENSLOCG00000000801	-	96	30.986	Lepisosteus_oculatus
ENSSFOG00015015507	smn1	100	63.218	ENSLOCG00000011339	smn1	100	63.218	Lepisosteus_oculatus
ENSSFOG00015015507	smn1	94	49.640	ENSLAFG00000003425	-	99	44.295	Loxodonta_africana
ENSSFOG00015015507	smn1	94	49.458	ENSMFAG00000008812	-	91	49.097	Macaca_fascicularis
ENSSFOG00015015507	smn1	94	54.472	ENSMFAG00000031523	SMN1	95	50.000	Macaca_fascicularis
ENSSFOG00015015507	smn1	94	54.472	ENSMMUG00000020214	SMN1	90	54.472	Macaca_mulatta
ENSSFOG00015015507	smn1	94	49.097	ENSMMUG00000030594	-	91	48.736	Macaca_mulatta
ENSSFOG00015015507	smn1	94	54.472	ENSMNEG00000035094	-	90	54.472	Macaca_nemestrina
ENSSFOG00015015507	smn1	76	39.648	ENSMNEG00000036423	-	71	42.703	Macaca_nemestrina
ENSSFOG00015015507	smn1	94	54.472	ENSMLEG00000041902	-	91	54.472	Mandrillus_leucophaeus
ENSSFOG00015015507	smn1	100	60.208	ENSMAMG00000011034	smn1	100	60.208	Mastacembelus_armatus
ENSSFOG00015015507	smn1	100	55.903	ENSMZEG00005013634	smn1	100	59.091	Maylandia_zebra
ENSSFOG00015015507	smn1	71	51.724	ENSMGAG00000008889	-	99	50.246	Meleagris_gallopavo
ENSSFOG00015015507	smn1	94	51.460	ENSMAUG00000010262	Smn1	93	51.825	Mesocricetus_auratus
ENSSFOG00015015507	smn1	79	44.643	ENSMICG00000034708	-	87	47.556	Microcebus_murinus
ENSSFOG00015015507	smn1	94	52.747	ENSMOCG00000017833	Smn1	93	52.555	Microtus_ochrogaster
ENSSFOG00015015507	smn1	95	57.915	ENSMMOG00000005504	smn1	97	58.301	Mola_mola
ENSSFOG00015015507	smn1	94	56.827	ENSMODG00000001436	-	92	56.180	Monodelphis_domestica
ENSSFOG00015015507	smn1	100	61.592	ENSMALG00000008025	smn1	100	60.137	Monopterus_albus
ENSSFOG00015015507	smn1	94	52.364	MGP_CAROLIEiJ_G0018836	Smn1	93	52.434	Mus_caroli
ENSSFOG00015015507	smn1	94	52.364	ENSMUSG00000021645	Smn1	93	52.000	Mus_musculus
ENSSFOG00015015507	smn1	94	52.030	MGP_PahariEiJ_G0015911	Smn1	93	53.114	Mus_pahari
ENSSFOG00015015507	smn1	94	51.636	MGP_SPRETEiJ_G0019718	Smn1	93	52.000	Mus_spretus
ENSSFOG00015015507	smn1	92	50.558	ENSMPUG00000014470	-	93	50.929	Mustela_putorius_furo
ENSSFOG00015015507	smn1	94	51.079	ENSMLUG00000010603	-	89	49.470	Myotis_lucifugus
ENSSFOG00015015507	smn1	95	51.613	ENSNGAG00000019833	Smn1	93	51.282	Nannospalax_galili
ENSSFOG00015015507	smn1	100	57.292	ENSNBRG00000023000	smn1	100	61.246	Neolamprologus_brichardi
ENSSFOG00015015507	smn1	94	53.226	ENSNLEG00000004454	-	90	53.226	Nomascus_leucogenys
ENSSFOG00015015507	smn1	77	47.297	ENSMEUG00000011393	-	84	52.381	Notamacropus_eugenii
ENSSFOG00015015507	smn1	88	50.769	ENSOPRG00000002015	-	99	48.425	Ochotona_princeps
ENSSFOG00015015507	smn1	91	51.145	ENSODEG00000015976	-	91	49.630	Octodon_degus
