EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSFOG00015015803 (Gene tree)
Gene ID
108936530
Gene Symbol
CPSF6 (1 of many)
Alias
CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7
Full Name
cleavage and polyadenylation specificity factor subunit 6-like
Gene Type
protein_coding
Species
Scleropages_formosus
Status
putative
Strand
Minus strand
Length
9869 bases
Position
chrKV411121.1:183260-193128
Accession
108936530
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSFOP00015024568RRM_1PF00076.226.2e-0811
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSFOT00015024836CPSF6 (1 of many)-2011914XM_018755943ENSSFOP00015024568545 (aa)XP_018611459A0A1W5A6I1
Gene Model
Click here to download ENSSFOG00015015803's gene model file
Pathways
Pathway IDPathway NameSource
sfm03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015015803's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSFOG00015015803CPSF69485.797ENSSFOG00015001688CPSF68286.756
ENSSFOG00015015803CPSF66541.899ENSSFOG00015010288cpsf77840.426
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSFOG00015015803CPSF69480.880ENSG00000111605CPSF69583.397Homo_sapiens
ENSSFOG00015015803CPSF66675.000ENSG00000149532CPSF710051.333Homo_sapiens
ENSSFOG00015015803CPSF69479.008ENSAMEG00000011781CPSF69481.143Ailuropoda_melanoleuca
ENSSFOG00015015803CPSF67537.021ENSAOCG00000012357CPSF76153.571Amphiprion_ocellaris
ENSSFOG00015015803CPSF65177.113ENSACAG00000004381CPSF65377.778Anolis_carolinensis
ENSSFOG00015015803CPSF69180.396ENSANAG00000019240CPSF69383.004Aotus_nancymaae
ENSSFOG00015015803CPSF66646.635ENSANAG00000024635CPSF77552.850Aotus_nancymaae
ENSSFOG00015015803CPSF66393.413ENSAMXG00000016745CPSF67593.373Astyanax_mexicanus
ENSSFOG00015015803CPSF69480.880ENSBTAG00000007323CPSF69583.397Bos_taurus
ENSSFOG00015015803CPSF66650.279ENSBTAG00000015263CPSF77556.647Bos_taurus
ENSSFOG00015015803CPSF67355.118ENSCJAG00000019282CPSF78856.250Callithrix_jacchus
ENSSFOG00015015803CPSF69480.880ENSCJAG00000001798CPSF69583.397Callithrix_jacchus
ENSSFOG00015015803CPSF69180.357ENSCAFG00000000424CPSF69480.792Canis_familiaris
ENSSFOG00015015803CPSF66650.279ENSCAFG00000016152CPSF77557.225Canis_familiaris
ENSSFOG00015015803CPSF69480.880ENSCAFG00020016950CPSF69583.397Canis_lupus_dingo
ENSSFOG00015015803CPSF66650.279ENSCAFG00020012753CPSF77557.225Canis_lupus_dingo
ENSSFOG00015015803CPSF66650.279ENSCHIG00000014655CPSF77556.647Capra_hircus
ENSSFOG00015015803CPSF69480.880ENSCHIG00000010792CPSF69583.397Capra_hircus
ENSSFOG00015015803CPSF66650.279ENSTSYG00000010138-7557.225Carlito_syrichta
ENSSFOG00015015803CPSF69180.318ENSTSYG00000008591CPSF69182.937Carlito_syrichta
ENSSFOG00015015803CPSF65458.621ENSCAPG00000006384CPSF77056.647Cavia_aperea
ENSSFOG00015015803CPSF65858.621ENSCPOG00000009980CPSF77556.647Cavia_porcellus
ENSSFOG00015015803CPSF69480.880ENSCPOG00000015201CPSF69583.397Cavia_porcellus
ENSSFOG00015015803CPSF66650.279ENSCCAG00000032367CPSF77556.647Cebus_capucinus
