EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSFOG00015015833 (Gene tree)
Gene ID
108934578
Gene Symbol
pabpn1l
Alias
-
Full Name
poly(A) binding protein nuclear 1 like%2C cytoplasmic
Gene Type
protein_coding
Species
Scleropages_formosus
Status
putative
Strand
Plus strand
Length
5454 bases
Position
chrKV411072.1:6764010-6769463
Accession
108934578
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSFOP00015024626RRM_1PF00076.221.2e-1611
ENSSFOP00015024616RRM_1PF00076.221.9e-1611
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSFOT00015024895-2849XM_018752494ENSSFOP00015024626215 (aa)XP_018608010A0A1W5A4V3
ENSSFOT00015024884-3308XM_018752493ENSSFOP00015024616262 (aa)XP_018608009A0A1W4ZWH5
Gene Model
Click here to download ENSSFOG00015015833's gene model file
Pathways
Pathway IDPathway NameSource
sfm03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015015833's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSFOG00015015833pabpn1l8566.486ENSSFOG00015012565pabpn16573.611
ENSSFOG00015015833pabpn1l7770.060ENSSFOG00015014718pabpn16174.648
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSFOG00015015833pabpn1l8066.667ENSG00000258643BCL2L2-PABPN15761.905Homo_sapiens
ENSSFOG00015015833pabpn1l8763.918ENSG00000100836PABPN19864.894Homo_sapiens
ENSSFOG00015015833pabpn1l8466.120ENSAPOG00000016425pabpn18064.516Acanthochromis_polyacanthus
ENSSFOG00015015833pabpn1l8264.865ENSAMEG00000007048BCL2L2-PABPN110061.905Ailuropoda_melanoleuca
ENSSFOG00015015833pabpn1l7768.235ENSACIG00000021744pabpn17371.875Amphilophus_citrinellus
ENSSFOG00015015833pabpn1l7768.862ENSAOCG00000015805pabpn18064.516Amphiprion_ocellaris
ENSSFOG00015015833pabpn1l7768.862ENSAPEG00000009623pabpn18064.516Amphiprion_percula
ENSSFOG00015015833pabpn1l7768.862ENSATEG00000020531pabpn16173.944Anabas_testudineus
ENSSFOG00015015833pabpn1l7767.630ENSACAG00000006185-6762.105Anolis_carolinensis
ENSSFOG00015015833pabpn1l8763.918ENSANAG00000024513-7560.096Aotus_nancymaae
ENSSFOG00015015833pabpn1l7767.836ENSACLG00000016374pabpn15171.429Astatotilapia_calliptera
ENSSFOG00015015833pabpn1l8466.848ENSAMXG00000000452pabpn17272.656Astyanax_mexicanus
ENSSFOG00015015833pabpn1l8763.918ENSBTAG00000006884PABPN16961.275Bos_taurus
ENSSFOG00015015833pabpn1l8067.630ENSBTAG00000050594-5773.611Bos_taurus
ENSSFOG00015015833pabpn1l8167.039ENSBTAG00000053753-7162.304Bos_taurus
ENSSFOG00015015833pabpn1l6850.336WBGene00003904pabp-27252.027Caenorhabditis_elegans
ENSSFOG00015015833pabpn1l7260.736ENSCJAG00000004407-8958.427Callithrix_jacchus
ENSSFOG00015015833pabpn1l8763.918ENSCJAG00000007960-7959.434Callithrix_jacchus
