EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015016289 (Gene tree)
Gene ID: 108942710
Gene Symbol: -
Alias: -
Full Name: exosome complex component CSL4-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 7644 bases
Position: chrKV411250.1:2855734-2863377
Accession: 108942710
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015025333	EXOSC1	PF10447.9	6.1e-16	1	1
ENSSFOP00015025326	EXOSC1	PF10447.9	1.9e-13	1	1
ENSSFOP00015025333	ECR1_N	PF14382.6	2.1e-12	1	1
ENSSFOP00015025326	ECR1_N	PF14382.6	6.8e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015025608	-	516	-	ENSSFOP00015025326	171 (aa)	-	-
ENSSFOT00015025614	-	982	XM_018766180	ENSSFOP00015025333	194 (aa)	XP_018621696	A0A1W5B8Z7

Gene Model

Click here to download ENSSFOG00015016289's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015016289's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015016289	-	100	88.660	ENSSFOG00015009069	exosc1	100	88.660

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015016289	-	98	78.421	ENSG00000171311	EXOSC1	98	77.844	Homo_sapiens
ENSSFOG00015016289	-	100	90.206	ENSAPOG00000007822	exosc1	100	90.206	Acanthochromis_polyacanthus
ENSSFOG00015016289	-	98	78.421	ENSAMEG00000000129	EXOSC1	97	78.421	Ailuropoda_melanoleuca
ENSSFOG00015016289	-	99	88.083	ENSACIG00000018956	exosc1	95	88.083	Amphilophus_citrinellus
ENSSFOG00015016289	-	100	90.206	ENSAOCG00000010699	exosc1	100	90.206	Amphiprion_ocellaris
ENSSFOG00015016289	-	92	80.899	ENSAPEG00000012690	exosc1	96	80.899	Amphiprion_percula
ENSSFOG00015016289	-	100	89.175	ENSATEG00000018683	exosc1	100	89.175	Anabas_testudineus
ENSSFOG00015016289	-	96	76.471	ENSACAG00000002101	EXOSC1	96	76.471	Anolis_carolinensis
ENSSFOG00015016289	-	98	77.895	ENSANAG00000034669	EXOSC1	98	77.844	Aotus_nancymaae
ENSSFOG00015016289	-	100	90.206	ENSACLG00000021243	exosc1	100	90.206	Astatotilapia_calliptera
ENSSFOG00015016289	-	100	90.722	ENSAMXG00000011116	exosc1	100	90.722	Astyanax_mexicanus
ENSSFOG00015016289	-	98	78.421	ENSBTAG00000012699	EXOSC1	97	78.421	Bos_taurus
ENSSFOG00015016289	-	94	34.031	WBGene00012966	exos-1	92	34.031	Caenorhabditis_elegans
ENSSFOG00015016289	-	98	77.368	ENSCJAG00000016586	EXOSC1	98	77.246	Callithrix_jacchus
ENSSFOG00015016289	-	98	77.895	ENSCAFG00000009068	EXOSC1	92	77.895	Canis_familiaris
ENSSFOG00015016289	-	98	77.895	ENSCAFG00020006002	EXOSC1	92	77.895	Canis_lupus_dingo
ENSSFOG00015016289	-	98	78.421	ENSCHIG00000015253	EXOSC1	97	78.421	Capra_hircus
ENSSFOG00015016289	-	98	77.246	ENSTSYG00000000760	EXOSC1	98	77.246	Carlito_syrichta
ENSSFOG00015016289	-	98	77.895	ENSCPOG00000001173	EXOSC1	97	77.895	Cavia_porcellus
ENSSFOG00015016289	-	98	45.509	ENSCCAG00000023986	EXOSC1	97	45.509	Cebus_capucinus