ENSSFOG00015015803CPSF69480.880ENSCCAG00000028149CPSF69583.397Cebus_capucinus
ENSSFOG00015015803CPSF69480.880ENSCATG00000039288CPSF69583.397Cercocebus_atys
ENSSFOG00015015803CPSF66749.744ENSCATG00000042801CPSF77756.647Cercocebus_atys
ENSSFOG00015015803CPSF65858.621ENSCLAG00000003174CPSF77556.069Chinchilla_lanigera
ENSSFOG00015015803CPSF69180.716ENSCLAG00000010149CPSF69482.937Chinchilla_lanigera
ENSSFOG00015015803CPSF66749.744ENSCSAG00000006414CPSF77756.647Chlorocebus_sabaeus
ENSSFOG00015015803CPSF69480.880ENSCPBG00000013322CPSF69583.397Chrysemys_picta_bellii
ENSSFOG00015015803CPSF69180.318ENSCANG00000037294CPSF69482.937Colobus_angolensis_palliatus
ENSSFOG00015015803CPSF66650.769ENSCGRG00001020382Cpsf77557.225Cricetulus_griseus_chok1gshd
ENSSFOG00015015803CPSF69481.262ENSCGRG00001018082Cpsf69583.397Cricetulus_griseus_chok1gshd
ENSSFOG00015015803CPSF66750.769ENSCGRG00000017954Cpsf77757.225Cricetulus_griseus_crigri
ENSSFOG00015015803CPSF69379.151ENSCGRG00000016909Cpsf69482.937Cricetulus_griseus_crigri
ENSSFOG00015015803CPSF66339.130ENSCSEG00000001956CPSF75746.809Cynoglossus_semilaevis
ENSSFOG00015015803CPSF69481.118ENSCSEG00000008967cpsf65278.746Cynoglossus_semilaevis
ENSSFOG00015015803CPSF68337.619ENSCVAG00000007392CPSF78144.521Cyprinodon_variegatus
ENSSFOG00015015803CPSF65172.125ENSCVAG00000014857cpsf65275.958Cyprinodon_variegatus
ENSSFOG00015015803CPSF65179.577ENSDARG00000018618cpsf65280.420Danio_rerio
ENSSFOG00015015803CPSF67355.906ENSDNOG00000018517CPSF78856.818Dasypus_novemcinctus
ENSSFOG00015015803CPSF69481.262ENSDNOG00000015292CPSF69583.397Dasypus_novemcinctus
ENSSFOG00015015803CPSF69180.716ENSDORG00000002950Cpsf69282.937Dipodomys_ordii
ENSSFOG00015015803CPSF66651.042ENSETEG00000003765CPSF77456.395Echinops_telfairi
ENSSFOG00015015803CPSF66650.279ENSEASG00005008196CPSF77557.225Equus_asinus_asinus
ENSSFOG00015015803CPSF69480.880ENSEASG00005008066CPSF69583.397Equus_asinus_asinus
ENSSFOG00015015803CPSF66676.250ENSECAG00000018521CPSF79156.818Equus_caballus
ENSSFOG00015015803CPSF69480.880ENSECAG00000015988CPSF69583.397Equus_caballus
ENSSFOG00015015803CPSF65059.350ENSEEUG00000005966-6661.017Erinaceus_europaeus
ENSSFOG00015015803CPSF67355.906ENSFCAG00000013677CPSF78656.818Felis_catus
ENSSFOG00015015803CPSF69480.880ENSFCAG00000002855CPSF69583.397Felis_catus
ENSSFOG00015015803CPSF67249.160ENSFALG00000011927CPSF77658.382Ficedula_albicollis
ENSSFOG00015015803CPSF69180.556ENSFALG00000010157CPSF69482.772Ficedula_albicollis
ENSSFOG00015015803CPSF69478.311ENSFDAG00000002281CPSF69480.843Fukomys_damarensis
ENSSFOG00015015803CPSF66650.256ENSFDAG00000003919CPSF77556.647Fukomys_damarensis
ENSSFOG00015015803CPSF65173.333ENSFHEG00000019693cpsf65374.751Fundulus_heteroclitus
ENSSFOG00015015803CPSF65491.736ENSGMOG00000012951cpsf65494.262Gadus_morhua
ENSSFOG00015015803CPSF66353.073ENSGALG00000040962CPSF76360.345Gallus_gallus
ENSSFOG00015015803CPSF69480.880ENSGAGG00000010228CPSF69583.397Gopherus_agassizii
ENSSFOG00015015803CPSF69481.262ENSGGOG00000008211CPSF69583.397Gorilla_gorilla
