EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015016107 (Gene tree)
Gene ID: 108935641
Gene Symbol: ddx39b
Alias: bat1|zgc:63773
Full Name: spliceosome RNA helicase DDX39B
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 8864 bases
Position: chrKV411104.1:911054-919917
Accession: 108935641
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015025054	ResIII	PF04851.15	1.7e-07	1	1
ENSSFOP00015025105	ResIII	PF04851.15	2e-07	1	1
ENSSFOP00015025068	ResIII	PF04851.15	2.2e-07	1	1
ENSSFOP00015025054	DEAD	PF00270.29	2.3e-37	1	1
ENSSFOP00015025068	DEAD	PF00270.29	3.2e-37	1	1
ENSSFOP00015025105	DEAD	PF00270.29	2.1e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015025328	-	1360	XM_018754401	ENSSFOP00015025054	437 (aa)	XP_018609917	A0A1W5A231
ENSSFOT00015025380	-	1296	-	ENSSFOP00015025105	431 (aa)	-	-
ENSSFOT00015025342	-	1555	-	ENSSFOP00015025068	514 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015016107's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03013	RNA transport	KEGG
sfm03015	mRNA surveillance pathway	KEGG
sfm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015016107's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015016107	ddx39b	84	31.926	ENSSFOG00015020543	ddx19	79	32.011
ENSSFOG00015016107	ddx39b	87	36.842	ENSSFOG00015023211	ddx6	77	37.135
ENSSFOG00015016107	ddx39b	100	83.599	ENSSFOG00015007928	ddx39a	100	86.728
ENSSFOG00015016107	ddx39b	89	35.659	ENSSFOG00015022017	eif4a3	90	37.838
ENSSFOG00015016107	ddx39b	85	30.829	ENSSFOG00015000404	ddx41	62	30.749
ENSSFOG00015016107	ddx39b	94	35.885	ENSSFOG00015000931	-	90	38.649
ENSSFOG00015016107	ddx39b	89	35.190	ENSSFOG00015013858	eif4a2	94	37.566
ENSSFOG00015016107	ddx39b	85	31.759	ENSSFOG00015021150	ddx49	79	32.021
ENSSFOG00015016107	ddx39b	87	33.077	ENSSFOG00015008354	ddx20	50	33.673
ENSSFOG00015016107	ddx39b	73	30.982	ENSSFOG00015003802	ddx5	54	30.659
ENSSFOG00015016107	ddx39b	79	30.328	ENSSFOG00015007587	-	53	30.328
ENSSFOG00015016107	ddx39b	85	32.808	ENSSFOG00015002951	-	51	32.808
ENSSFOG00015016107	ddx39b	91	91.688	ENSSFOG00015005701	DDX39A	100	86.728
ENSSFOG00015016107	ddx39b	87	36.579	ENSSFOG00015021404	ddx61	76	36.579
ENSSFOG00015016107	ddx39b	81	30.411	ENSSFOG00015004961	DDX5	62	30.175
ENSSFOG00015016107	ddx39b	89	35.142	ENSSFOG00015022690	eif4a1b	94	36.757
ENSSFOG00015016107	ddx39b	87	30.311	ENSSFOG00015012193	ddx43	58	30.607
ENSSFOG00015016107	ddx39b	80	30.189	ENSSFOG00015022312	ddx3xa	52	30.081
ENSSFOG00015016107	ddx39b	89	35.659	ENSSFOG00015004896	-	91	37.534
ENSSFOG00015016107	ddx39b	79	34.294	ENSSFOG00015013392	ddx47	73	34.294
ENSSFOG00015016107	ddx39b	90	37.374	ENSSFOG00015007526	EIF4A2	93	37.371

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015016107	ddx39b	100	91.762	ENSG00000198563	DDX39B	95	96.629	Homo_sapiens
ENSSFOG00015016107	ddx39b	100	91.533	ENSAMEG00000009508	DDX39B	99	90.847	Ailuropoda_melanoleuca
ENSSFOG00015016107	ddx39b	99	93.056	ENSACIG00000004534	ddx39b	99	93.318	Amphilophus_citrinellus
ENSSFOG00015016107	ddx39b	100	94.050	ENSATEG00000012366	ddx39b	100	93.135	Anabas_testudineus