ENSSFOG00015016289	-	98	78.421	ENSCATG00000034114	EXOSC1	98	77.844	Cercocebus_atys
ENSSFOG00015016289	-	98	77.895	ENSCLAG00000002463	EXOSC1	97	77.895	Chinchilla_lanigera
ENSSFOG00015016289	-	98	78.421	ENSCSAG00000005870	EXOSC1	97	78.421	Chlorocebus_sabaeus
ENSSFOG00015016289	-	94	66.667	ENSCHOG00000006477	EXOSC1	98	66.667	Choloepus_hoffmanni
ENSSFOG00015016289	-	55	66.355	ENSCPBG00000011949	EXOSC1	88	66.355	Chrysemys_picta_bellii
ENSSFOG00015016289	-	96	53.191	ENSCING00000022734	-	90	53.191	Ciona_intestinalis
ENSSFOG00015016289	-	96	56.915	ENSCSAVG00000010865	-	96	56.915	Ciona_savignyi
ENSSFOG00015016289	-	98	78.421	ENSCANG00000034159	EXOSC1	98	77.844	Colobus_angolensis_palliatus
ENSSFOG00015016289	-	98	76.842	ENSCGRG00001000335	Exosc1	97	76.842	Cricetulus_griseus_chok1gshd
ENSSFOG00015016289	-	98	76.842	ENSCGRG00000011602	Exosc1	97	76.842	Cricetulus_griseus_crigri
ENSSFOG00015016289	-	98	85.714	ENSCSEG00000007895	exosc1	95	85.714	Cynoglossus_semilaevis
ENSSFOG00015016289	-	100	82.474	ENSCVAG00000016748	exosc1	100	82.474	Cyprinodon_variegatus
ENSSFOG00015016289	-	100	90.722	ENSDARG00000059841	exosc1	100	90.722	Danio_rerio
ENSSFOG00015016289	-	74	75.694	ENSDNOG00000007983	EXOSC1	97	75.694	Dasypus_novemcinctus
ENSSFOG00015016289	-	98	77.368	ENSDORG00000016528	Exosc1	97	77.368	Dipodomys_ordii
ENSSFOG00015016289	-	95	47.368	FBgn0032346	Csl4	92	47.368	Drosophila_melanogaster
ENSSFOG00015016289	-	98	76.316	ENSETEG00000002469	-	97	76.316	Echinops_telfairi
ENSSFOG00015016289	-	97	64.583	ENSEBUG00000008164	exosc1	96	64.583	Eptatretus_burgeri
ENSSFOG00015016289	-	98	70.526	ENSEASG00005008684	EXOSC1	98	70.270	Equus_asinus_asinus
ENSSFOG00015016289	-	59	57.391	ENSECAG00000010621	EXOSC1	69	57.391	Equus_caballus
ENSSFOG00015016289	-	98	78.421	ENSEEUG00000005647	EXOSC1	97	78.421	Erinaceus_europaeus
ENSSFOG00015016289	-	96	87.634	ENSELUG00000017369	exosc1	98	78.107	Esox_lucius
ENSSFOG00015016289	-	98	78.421	ENSFCAG00000040563	EXOSC1	98	77.844	Felis_catus
ENSSFOG00015016289	-	97	75.661	ENSFALG00000008450	EXOSC1	97	75.661	Ficedula_albicollis
ENSSFOG00015016289	-	98	78.421	ENSFDAG00000000846	EXOSC1	97	78.421	Fukomys_damarensis
ENSSFOG00015016289	-	100	81.959	ENSFHEG00000009154	exosc1	100	81.959	Fundulus_heteroclitus
ENSSFOG00015016289	-	100	87.629	ENSGMOG00000008993	exosc1	100	87.629	Gadus_morhua
ENSSFOG00015016289	-	98	74.850	ENSGALG00000039917	EXOSC1	99	80.690	Gallus_gallus
ENSSFOG00015016289	-	100	82.474	ENSGAFG00000010265	exosc1	95	82.474	Gambusia_affinis
ENSSFOG00015016289	-	100	85.052	ENSGACG00000018936	exosc1	100	85.052	Gasterosteus_aculeatus
ENSSFOG00015016289	-	98	74.211	ENSGAGG00000019192	EXOSC1	97	74.211	Gopherus_agassizii