ENSSFOG00015015803CPSF69480.880ENSHGLG00000000792CPSF69583.397Heterocephalus_glaber_female
ENSSFOG00015015803CPSF66750.256ENSHGLG00000019090-7756.647Heterocephalus_glaber_female
ENSSFOG00015015803CPSF69478.161ENSHGLG00100013861CPSF69482.937Heterocephalus_glaber_male
ENSSFOG00015015803CPSF69539.179ENSHGLG00100013933-7856.647Heterocephalus_glaber_male
ENSSFOG00015015803CPSF65175.088ENSHCOG00000014555cpsf65276.655Hippocampus_comes
ENSSFOG00015015803CPSF66650.279ENSSTOG00000007708CPSF77557.225Ictidomys_tridecemlineatus
ENSSFOG00015015803CPSF69180.318ENSSTOG00000014133CPSF69482.937Ictidomys_tridecemlineatus
ENSSFOG00015015803CPSF69180.556ENSJJAG00000014647Cpsf69482.772Jaculus_jaculus
ENSSFOG00015015803CPSF66750.256ENSJJAG00000019390Cpsf77757.225Jaculus_jaculus
ENSSFOG00015015803CPSF69478.695ENSLACG00000008625CPSF69580.843Latimeria_chalumnae
ENSSFOG00015015803CPSF69433.522ENSLACG00000005542CPSF77044.937Latimeria_chalumnae
ENSSFOG00015015803CPSF66693.373ENSLOCG00000016190cpsf66693.373Lepisosteus_oculatus
ENSSFOG00015015803CPSF69480.880ENSLAFG00000030413CPSF69583.397Loxodonta_africana
ENSSFOG00015015803CPSF66650.769ENSLAFG00000032084CPSF77557.803Loxodonta_africana
ENSSFOG00015015803CPSF69480.880ENSMFAG00000045318CPSF69583.397Macaca_fascicularis
ENSSFOG00015015803CPSF66650.279ENSMFAG00000001401CPSF77556.647Macaca_fascicularis
ENSSFOG00015015803CPSF66749.744ENSMMUG00000015280CPSF77756.647Macaca_mulatta
ENSSFOG00015015803CPSF69481.262ENSMMUG00000002921CPSF69583.397Macaca_mulatta
ENSSFOG00015015803CPSF66749.744ENSMNEG00000029585CPSF77756.647Macaca_nemestrina
ENSSFOG00015015803CPSF69480.880ENSMNEG00000036311CPSF69583.397Macaca_nemestrina
ENSSFOG00015015803CPSF69180.318ENSMLEG00000003957CPSF69482.937Mandrillus_leucophaeus
ENSSFOG00015015803CPSF66650.279ENSMLEG00000031269CPSF77356.647Mandrillus_leucophaeus
ENSSFOG00015015803CPSF69541.039ENSMGAG00000004876CPSF76261.905Meleagris_gallopavo
ENSSFOG00015015803CPSF69480.880ENSMAUG00000013240Cpsf69583.397Mesocricetus_auratus
ENSSFOG00015015803CPSF66650.279ENSMAUG00000013020Cpsf77557.225Mesocricetus_auratus
ENSSFOG00015015803CPSF69481.262ENSMICG00000007385-9583.397Microcebus_murinus
ENSSFOG00015015803CPSF66650.279ENSMICG00000013788CPSF77557.225Microcebus_murinus
ENSSFOG00015015803CPSF69481.262ENSMOCG00000013982Cpsf69583.397Microtus_ochrogaster
ENSSFOG00015015803CPSF66650.279ENSMOCG00000000072Cpsf77557.225Microtus_ochrogaster
ENSSFOG00015015803CPSF66652.551ENSMODG00000020364CPSF76950.299Monodelphis_domestica
ENSSFOG00015015803CPSF69481.071ENSMODG00000007123CPSF69583.588Monodelphis_domestica
ENSSFOG00015015803CPSF67492.268ENSMALG00000014908cpsf67793.605Monopterus_albus
ENSSFOG00015015803CPSF69481.262MGP_CAROLIEiJ_G0015834Cpsf69583.397Mus_caroli
ENSSFOG00015015803CPSF66650.279MGP_CAROLIEiJ_G0022690Cpsf77557.225Mus_caroli
ENSSFOG00015015803CPSF66650.279ENSMUSG00000034820Cpsf77557.225Mus_musculus
ENSSFOG00015015803CPSF69481.262ENSMUSG00000055531Cpsf69583.397Mus_musculus