ENSSFOG00015016107	ddx39b	100	91.096	ENSACAG00000012240	DDX39B	100	90.639	Anolis_carolinensis
ENSSFOG00015016107	ddx39b	100	91.762	ENSANAG00000030372	DDX39B	100	91.076	Aotus_nancymaae
ENSSFOG00015016107	ddx39b	99	91.972	ENSACLG00000018759	ddx39b	99	92.396	Astatotilapia_calliptera
ENSSFOG00015016107	ddx39b	100	96.110	ENSAMXG00000017837	ddx39b	100	96.110	Astyanax_mexicanus
ENSSFOG00015016107	ddx39b	100	91.762	ENSBTAG00000014490	DDX39B	100	91.076	Bos_taurus
ENSSFOG00015016107	ddx39b	100	91.762	ENSCJAG00000003152	DDX39B	100	91.076	Callithrix_jacchus
ENSSFOG00015016107	ddx39b	100	91.762	ENSCAFG00000000509	DDX39B	100	95.484	Canis_familiaris
ENSSFOG00015016107	ddx39b	100	91.762	ENSCAFG00020020530	DDX39B	100	91.076	Canis_lupus_dingo
ENSSFOG00015016107	ddx39b	100	91.762	ENSCHIG00000004579	DDX39B	100	91.076	Capra_hircus
ENSSFOG00015016107	ddx39b	100	79.176	ENSTSYG00000029741	-	88	82.073	Carlito_syrichta
ENSSFOG00015016107	ddx39b	100	91.762	ENSTSYG00000010226	-	100	91.076	Carlito_syrichta
ENSSFOG00015016107	ddx39b	100	91.533	ENSCAPG00000010066	DDX39B	100	90.847	Cavia_aperea
ENSSFOG00015016107	ddx39b	100	91.533	ENSCPOG00000002335	DDX39B	100	90.847	Cavia_porcellus
ENSSFOG00015016107	ddx39b	100	91.762	ENSCCAG00000027897	DDX39B	100	91.076	Cebus_capucinus
ENSSFOG00015016107	ddx39b	99	82.488	ENSCATG00000043709	DDX39B	99	82.028	Cercocebus_atys
ENSSFOG00015016107	ddx39b	100	91.533	ENSCLAG00000014555	DDX39B	100	90.847	Chinchilla_lanigera
ENSSFOG00015016107	ddx39b	99	91.475	ENSCSAG00000008517	DDX39B	100	91.014	Chlorocebus_sabaeus
ENSSFOG00015016107	ddx39b	63	95.604	ENSCPBG00000014671	-	100	95.604	Chrysemys_picta_bellii
ENSSFOG00015016107	ddx39b	100	91.762	ENSCANG00000041217	DDX39B	100	91.076	Colobus_angolensis_palliatus
ENSSFOG00015016107	ddx39b	82	80.447	ENSCGRG00001021916	-	89	80.447	Cricetulus_griseus_chok1gshd
ENSSFOG00015016107	ddx39b	58	87.795	ENSCGRG00001017315	-	95	84.186	Cricetulus_griseus_chok1gshd
ENSSFOG00015016107	ddx39b	58	87.795	ENSCGRG00000012479	-	76	86.614	Cricetulus_griseus_crigri
ENSSFOG00015016107	ddx39b	100	94.279	ENSDARG00000036069	ddx39b	100	94.279	Danio_rerio
ENSSFOG00015016107	ddx39b	100	91.762	ENSDNOG00000010215	DDX39B	100	91.076	Dasypus_novemcinctus
ENSSFOG00015016107	ddx39b	88	91.384	ENSDORG00000004985	Ddx39b	100	90.601	Dipodomys_ordii
ENSSFOG00015016107	ddx39b	88	79.373	ENSETEG00000009649	DDX39B	87	78.851	Echinops_telfairi
ENSSFOG00015016107	ddx39b	100	91.762	ENSEASG00005017156	DDX39B	100	91.076	Equus_asinus_asinus
ENSSFOG00015016107	ddx39b	100	91.762	ENSECAG00000007750	DDX39B	100	91.076	Equus_caballus
ENSSFOG00015016107	ddx39b	100	93.593	ENSELUG00000017904	ddx39b	100	92.449	Esox_lucius
ENSSFOG00015016107	ddx39b	100	91.533	ENSFCAG00000004497	DDX39B	100	90.847	Felis_catus
ENSSFOG00015016107	ddx39b	100	91.533	ENSFDAG00000011074	DDX39B	100	90.847	Fukomys_damarensis
ENSSFOG00015016107	ddx39b	73	95.570	ENSGAGG00000001300	-	80	95.570	Gopherus_agassizii
ENSSFOG00015016107	ddx39b	100	91.762	ENSGGOG00000005989	DDX39B	100	91.076	Gorilla_gorilla