ENSSFOG00015015507	smn1	100	56.944	ENSONIG00000011799	smn1	100	60.900	Oreochromis_niloticus
ENSSFOG00015015507	smn1	95	54.182	ENSOANG00000001626	-	95	54.444	Ornithorhynchus_anatinus
ENSSFOG00015015507	smn1	92	43.636	ENSOCUG00000025183	-	75	45.933	Oryctolagus_cuniculus
ENSSFOG00015015507	smn1	94	51.636	ENSOCUG00000026649	-	92	49.638	Oryctolagus_cuniculus
ENSSFOG00015015507	smn1	94	52.593	ENSOCUG00000017097	-	92	50.929	Oryctolagus_cuniculus
ENSSFOG00015015507	smn1	100	58.657	ENSORLG00000010552	smn1	100	63.028	Oryzias_latipes
ENSSFOG00015015507	smn1	100	64.615	ENSORLG00020007936	smn1	100	64.615	Oryzias_latipes_hni
ENSSFOG00015015507	smn1	100	57.746	ENSORLG00015022425	smn1	100	63.158	Oryzias_latipes_hsok
ENSSFOG00015015507	smn1	100	59.441	ENSOMEG00000007824	smn1	100	63.636	Oryzias_melastigma
ENSSFOG00015015507	smn1	91	44.697	ENSOGAG00000031414	-	92	44.403	Otolemur_garnettii
ENSSFOG00015015507	smn1	94	49.466	ENSOARG00000005425	-	97	49.270	Ovis_aries
ENSSFOG00015015507	smn1	94	53.629	ENSPPAG00000036640	-	90	53.629	Pan_paniscus
ENSSFOG00015015507	smn1	94	53.036	ENSPPRG00000005575	-	92	51.807	Panthera_pardus
ENSSFOG00015015507	smn1	94	53.036	ENSPTIG00000007745	-	92	51.807	Panthera_tigris_altaica
ENSSFOG00015015507	smn1	94	53.226	ENSPTRG00000016955	-	90	53.441	Pan_troglodytes
ENSSFOG00015015507	smn1	94	51.613	ENSPANG00000000253	-	91	51.311	Papio_anubis
ENSSFOG00015015507	smn1	94	54.472	ENSPANG00000013601	-	90	54.472	Papio_anubis
ENSSFOG00015015507	smn1	100	70.656	ENSPKIG00000011096	smn1	100	69.498	Paramormyrops_kingsleyae
ENSSFOG00015015507	smn1	92	55.939	ENSPSIG00000014787	-	86	54.231	Pelodiscus_sinensis
ENSSFOG00015015507	smn1	100	55.282	ENSPMGG00000012285	smn1	97	58.647	Periophthalmus_magnuspinnatus
ENSSFOG00015015507	smn1	95	39.568	ENSPMAG00000005004	smn1	93	35.075	Petromyzon_marinus
ENSSFOG00015015507	smn1	94	57.934	ENSPCIG00000025764	-	93	56.554	Phascolarctos_cinereus
ENSSFOG00015015507	smn1	100	60.702	ENSPFOG00000007786	smn1	100	60.069	Poecilia_formosa
ENSSFOG00015015507	smn1	100	62.548	ENSPLAG00000012071	smn1	100	61.832	Poecilia_latipinna
ENSSFOG00015015507	smn1	100	62.162	ENSPMEG00000017085	smn1	100	61.450	Poecilia_mexicana
ENSSFOG00015015507	smn1	100	62.595	ENSPREG00000005824	smn1	100	62.595	Poecilia_reticulata
ENSSFOG00015015507	smn1	91	49.815	ENSPPYG00000015533	-	95	49.071	Pongo_abelii
ENSSFOG00015015507	smn1	63	73.077	ENSPPYG00000019189	-	99	38.034	Pongo_abelii
ENSSFOG00015015507	smn1	91	52.015	ENSPCAG00000004187	-	98	50.382	Procavia_capensis
ENSSFOG00015015507	smn1	68	48.889	ENSPCOG00000022307	-	64	56.738	Propithecus_coquereli