ENSSFOG00015015803CPSF68177.465MGP_PahariEiJ_G0031253Cpsf65677.431Mus_pahari
ENSSFOG00015015803CPSF66650.279MGP_PahariEiJ_G0014184Cpsf77557.225Mus_pahari
ENSSFOG00015015803CPSF69481.262MGP_SPRETEiJ_G0016657Cpsf69583.397Mus_spretus
ENSSFOG00015015803CPSF66650.279MGP_SPRETEiJ_G0023604Cpsf77557.225Mus_spretus
ENSSFOG00015015803CPSF66249.231ENSMPUG00000014163CPSF76956.069Mustela_putorius_furo
ENSSFOG00015015803CPSF69178.571ENSMPUG00000017502CPSF69479.231Mustela_putorius_furo
ENSSFOG00015015803CPSF66886.620ENSMLUG00000028728-9378.571Myotis_lucifugus
ENSSFOG00015015803CPSF66678.977ENSMLUG00000023960-7977.222Myotis_lucifugus
ENSSFOG00015015803CPSF66750.256ENSMLUG00000013278CPSF77757.225Myotis_lucifugus
ENSSFOG00015015803CPSF69476.923ENSMLUG00000004172-9479.079Myotis_lucifugus
ENSSFOG00015015803CPSF66650.279ENSNGAG00000005031Cpsf77557.225Nannospalax_galili
ENSSFOG00015015803CPSF69481.262ENSNGAG00000015901Cpsf69583.397Nannospalax_galili
ENSSFOG00015015803CPSF69480.880ENSNLEG00000003798CPSF69583.397Nomascus_leucogenys
ENSSFOG00015015803CPSF66650.279ENSNLEG00000002529CPSF76856.647Nomascus_leucogenys
ENSSFOG00015015803CPSF66652.604ENSMEUG00000002261CPSF77158.382Notamacropus_eugenii
ENSSFOG00015015803CPSF69480.725ENSODEG00000018399-9582.824Octodon_degus
ENSSFOG00015015803CPSF66649.721ENSODEG00000002610CPSF77556.250Octodon_degus
ENSSFOG00015015803CPSF69541.822ENSOCUG00000024726CPSF77556.647Oryctolagus_cuniculus
ENSSFOG00015015803CPSF69478.585ENSORLG00000013893cpsf69582.095Oryzias_latipes
ENSSFOG00015015803CPSF69478.585ENSORLG00020016593cpsf69582.095Oryzias_latipes_hni
ENSSFOG00015015803CPSF69478.585ENSORLG00015015558cpsf69582.095Oryzias_latipes_hsok
ENSSFOG00015015803CPSF69484.000ENSOMEG00000009425cpsf69584.411Oryzias_melastigma
ENSSFOG00015015803CPSF66650.279ENSOGAG00000027958CPSF76957.225Otolemur_garnettii
ENSSFOG00015015803CPSF69178.373ENSOGAG00000031988CPSF69480.594Otolemur_garnettii
ENSSFOG00015015803CPSF69540.399ENSOARG00000012937CPSF76556.647Ovis_aries
ENSSFOG00015015803CPSF66650.279ENSPPAG00000028232CPSF77456.647Pan_paniscus
ENSSFOG00015015803CPSF69480.880ENSPPRG00000021620CPSF69583.397Panthera_pardus
ENSSFOG00015015803CPSF66650.279ENSPPRG00000008538CPSF77157.225Panthera_pardus
ENSSFOG00015015803CPSF66650.279ENSPTIG00000021699CPSF77557.225Panthera_tigris_altaica
ENSSFOG00015015803CPSF68579.618ENSPTIG00000004079CPSF69482.415Panthera_tigris_altaica
ENSSFOG00015015803CPSF69481.262ENSPTRG00000005205CPSF69583.397Pan_troglodytes
ENSSFOG00015015803CPSF66650.279ENSPTRG00000003742CPSF77556.647Pan_troglodytes
ENSSFOG00015015803CPSF69480.880ENSPANG00000011641CPSF69583.397Papio_anubis
ENSSFOG00015015803CPSF66650.279ENSPANG00000006037CPSF77356.647Papio_anubis
ENSSFOG00015015803CPSF69486.538ENSPKIG00000003081-9587.115Paramormyrops_kingsleyae
ENSSFOG00015015803CPSF66148.023ENSPKIG00000018054CPSF77545.213Paramormyrops_kingsleyae
ENSSFOG00015015803CPSF69180.517ENSPEMG00000007973Cpsf69482.738Peromyscus_maniculatus_bairdii