ENSSFOG00015015833pabpn1l8466.310ENSCAFG00000011482PABPN16860.096Canis_familiaris
ENSSFOG00015015833pabpn1l8763.918ENSCAFG00020006651-6860.096Canis_lupus_dingo
ENSSFOG00015015833pabpn1l8763.918ENSCAFG00020007298-6860.096Canis_lupus_dingo
ENSSFOG00015015833pabpn1l8763.918ENSCHIG00000012184PABPN16661.084Capra_hircus
ENSSFOG00015015833pabpn1l8066.667ENSTSYG00000033996BCL2L2-PABPN110060.112Carlito_syrichta
ENSSFOG00015015833pabpn1l6170.149ENSCAPG00000009461-9668.148Cavia_aperea
ENSSFOG00015015833pabpn1l8863.636ENSCPOG00000025574PABPN16860.577Cavia_porcellus
ENSSFOG00015015833pabpn1l8763.918ENSCCAG00000033954BCL2L2-PABPN17959.434Cebus_capucinus
ENSSFOG00015015833pabpn1l8763.918ENSCATG00000038536BCL2L2-PABPN17959.434Cercocebus_atys
ENSSFOG00015015833pabpn1l8649.091ENSCLAG00000012423PABPN15564.384Chinchilla_lanigera
ENSSFOG00015015833pabpn1l8762.371ENSCSAG00000016036PABPN16461.224Chlorocebus_sabaeus
ENSSFOG00015015833pabpn1l8259.677ENSCHOG00000004798BCL2L2-PABPN18355.440Choloepus_hoffmanni
ENSSFOG00015015833pabpn1l7263.804ENSCPBG00000026060-9863.218Chrysemys_picta_bellii
ENSSFOG00015015833pabpn1l6664.789ENSCING00000012468-6961.935Ciona_intestinalis
ENSSFOG00015015833pabpn1l6060.000ENSCSAVG00000002001-7760.000Ciona_savignyi
ENSSFOG00015015833pabpn1l8658.763ENSCANG00000030980-7453.398Colobus_angolensis_palliatus
ENSSFOG00015015833pabpn1l8066.667ENSCANG00000009750BCL2L2-PABPN110060.112Colobus_angolensis_palliatus
ENSSFOG00015015833pabpn1l8863.131ENSCGRG00001019696Pabpn110060.112Cricetulus_griseus_chok1gshd
ENSSFOG00015015833pabpn1l6871.812ENSCGRG00000011102Pabpn19171.429Cricetulus_griseus_crigri
ENSSFOG00015015833pabpn1l8366.120ENSCSEG00000008774pabpn16273.944Cynoglossus_semilaevis
ENSSFOG00015015833pabpn1l6774.306ENSCVAG00000003152pabpn16173.944Cyprinodon_variegatus
ENSSFOG00015015833pabpn1l8466.667ENSDARG00000045373pabpn17863.314Danio_rerio
ENSSFOG00015015833pabpn1l8266.667ENSDARG00000087996pabpn1l9668.987Danio_rerio
ENSSFOG00015015833pabpn1l8763.918ENSDNOG00000023682PABPN16860.096Dasypus_novemcinctus
ENSSFOG00015015833pabpn1l6065.152ENSDORG00000023928-9065.385Dipodomys_ordii
ENSSFOG00015015833pabpn1l8863.636ENSDORG00000028966-6463.265Dipodomys_ordii
ENSSFOG00015015833pabpn1l9750.230FBgn0005648Pabp28152.747Drosophila_melanogaster
ENSSFOG00015015833pabpn1l8763.492ENSEBUG00000002322pabpn16867.949Eptatretus_burgeri
ENSSFOG00015015833pabpn1l8763.918ENSEASG00005011716PABPN16860.096Equus_asinus_asinus
ENSSFOG00015015833pabpn1l8763.918ENSECAG00000011652PABPN16662.755Equus_caballus
ENSSFOG00015015833pabpn1l8165.746ENSEEUG00000012973-6960.396Erinaceus_europaeus