ENSSFOG00015015507	smn1	94	49.627	ENSPVAG00000005977	-	92	50.178	Pteropus_vampyrus
ENSSFOG00015015507	smn1	100	57.292	ENSPNYG00000014148	smn1	100	61.246	Pundamilia_nyererei
ENSSFOG00015015507	smn1	100	67.742	ENSPNAG00000014007	smn1	87	67.742	Pygocentrus_nattereri
ENSSFOG00015015507	smn1	96	51.071	ENSRNOG00000018067	Smn1	95	50.890	Rattus_norvegicus
ENSSFOG00015015507	smn1	91	48.800	ENSRBIG00000036775	-	88	49.587	Rhinopithecus_bieti
ENSSFOG00015015507	smn1	94	54.878	ENSRBIG00000037052	-	90	54.878	Rhinopithecus_bieti
ENSSFOG00015015507	smn1	94	54.878	ENSRROG00000039399	-	90	54.878	Rhinopithecus_roxellana
ENSSFOG00015015507	smn1	94	48.800	ENSRROG00000031088	-	91	48.837	Rhinopithecus_roxellana
ENSSFOG00015015507	smn1	55	54.054	ENSSBOG00000020112	-	87	44.747	Saimiri_boliviensis_boliviensis
ENSSFOG00015015507	smn1	94	53.659	ENSSBOG00000011665	-	90	53.659	Saimiri_boliviensis_boliviensis
ENSSFOG00015015507	smn1	94	57.934	ENSSHAG00000001499	-	98	54.307	Sarcophilus_harrisii
ENSSFOG00015015507	smn1	100	53.378	ENSSMAG00000007922	smn1	100	59.649	Scophthalmus_maximus
ENSSFOG00015015507	smn1	100	61.775	ENSSDUG00000018533	smn1	100	62.116	Seriola_dumerili
ENSSFOG00015015507	smn1	100	62.116	ENSSLDG00000021135	smn1	100	62.457	Seriola_lalandi_dorsalis
ENSSFOG00015015507	smn1	97	57.762	ENSSPUG00000000373	-	99	55.634	Sphenodon_punctatus
ENSSFOG00015015507	smn1	100	60.223	ENSSPAG00000004345	smn1	100	60.345	Stegastes_partitus
ENSSFOG00015015507	smn1	94	51.273	ENSSSCG00000016970	-	92	52.536	Sus_scrofa
ENSSFOG00015015507	smn1	94	41.699	ENSSSCG00000029127	-	91	41.250	Sus_scrofa
ENSSFOG00015015507	smn1	91	51.460	ENSTGUG00000001548	-	95	52.652	Taeniopygia_guttata
ENSSFOG00015015507	smn1	100	52.669	ENSTRUG00000000736	smn	100	56.584	Takifugu_rubripes
ENSSFOG00015015507	smn1	97	58.007	ENSTNIG00000009892	smn1	98	56.940	Tetraodon_nigroviridis
ENSSFOG00015015507	smn1	60	56.250	ENSTBEG00000002399	-	77	57.233	Tupaia_belangeri
ENSSFOG00015015507	smn1	61	56.522	ENSTTRG00000005080	-	92	52.518	Tursiops_truncatus
ENSSFOG00015015507	smn1	60	57.233	ENSUAMG00000024947	-	58	57.233	Ursus_americanus
ENSSFOG00015015507	smn1	94	50.909	ENSUMAG00000007842	-	69	51.636	Ursus_maritimus
ENSSFOG00015015507	smn1	67	74.074	ENSVPAG00000009887	-	93	47.893	Vicugna_pacos
ENSSFOG00015015507	smn1	94	51.493	ENSVVUG00000006934	-	93	50.542	Vulpes_vulpes
ENSSFOG00015015507	smn1	95	59.707	ENSXETG00000018189	smn2	95	58.363	Xenopus_tropicalis
ENSSFOG00015015507	smn1	52	63.636	ENSXETG00000004912	-	79	63.636	Xenopus_tropicalis
ENSSFOG00015015507	smn1	100	60.687	ENSXMAG00000001521	smn1	100	60.687	Xiphophorus_maculatus