ENSSFOG00015016289	-	98	77.844	ENSGGOG00000003099	EXOSC1	98	77.844	Gorilla_gorilla
ENSSFOG00015016289	-	100	90.206	ENSHBUG00000017857	exosc1	100	90.206	Haplochromis_burtoni
ENSSFOG00015016289	-	98	77.895	ENSHGLG00000016927	EXOSC1	97	77.895	Heterocephalus_glaber_female
ENSSFOG00015016289	-	98	77.895	ENSHGLG00100012208	EXOSC1	97	77.895	Heterocephalus_glaber_male
ENSSFOG00015016289	-	100	87.629	ENSHCOG00000019882	exosc1	100	87.629	Hippocampus_comes
ENSSFOG00015016289	-	100	89.691	ENSIPUG00000007685	exosc1	100	89.691	Ictalurus_punctatus
ENSSFOG00015016289	-	98	77.368	ENSSTOG00000006615	EXOSC1	97	77.368	Ictidomys_tridecemlineatus
ENSSFOG00015016289	-	61	63.559	ENSSTOG00000029860	-	90	63.559	Ictidomys_tridecemlineatus
ENSSFOG00015016289	-	98	77.895	ENSJJAG00000013311	Exosc1	97	77.895	Jaculus_jaculus
ENSSFOG00015016289	-	100	87.113	ENSKMAG00000001202	exosc1	82	87.113	Kryptolebias_marmoratus
ENSSFOG00015016289	-	100	88.660	ENSLBEG00000011448	exosc1	100	88.660	Labrus_bergylta
ENSSFOG00015016289	-	100	65.500	ENSLOCG00000003776	exosc1	100	65.500	Lepisosteus_oculatus
ENSSFOG00015016289	-	98	77.895	ENSLAFG00000015983	EXOSC1	97	77.895	Loxodonta_africana
ENSSFOG00015016289	-	98	78.421	ENSMFAG00000001493	EXOSC1	98	77.844	Macaca_fascicularis
ENSSFOG00015016289	-	98	78.421	ENSMMUG00000020028	EXOSC1	98	77.844	Macaca_mulatta
ENSSFOG00015016289	-	98	78.421	ENSMNEG00000029816	EXOSC1	98	77.844	Macaca_nemestrina
ENSSFOG00015016289	-	98	72.632	ENSMLEG00000027643	EXOSC1	97	72.632	Mandrillus_leucophaeus
ENSSFOG00015016289	-	100	90.722	ENSMAMG00000012200	exosc1	100	90.722	Mastacembelus_armatus
ENSSFOG00015016289	-	100	90.206	ENSMZEG00005007042	exosc1	100	90.206	Maylandia_zebra
ENSSFOG00015016289	-	98	77.246	ENSMAUG00000020462	-	98	77.246	Mesocricetus_auratus
ENSSFOG00015016289	-	98	77.895	ENSMICG00000007664	EXOSC1	98	77.844	Microcebus_murinus
ENSSFOG00015016289	-	97	72.487	ENSMOCG00000017124	-	96	72.487	Microtus_ochrogaster
ENSSFOG00015016289	-	98	76.842	ENSMOCG00000006004	-	97	76.842	Microtus_ochrogaster
ENSSFOG00015016289	-	94	68.852	ENSMMOG00000021403	exosc1	95	69.811	Mola_mola
ENSSFOG00015016289	-	98	78.534	ENSMODG00000004213	EXOSC1	97	78.534	Monodelphis_domestica
ENSSFOG00015016289	-	95	89.730	ENSMALG00000007061	exosc1	93	89.730	Monopterus_albus
ENSSFOG00015016289	-	98	76.316	MGP_CAROLIEiJ_G0022959	Exosc1	97	76.316	Mus_caroli
ENSSFOG00015016289	-	98	76.316	ENSMUSG00000034321	Exosc1	97	76.316	Mus_musculus
ENSSFOG00015016289	-	98	76.842	MGP_PahariEiJ_G0014449	Exosc1	97	76.842	Mus_pahari
ENSSFOG00015016289	-	98	76.316	MGP_SPRETEiJ_G0023880	Exosc1	97	76.316	Mus_spretus
ENSSFOG00015016289	-	98	78.421	ENSMPUG00000017044	EXOSC1	97	78.421	Mustela_putorius_furo