ENSSFOG00015015833pabpn1l7770.238ENSELUG00000022654pabpn16075.352Esox_lucius
ENSSFOG00015015833pabpn1l8763.918ENSFCAG00000031922PABPN16860.096Felis_catus
ENSSFOG00015015833pabpn1l7263.190ENSFDAG00000018381BCL2L2-PABPN110060.674Fukomys_damarensis
ENSSFOG00015015833pabpn1l7868.235ENSFHEG00000007215pabpn18362.304Fundulus_heteroclitus
ENSSFOG00015015833pabpn1l8464.674ENSGMOG00000003922pabpn16565.217Gadus_morhua
ENSSFOG00015015833pabpn1l6773.288ENSGALG00000052930-6555.310Gallus_gallus
ENSSFOG00015015833pabpn1l6873.288ENSGAFG00000017099pabpn16173.944Gambusia_affinis
ENSSFOG00015015833pabpn1l8664.171ENSGACG00000002167pabpn16172.848Gasterosteus_aculeatus
ENSSFOG00015015833pabpn1l8261.878ENSGGOG00000039675-7156.842Gorilla_gorilla
ENSSFOG00015015833pabpn1l8753.731ENSGGOG00000025919-9952.514Gorilla_gorilla
ENSSFOG00015015833pabpn1l8763.918ENSGGOG00000022683-7959.434Gorilla_gorilla
ENSSFOG00015015833pabpn1l7868.235ENSHBUG00000019523pabpn16173.944Haplochromis_burtoni
ENSSFOG00015015833pabpn1l8863.636ENSHGLG00000002927-9271.918Heterocephalus_glaber_female
ENSSFOG00015015833pabpn1l9157.071ENSHGLG00000018588-7056.853Heterocephalus_glaber_female
ENSSFOG00015015833pabpn1l7252.229ENSHGLG00000009842-7460.769Heterocephalus_glaber_female
ENSSFOG00015015833pabpn1l5570.588ENSHGLG00100018935-10060.227Heterocephalus_glaber_male
ENSSFOG00015015833pabpn1l9157.071ENSHGLG00100015565-7156.853Heterocephalus_glaber_male
ENSSFOG00015015833pabpn1l8067.232ENSHGLG00100006673-9271.918Heterocephalus_glaber_male
ENSSFOG00015015833pabpn1l7768.862ENSHCOG00000004655pabpn18063.784Hippocampus_comes
ENSSFOG00015015833pabpn1l7868.639ENSIPUG00000008085PABPN16174.648Ictalurus_punctatus
ENSSFOG00015015833pabpn1l7770.238ENSIPUG00000000180-8463.158Ictalurus_punctatus
ENSSFOG00015015833pabpn1l7262.577ENSSTOG00000029847BCL2L2-PABPN110060.112Ictidomys_tridecemlineatus
ENSSFOG00015015833pabpn1l7262.577ENSJJAG00000023507Gm2052110060.112Jaculus_jaculus
ENSSFOG00015015833pabpn1l8465.761ENSKMAG00000018748pabpn17661.224Kryptolebias_marmoratus
ENSSFOG00015015833pabpn1l8466.120ENSLBEG00000027266pabpn16173.944Labrus_bergylta
ENSSFOG00015015833pabpn1l8265.385ENSLACG00000000646pabpn18063.934Latimeria_chalumnae
ENSSFOG00015015833pabpn1l7984.706ENSLOCG00000004694pabpn1l8683.060Lepisosteus_oculatus
ENSSFOG00015015833pabpn1l8467.935ENSLOCG00000000796pabpn16766.120Lepisosteus_oculatus
ENSSFOG00015015833pabpn1l6366.901ENSLAFG00000031227-9763.014Loxodonta_africana
ENSSFOG00015015833pabpn1l8264.865ENSMFAG00000032183BCL2L2-PABPN110060.112Macaca_fascicularis
ENSSFOG00015015833pabpn1l6162.857ENSMFAG00000031355-9960.993Macaca_fascicularis