ENSSFOG00015016107	ddx39b	100	91.076	ENSHGLG00000019248	DDX39B	100	90.847	Heterocephalus_glaber_female
ENSSFOG00015016107	ddx39b	100	91.076	ENSHGLG00100011850	DDX39B	100	90.847	Heterocephalus_glaber_male
ENSSFOG00015016107	ddx39b	100	95.652	ENSIPUG00000015733	DDX39B	94	95.652	Ictalurus_punctatus
ENSSFOG00015016107	ddx39b	100	91.304	ENSSTOG00000012838	DDX39B	100	90.618	Ictidomys_tridecemlineatus
ENSSFOG00015016107	ddx39b	100	91.076	ENSJJAG00000005660	-	100	90.389	Jaculus_jaculus
ENSSFOG00015016107	ddx39b	64	80.783	ENSLBEG00000017177	-	81	80.783	Labrus_bergylta
ENSSFOG00015016107	ddx39b	99	77.778	ENSLBEG00000012254	ddx39b	99	77.546	Labrus_bergylta
ENSSFOG00015016107	ddx39b	100	83.521	ENSLACG00000002110	DDX39B	100	83.070	Latimeria_chalumnae
ENSSFOG00015016107	ddx39b	100	91.533	ENSLAFG00000014202	DDX39B	100	90.847	Loxodonta_africana
ENSSFOG00015016107	ddx39b	100	91.762	ENSMFAG00000034233	DDX39B	100	91.076	Macaca_fascicularis
ENSSFOG00015016107	ddx39b	100	91.762	ENSMMUG00000008839	DDX39B	100	91.076	Macaca_mulatta
ENSSFOG00015016107	ddx39b	100	91.762	ENSMNEG00000041059	DDX39B	100	91.076	Macaca_nemestrina
ENSSFOG00015016107	ddx39b	100	91.762	ENSMLEG00000043791	DDX39B	100	91.076	Mandrillus_leucophaeus
ENSSFOG00015016107	ddx39b	99	92.202	ENSMZEG00005017654	ddx39b	99	92.627	Maylandia_zebra
ENSSFOG00015016107	ddx39b	100	91.762	ENSMAUG00000008059	Ddx39b	100	91.076	Mesocricetus_auratus
ENSSFOG00015016107	ddx39b	100	91.762	ENSMICG00000017349	DDX39B	100	91.076	Microcebus_murinus
ENSSFOG00015016107	ddx39b	100	91.533	ENSMOCG00000011169	Ddx39b	100	90.847	Microtus_ochrogaster
ENSSFOG00015016107	ddx39b	88	91.429	ENSMODG00000015791	DDX39B	88	90.649	Monodelphis_domestica
ENSSFOG00015016107	ddx39b	100	91.533	ENSMUSG00000019432	Ddx39b	100	94.595	Mus_musculus
ENSSFOG00015016107	ddx39b	100	91.533	MGP_PahariEiJ_G0020513	Ddx39b	100	94.595	Mus_pahari
ENSSFOG00015016107	ddx39b	100	91.533	MGP_SPRETEiJ_G0022424	Ddx39b	100	91.076	Mus_spretus
ENSSFOG00015016107	ddx39b	100	91.533	ENSMPUG00000011407	DDX39B	100	90.847	Mustela_putorius_furo
ENSSFOG00015016107	ddx39b	72	95.498	ENSMLUG00000001681	DDX39B	100	95.498	Myotis_lucifugus
ENSSFOG00015016107	ddx39b	100	91.762	ENSNGAG00000022948	Ddx39b	100	91.076	Nannospalax_galili
ENSSFOG00015016107	ddx39b	100	71.462	ENSNLEG00000006094	DDX39B	100	72.311	Nomascus_leucogenys
ENSSFOG00015016107	ddx39b	86	97.297	ENSMEUG00000008264	DDX39B	86	97.297	Notamacropus_eugenii
ENSSFOG00015016107	ddx39b	100	91.533	ENSOPRG00000011923	DDX39B	100	90.847	Ochotona_princeps
ENSSFOG00015016107	ddx39b	100	91.304	ENSODEG00000018083	DDX39B	100	90.618	Octodon_degus
ENSSFOG00015016107	ddx39b	100	92.449	ENSONIG00000004740	ddx39b	100	92.449	Oreochromis_niloticus
ENSSFOG00015016107	ddx39b	56	86.992	ENSOANG00000008361	DDX39B	95	85.772	Ornithorhynchus_anatinus
ENSSFOG00015016107	ddx39b	100	88.274	ENSOCUG00000024126	DDX39B	100	87.611	Oryctolagus_cuniculus
ENSSFOG00015016107	ddx39b	100	90.411	ENSOGAG00000028850	-	100	89.726	Otolemur_garnettii