ENSSFOG00015016289	-	98	77.895	ENSMLUG00000009228	EXOSC1	97	77.895	Myotis_lucifugus
ENSSFOG00015016289	-	98	75.263	ENSNGAG00000022033	Exosc1	97	75.263	Nannospalax_galili
ENSSFOG00015016289	-	100	70.103	ENSNBRG00000024007	exosc1	99	70.103	Neolamprologus_brichardi
ENSSFOG00015016289	-	98	77.895	ENSNLEG00000013872	EXOSC1	98	77.246	Nomascus_leucogenys
ENSSFOG00015016289	-	57	70.270	ENSMEUG00000002246	EXOSC1	97	70.270	Notamacropus_eugenii
ENSSFOG00015016289	-	98	76.842	ENSOPRG00000005065	EXOSC1	97	76.842	Ochotona_princeps
ENSSFOG00015016289	-	98	78.421	ENSODEG00000016709	EXOSC1	97	78.421	Octodon_degus
ENSSFOG00015016289	-	100	89.691	ENSONIG00000017683	exosc1	99	89.691	Oreochromis_niloticus
ENSSFOG00015016289	-	67	88.596	ENSOANG00000006563	EXOSC1	98	85.366	Ornithorhynchus_anatinus
ENSSFOG00015016289	-	98	71.728	ENSOCUG00000026461	-	98	71.728	Oryctolagus_cuniculus
ENSSFOG00015016289	-	98	76.440	ENSOCUG00000011898	-	97	76.440	Oryctolagus_cuniculus
ENSSFOG00015016289	-	100	84.615	ENSORLG00000011595	exosc1	100	84.615	Oryzias_latipes
ENSSFOG00015016289	-	100	84.615	ENSORLG00020005831	exosc1	100	84.615	Oryzias_latipes_hni
ENSSFOG00015016289	-	100	84.103	ENSORLG00015004317	exosc1	100	84.103	Oryzias_latipes_hsok
ENSSFOG00015016289	-	100	71.649	ENSOMEG00000013907	exosc1	99	71.649	Oryzias_melastigma
ENSSFOG00015016289	-	98	77.895	ENSOGAG00000016259	EXOSC1	97	77.895	Otolemur_garnettii
ENSSFOG00015016289	-	98	77.895	ENSOARG00000010136	EXOSC1	97	77.895	Ovis_aries
ENSSFOG00015016289	-	98	72.396	ENSPPAG00000039842	EXOSC1	97	72.396	Pan_paniscus
ENSSFOG00015016289	-	98	78.421	ENSPPRG00000023366	EXOSC1	98	77.844	Panthera_pardus
ENSSFOG00015016289	-	98	78.421	ENSPTIG00000017701	EXOSC1	98	77.844	Panthera_tigris_altaica
ENSSFOG00015016289	-	98	78.421	ENSPTRG00000002808	EXOSC1	98	77.844	Pan_troglodytes
ENSSFOG00015016289	-	98	78.421	ENSPANG00000021324	EXOSC1	98	77.844	Papio_anubis
ENSSFOG00015016289	-	100	90.722	ENSPKIG00000016037	exosc1	100	90.722	Paramormyrops_kingsleyae
ENSSFOG00015016289	-	91	62.632	ENSPSIG00000013571	EXOSC1	98	76.033	Pelodiscus_sinensis
ENSSFOG00015016289	-	98	86.905	ENSPMGG00000014002	exosc1	99	86.905	Periophthalmus_magnuspinnatus
ENSSFOG00015016289	-	98	76.842	ENSPEMG00000010710	-	97	76.842	Peromyscus_maniculatus_bairdii
ENSSFOG00015016289	-	96	68.449	ENSPMAG00000000195	exosc1	95	68.449	Petromyzon_marinus
ENSSFOG00015016289	-	98	76.440	ENSPCIG00000002210	EXOSC1	97	76.440	Phascolarctos_cinereus
ENSSFOG00015016289	-	100	82.474	ENSPFOG00000006755	exosc1	95	82.474	Poecilia_formosa
ENSSFOG00015016289	-	100	82.474	ENSPLAG00000005880	exosc1	100	82.474	Poecilia_latipinna
ENSSFOG00015016289	-	100	82.474	ENSPMEG00000015598	exosc1	95	82.474	Poecilia_mexicana