ENSSFOG00015015833pabpn1l8264.674ENSMMUG00000014747BCL2L2-PABPN110063.014Macaca_mulatta
ENSSFOG00015015833pabpn1l8153.514ENSMMUG00000048382-6456.771Macaca_mulatta
ENSSFOG00015015833pabpn1l8763.918ENSMNEG00000045065BCL2L2-PABPN17959.434Macaca_nemestrina
ENSSFOG00015015833pabpn1l7157.233ENSMNEG00000035750-9960.993Macaca_nemestrina
ENSSFOG00015015833pabpn1l8066.667ENSMLEG00000043862BCL2L2-PABPN110060.112Mandrillus_leucophaeus
ENSSFOG00015015833pabpn1l7158.228ENSMLEG00000034623-9960.145Mandrillus_leucophaeus
ENSSFOG00015015833pabpn1l8466.120ENSMAMG00000007979pabpn16565.027Mastacembelus_armatus
ENSSFOG00015015833pabpn1l8466.304ENSMZEG00005011904pabpn16464.481Maylandia_zebra
ENSSFOG00015015833pabpn1l8863.131ENSMAUG00000007383Gm205216662.755Mesocricetus_auratus
ENSSFOG00015015833pabpn1l8763.918ENSMICG00000010002BCL2L2-PABPN17959.434Microcebus_murinus
ENSSFOG00015015833pabpn1l8863.819ENSMOCG00000018557Gm205219070.946Microtus_ochrogaster
ENSSFOG00015015833pabpn1l8466.120ENSMMOG00000005405pabpn16173.944Mola_mola
ENSSFOG00015015833pabpn1l8763.959ENSMODG00000004535-6463.265Monodelphis_domestica
ENSSFOG00015015833pabpn1l8466.120ENSMALG00000019612pabpn16465.027Monopterus_albus
ENSSFOG00015015833pabpn1l8664.921MGP_CAROLIEiJ_G0019277Pabpn110059.551Mus_caroli
ENSSFOG00015015833pabpn1l8066.102MGP_CAROLIEiJ_G0019276Gm205215761.376Mus_caroli
ENSSFOG00015015833pabpn1l8066.667ENSMUSG00000092232Gm205215761.905Mus_musculus
ENSSFOG00015015833pabpn1l8863.819ENSMUSG00000022194Pabpn19963.473Mus_musculus
ENSSFOG00015015833pabpn1l8863.819MGP_PahariEiJ_G0030295Pabpn110073.810Mus_pahari
ENSSFOG00015015833pabpn1l8066.667MGP_PahariEiJ_G0030294Gm205215761.905Mus_pahari
ENSSFOG00015015833pabpn1l8863.819MGP_SPRETEiJ_G0020166Pabpn110060.112Mus_spretus
ENSSFOG00015015833pabpn1l8066.667MGP_SPRETEiJ_G0020165Gm205215761.905Mus_spretus
ENSSFOG00015015833pabpn1l7064.516ENSMPUG00000006775-9963.473Mustela_putorius_furo
ENSSFOG00015015833pabpn1l8664.921ENSMLUG00000028677-7361.616Myotis_lucifugus
ENSSFOG00015015833pabpn1l8065.537ENSMLUG00000003800-10061.376Myotis_lucifugus
ENSSFOG00015015833pabpn1l8367.403ENSMLUG00000012452-6164.171Myotis_lucifugus
ENSSFOG00015015833pabpn1l8066.667ENSNGAG00000019529Gm205215761.905Nannospalax_galili
ENSSFOG00015015833pabpn1l8466.304ENSNBRG00000023955pabpn17371.875Neolamprologus_brichardi
ENSSFOG00015015833pabpn1l8161.714ENSNLEG00000030598-6960.109Nomascus_leucogenys
ENSSFOG00015015833pabpn1l6252.593ENSNLEG00000035292-9552.593Nomascus_leucogenys
ENSSFOG00015015833pabpn1l8764.615ENSNLEG00000015007-7062.245Nomascus_leucogenys
ENSSFOG00015015833pabpn1l8863.636ENSODEG00000002083BCL2L2-PABPN16860.577Octodon_degus