ENSSFOG00015015803CPSF66750.256ENSPEMG00000012648Cpsf77757.225Peromyscus_maniculatus_bairdii
ENSSFOG00015015803CPSF66950.276ENSPCIG00000002551CPSF78855.556Phascolarctos_cinereus
ENSSFOG00015015803CPSF69481.071ENSPCIG00000019063CPSF69583.588Phascolarctos_cinereus
ENSSFOG00015015803CPSF65175.958ENSPLAG00000005715cpsf65279.791Poecilia_latipinna
ENSSFOG00015015803CPSF65175.958ENSPMEG00000001353cpsf65279.791Poecilia_mexicana
ENSSFOG00015015803CPSF65175.958ENSPREG00000004417cpsf65379.791Poecilia_reticulata
ENSSFOG00015015803CPSF66650.279ENSPPYG00000003188CPSF77556.647Pongo_abelii
ENSSFOG00015015803CPSF69480.880ENSPPYG00000004756CPSF69583.397Pongo_abelii
ENSSFOG00015015803CPSF66650.279ENSPCOG00000011976CPSF77557.225Propithecus_coquereli
ENSSFOG00015015803CPSF69481.262ENSPCOG00000024384CPSF69583.397Propithecus_coquereli
ENSSFOG00015015803CPSF66650.256ENSPVAG00000010675CPSF77557.225Pteropus_vampyrus
ENSSFOG00015015803CPSF65182.042ENSPNAG00000024098CPSF65282.517Pygocentrus_nattereri
ENSSFOG00015015803CPSF65848.026ENSPNAG00000015073CPSF76947.273Pygocentrus_nattereri
ENSSFOG00015015803CPSF69481.071ENSRNOG00000005927Cpsf69583.588Rattus_norvegicus
ENSSFOG00015015803CPSF66750.000ENSRNOG00000020668Cpsf77757.225Rattus_norvegicus
ENSSFOG00015015803CPSF67355.118ENSRBIG00000031429CPSF79156.250Rhinopithecus_bieti
ENSSFOG00015015803CPSF69481.262ENSRBIG00000042827CPSF69583.397Rhinopithecus_bieti
ENSSFOG00015015803CPSF66650.279ENSRROG00000045009CPSF77556.647Rhinopithecus_roxellana
ENSSFOG00015015803CPSF69480.880ENSRROG00000042758CPSF69583.397Rhinopithecus_roxellana
ENSSFOG00015015803CPSF68579.618ENSSBOG00000010652CPSF69482.415Saimiri_boliviensis_boliviensis
ENSSFOG00015015803CPSF66650.279ENSSBOG00000018431CPSF77556.647Saimiri_boliviensis_boliviensis
ENSSFOG00015015803CPSF69177.559ENSSHAG00000006635CPSF69479.568Sarcophilus_harrisii
ENSSFOG00015015803CPSF66351.562ENSSHAG00000011964CPSF77258.960Sarcophilus_harrisii
ENSSFOG00015015803CPSF68288.976ENSSARG00000006743CPSF68087.795Sorex_araneus
ENSSFOG00015015803CPSF66652.604ENSSPUG00000019344CPSF76652.761Sphenodon_punctatus
ENSSFOG00015015803CPSF67355.906ENSSSCG00000013083CPSF78856.818Sus_scrofa
ENSSFOG00015015803CPSF69480.880ENSSSCG00000038031CPSF69583.397Sus_scrofa
ENSSFOG00015015803CPSF66354.444ENSTGUG00000006513CPSF77555.429Taeniopygia_guttata
ENSSFOG00015015803CPSF66249.231ENSTTRG00000011085CPSF77057.225Tursiops_truncatus
ENSSFOG00015015803CPSF68579.618ENSUAMG00000023492CPSF69482.415Ursus_americanus
ENSSFOG00015015803CPSF66650.279ENSUAMG00000017809CPSF77557.225Ursus_americanus
ENSSFOG00015015803CPSF68579.618ENSUMAG00000020779CPSF69482.415Ursus_maritimus
ENSSFOG00015015803CPSF66750.256ENSUMAG00000011825CPSF77757.225Ursus_maritimus
ENSSFOG00015015803CPSF67355.906ENSVVUG00000004939CPSF78856.818Vulpes_vulpes
ENSSFOG00015015803CPSF69742.096ENSXETG00000006715cpsf78237.591Xenopus_tropicalis
ENSSFOG00015015803CPSF65175.958ENSXCOG00000013423cpsf65279.791Xiphophorus_couchianus

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