ENSSFOG00015016289	-	98	79.762	ENSPREG00000000405	exosc1	93	79.762	Poecilia_reticulata
ENSSFOG00015016289	-	98	78.421	ENSPPYG00000002531	EXOSC1	97	78.421	Pongo_abelii
ENSSFOG00015016289	-	98	76.842	ENSPCAG00000009135	EXOSC1	97	76.842	Procavia_capensis
ENSSFOG00015016289	-	98	71.579	ENSPCOG00000027539	EXOSC1	97	71.579	Propithecus_coquereli
ENSSFOG00015016289	-	98	77.895	ENSPVAG00000003372	EXOSC1	97	77.895	Pteropus_vampyrus
ENSSFOG00015016289	-	100	90.206	ENSPNYG00000021745	exosc1	100	90.206	Pundamilia_nyererei
ENSSFOG00015016289	-	100	90.722	ENSPNAG00000001944	exosc1	100	90.722	Pygocentrus_nattereri
ENSSFOG00015016289	-	98	76.842	ENSRNOG00000048708	Exosc1	97	76.842	Rattus_norvegicus
ENSSFOG00015016289	-	98	78.421	ENSRBIG00000035618	EXOSC1	98	77.844	Rhinopithecus_bieti
ENSSFOG00015016289	-	98	78.421	ENSRROG00000032589	EXOSC1	98	77.844	Rhinopithecus_roxellana
ENSSFOG00015016289	-	56	50.000	YNL232W	CSL4	55	37.423	Saccharomyces_cerevisiae
ENSSFOG00015016289	-	98	77.895	ENSSBOG00000000359	EXOSC1	98	77.844	Saimiri_boliviensis_boliviensis
ENSSFOG00015016289	-	75	84.354	ENSSHAG00000018219	EXOSC1	100	84.354	Sarcophilus_harrisii
ENSSFOG00015016289	-	100	89.175	ENSSMAG00000003721	exosc1	100	89.175	Scophthalmus_maximus
ENSSFOG00015016289	-	100	88.660	ENSSDUG00000002993	exosc1	100	88.660	Seriola_dumerili
ENSSFOG00015016289	-	100	88.660	ENSSLDG00000025181	exosc1	100	88.660	Seriola_lalandi_dorsalis
ENSSFOG00015016289	-	98	67.708	ENSSARG00000000162	EXOSC1	98	67.708	Sorex_araneus
ENSSFOG00015016289	-	98	73.158	ENSSPUG00000012263	EXOSC1	97	73.158	Sphenodon_punctatus
ENSSFOG00015016289	-	100	80.928	ENSSPAG00000016792	exosc1	83	80.928	Stegastes_partitus
ENSSFOG00015016289	-	98	77.368	ENSSSCG00000010518	EXOSC1	89	77.368	Sus_scrofa
ENSSFOG00015016289	-	98	75.263	ENSTGUG00000009692	EXOSC1	98	75.263	Taeniopygia_guttata
ENSSFOG00015016289	-	98	78.421	ENSTRUG00000007706	exosc1	98	78.421	Takifugu_rubripes
ENSSFOG00015016289	-	98	78.238	ENSTNIG00000014079	exosc1	97	78.238	Tetraodon_nigroviridis
ENSSFOG00015016289	-	98	72.105	ENSTBEG00000006011	EXOSC1	97	72.105	Tupaia_belangeri
ENSSFOG00015016289	-	94	79.781	ENSTTRG00000009887	EXOSC1	99	79.781	Tursiops_truncatus
ENSSFOG00015016289	-	98	62.632	ENSUAMG00000010266	EXOSC1	97	62.632	Ursus_americanus
ENSSFOG00015016289	-	98	64.211	ENSUMAG00000022002	EXOSC1	97	64.211	Ursus_maritimus
ENSSFOG00015016289	-	98	77.895	ENSVVUG00000023192	EXOSC1	61	77.895	Vulpes_vulpes
ENSSFOG00015016289	-	99	74.093	ENSXETG00000003434	exosc1	99	74.093	Xenopus_tropicalis
ENSSFOG00015016289	-	71	85.950	ENSXCOG00000014499	exosc1	93	85.950	Xiphophorus_couchianus
ENSSFOG00015016289	-	98	80.357	ENSXMAG00000023382	exosc1	93	80.357	Xiphophorus_maculatus