ENSSFOG00015015833pabpn1l7360.123ENSODEG00000011555-8759.509Octodon_degus
ENSSFOG00015015833pabpn1l8861.658ENSODEG00000003739-6661.257Octodon_degus
ENSSFOG00015015833pabpn1l8466.304ENSONIG00000008112pabpn16464.481Oreochromis_niloticus
ENSSFOG00015015833pabpn1l6368.310ENSOANG00000009218-10064.384Ornithorhynchus_anatinus
ENSSFOG00015015833pabpn1l8764.433ENSOCUG00000016174PABPN17958.605Oryctolagus_cuniculus
ENSSFOG00015015833pabpn1l8466.120ENSORLG00000027900pabpn16073.944Oryzias_latipes
ENSSFOG00015015833pabpn1l7768.862ENSORLG00015000018pabpn16173.944Oryzias_latipes_hsok
ENSSFOG00015015833pabpn1l8466.120ENSOMEG00000016618pabpn16465.027Oryzias_melastigma
ENSSFOG00015015833pabpn1l8763.918ENSOGAG00000008710PABPN16860.096Otolemur_garnettii
ENSSFOG00015015833pabpn1l8066.667ENSOARG00000019336BCL2L2-PABPN15261.905Ovis_aries
ENSSFOG00015015833pabpn1l8066.667ENSPPAG00000028984BCL2L2-PABPN19963.473Pan_paniscus
ENSSFOG00015015833pabpn1l7155.484ENSPPAG00000039421-10052.841Pan_paniscus
ENSSFOG00015015833pabpn1l8763.918ENSPPRG00000010567PABPN16860.096Panthera_pardus
ENSSFOG00015015833pabpn1l7262.577ENSPTIG00000001063BCL2L2-PABPN110060.112Panthera_tigris_altaica
ENSSFOG00015015833pabpn1l8763.918ENSPTRG00000006167BCL2L27959.434Pan_troglodytes
ENSSFOG00015015833pabpn1l8258.333ENSPTRG00000047273-7155.263Pan_troglodytes
ENSSFOG00015015833pabpn1l8457.436ENSPANG00000023326-9960.284Papio_anubis
ENSSFOG00015015833pabpn1l8763.918ENSPANG00000021100BCL2L2-PABPN17959.434Papio_anubis
ENSSFOG00015015833pabpn1l8566.486ENSPKIG00000008144-6565.405Paramormyrops_kingsleyae
ENSSFOG00015015833pabpn1l6775.000ENSPKIG00000018052pabpn18064.706Paramormyrops_kingsleyae
ENSSFOG00015015833pabpn1l7789.697ENSPKIG00000008340pabpn1l9483.158Paramormyrops_kingsleyae
ENSSFOG00015015833pabpn1l5270.270ENSPSIG00000011959-7172.449Pelodiscus_sinensis
ENSSFOG00015015833pabpn1l8466.120ENSPMGG00000022027pabpn16765.027Periophthalmus_magnuspinnatus
ENSSFOG00015015833pabpn1l8863.131ENSPEMG00000008332Gm205219666.667Peromyscus_maniculatus_bairdii
ENSSFOG00015015833pabpn1l6870.748ENSPMAG00000006212pabpn16469.737Petromyzon_marinus
ENSSFOG00015015833pabpn1l8763.959ENSPCIG00000027751-6463.265Phascolarctos_cinereus
ENSSFOG00015015833pabpn1l7768.675ENSPFOG00000010351pabpn16868.293Poecilia_formosa
ENSSFOG00015015833pabpn1l8358.416ENSPLAG00000022696pabpn15073.944Poecilia_latipinna
ENSSFOG00015015833pabpn1l7768.675ENSPMEG00000020856pabpn16868.293Poecilia_mexicana
ENSSFOG00015015833pabpn1l8358.416ENSPREG00000011278pabpn16173.944Poecilia_reticulata
ENSSFOG00015015833pabpn1l8466.310ENSPPYG00000005663PABPN17062.944Pongo_abelii