ENSSFOG00015016107	ddx39b	82	87.968	ENSOGAG00000009067	-	100	94.444	Otolemur_garnettii
ENSSFOG00015016107	ddx39b	100	91.762	ENSOARG00000008787	DDX39B	98	91.076	Ovis_aries
ENSSFOG00015016107	ddx39b	100	91.762	ENSPPAG00000043072	DDX39B	100	91.076	Pan_paniscus
ENSSFOG00015016107	ddx39b	100	91.533	ENSPPRG00000001913	DDX39B	100	90.847	Panthera_pardus
ENSSFOG00015016107	ddx39b	100	90.847	ENSPTIG00000017669	DDX39B	100	90.389	Panthera_tigris_altaica
ENSSFOG00015016107	ddx39b	100	91.762	ENSPTRG00000032509	DDX39B	100	91.076	Pan_troglodytes
ENSSFOG00015016107	ddx39b	100	91.762	ENSPANG00000018609	DDX39B	100	91.076	Papio_anubis
ENSSFOG00015016107	ddx39b	100	97.941	ENSPKIG00000011324	ddx39b	100	97.941	Paramormyrops_kingsleyae
ENSSFOG00015016107	ddx39b	100	91.304	ENSPEMG00000016905	Ddx39b	100	90.847	Peromyscus_maniculatus_bairdii
ENSSFOG00015016107	ddx39b	100	91.762	ENSPCIG00000017572	DDX39B	100	91.076	Phascolarctos_cinereus
ENSSFOG00015016107	ddx39b	100	91.762	ENSPPYG00000016433	DDX39B	100	91.076	Pongo_abelii
ENSSFOG00015016107	ddx39b	66	95.070	ENSPCAG00000003484	DDX39B	100	95.070	Procavia_capensis
ENSSFOG00015016107	ddx39b	100	91.762	ENSPCOG00000018656	DDX39B	100	91.076	Propithecus_coquereli
ENSSFOG00015016107	ddx39b	100	91.762	ENSPVAG00000004653	DDX39B	100	91.076	Pteropus_vampyrus
ENSSFOG00015016107	ddx39b	98	82.984	ENSPNYG00000010382	ddx39b	99	83.180	Pundamilia_nyererei
ENSSFOG00015016107	ddx39b	100	96.110	ENSPNAG00000026926	ddx39b	100	96.110	Pygocentrus_nattereri
ENSSFOG00015016107	ddx39b	100	91.533	ENSRNOG00000000841	Ddx39b	100	91.076	Rattus_norvegicus
ENSSFOG00015016107	ddx39b	100	81.693	ENSRBIG00000031309	DDX39B	100	81.007	Rhinopithecus_bieti
ENSSFOG00015016107	ddx39b	100	91.762	ENSRROG00000039517	DDX39B	100	91.076	Rhinopithecus_roxellana
ENSSFOG00015016107	ddx39b	100	81.693	ENSSBOG00000035513	-	100	81.007	Saimiri_boliviensis_boliviensis
ENSSFOG00015016107	ddx39b	100	91.762	ENSSHAG00000003209	DDX39B	100	91.076	Sarcophilus_harrisii
ENSSFOG00015016107	ddx39b	100	92.677	ENSSDUG00000011557	ddx39b	100	92.906	Seriola_dumerili
ENSSFOG00015016107	ddx39b	100	92.906	ENSSLDG00000015763	ddx39b	100	93.135	Seriola_lalandi_dorsalis
ENSSFOG00015016107	ddx39b	88	79.896	ENSSARG00000005245	DDX39B	100	79.112	Sorex_araneus
ENSSFOG00015016107	ddx39b	100	91.096	ENSSPUG00000012805	DDX39B	100	90.618	Sphenodon_punctatus
ENSSFOG00015016107	ddx39b	100	91.762	ENSSSCG00000001400	DDX39B	100	95.954	Sus_scrofa
ENSSFOG00015016107	ddx39b	100	69.336	ENSTBEG00000003721	DDX39B	100	68.650	Tupaia_belangeri
ENSSFOG00015016107	ddx39b	100	84.389	ENSTTRG00000014074	DDX39B	100	84.389	Tursiops_truncatus
ENSSFOG00015016107	ddx39b	100	79.271	ENSUAMG00000027335	DDX39B	100	78.588	Ursus_americanus
ENSSFOG00015016107	ddx39b	100	82.838	ENSUMAG00000015124	DDX39B	100	82.151	Ursus_maritimus
ENSSFOG00015016107	ddx39b	62	81.967	ENSVPAG00000009167	-	74	79.508	Vicugna_pacos
ENSSFOG00015016107	ddx39b	100	91.762	ENSVVUG00000019518	DDX39B	99	91.076	Vulpes_vulpes
ENSSFOG00015016107	ddx39b	100	80.866	ENSXETG00000002498	ddx39b	99	80.866	Xenopus_tropicalis