ENSSFOG00015015833pabpn1l8356.757ENSPCAG00000005902PABPN16753.807Procavia_capensis
ENSSFOG00015015833pabpn1l8763.918ENSPCOG00000028047BCL2L2-PABPN17959.434Propithecus_coquereli
ENSSFOG00015015833pabpn1l8763.265ENSPVAG00000005270PABPN16363.542Pteropus_vampyrus
ENSSFOG00015015833pabpn1l7868.235ENSPNYG00000013182pabpn16173.944Pundamilia_nyererei
ENSSFOG00015015833pabpn1l8466.667ENSPNAG00000023526pabpn16174.648Pygocentrus_nattereri
ENSSFOG00015015833pabpn1l8481.967ENSPNAG00000021666pabpn1l8981.967Pygocentrus_nattereri
ENSSFOG00015015833pabpn1l8863.636ENSRNOG00000042195Pabpn16960.577Rattus_norvegicus
ENSSFOG00015015833pabpn1l8066.667ENSRBIG00000040762BCL2L2-PABPN15565.537Rhinopithecus_bieti
ENSSFOG00015015833pabpn1l8260.556ENSRBIG00000042811-8153.589Rhinopithecus_bieti
ENSSFOG00015015833pabpn1l9058.883ENSRBIG00000039547-7755.024Rhinopithecus_bieti
ENSSFOG00015015833pabpn1l8066.667ENSRROG00000045535BCL2L2-PABPN110060.112Rhinopithecus_roxellana
ENSSFOG00015015833pabpn1l8455.851ENSRROG00000036409-5853.684Rhinopithecus_roxellana
ENSSFOG00015015833pabpn1l9058.883ENSRROG00000040409-7755.024Rhinopithecus_roxellana
ENSSFOG00015015833pabpn1l8062.105ENSSBOG00000026930BCL2L2-PABPN19963.473Saimiri_boliviensis_boliviensis
ENSSFOG00015015833pabpn1l8457.754ENSSHAG00000007707-7955.376Sarcophilus_harrisii
ENSSFOG00015015833pabpn1l8762.626ENSSHAG00000014841-8961.538Sarcophilus_harrisii
ENSSFOG00015015833pabpn1l8466.120ENSSMAG00000020157pabpn16173.944Scophthalmus_maximus
ENSSFOG00015015833pabpn1l8466.120ENSSDUG00000020582pabpn16465.027Seriola_dumerili
ENSSFOG00015015833pabpn1l7768.862ENSSLDG00000007118pabpn16173.944Seriola_lalandi_dorsalis
ENSSFOG00015015833pabpn1l6766.892ENSSPUG00000018308-9364.458Sphenodon_punctatus
ENSSFOG00015015833pabpn1l8465.946ENSSPAG00000021658pabpn18064.171Stegastes_partitus
ENSSFOG00015015833pabpn1l8763.918ENSSSCG00000002023PABPN16860.096Sus_scrofa
ENSSFOG00015015833pabpn1l9352.000ENSSSCG00000034805-6757.669Sus_scrofa
ENSSFOG00015015833pabpn1l8466.120ENSTRUG00000023664pabpn16173.944Takifugu_rubripes
ENSSFOG00015015833pabpn1l7868.047ENSTNIG00000005369pabpn16673.944Tetraodon_nigroviridis
ENSSFOG00015015833pabpn1l8763.918ENSUAMG00000024460PABPN16860.096Ursus_americanus
ENSSFOG00015015833pabpn1l8066.667ENSUMAG00000014288BCL2L2-PABPN15761.905Ursus_maritimus
ENSSFOG00015015833pabpn1l8264.865ENSVVUG00000019912BCL2L2-PABPN17363.243Vulpes_vulpes
ENSSFOG00015015833pabpn1l6872.973ENSXETG00000014597pabpn16563.351Xenopus_tropicalis
ENSSFOG00015015833pabpn1l6774.306ENSXMAG00000006196pabpn16173.944Xiphophorus_maculatus

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