EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015016794 (Gene tree)
Gene ID: 108924317
Gene Symbol: smarca5
Alias: SWI/SNF related|matrix associated|actin dependent regulator of chromatin A5|chunp6878|fb26d12|fb49g04|im:7146484|wu:fb26d12|wu:fb49g04|zgc:158434
Full Name: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 12801 bases
Position: chrKV410834.1:3696472-3709272
Accession: 108924317
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015026245	ResIII	PF04851.15	2.4e-11	1	1
ENSSFOP00015026282	ResIII	PF04851.15	2.4e-11	1	1
ENSSFOP00015026376	ResIII	PF04851.15	2.4e-11	1	1
ENSSFOP00015026320	ResIII	PF04851.15	2.6e-11	1	1
ENSSFOP00015026245	DEAD	PF00270.29	1.1e-06	1	1
ENSSFOP00015026282	DEAD	PF00270.29	1.1e-06	1	1
ENSSFOP00015026376	DEAD	PF00270.29	1.3e-06	1	1
ENSSFOP00015026320	DEAD	PF00270.29	1.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015026576	-	7637	-	ENSSFOP00015026282	969 (aa)	-	-
ENSSFOT00015026671	-	3108	-	ENSSFOP00015026376	1035 (aa)	-	-
ENSSFOT00015026539	-	7794	-	ENSSFOP00015026245	969 (aa)	-	-
ENSSFOT00015026614	-	6530	XM_018735622	ENSSFOP00015026320	1089 (aa)	XP_018591138	-

Gene Model

Click here to download ENSSFOG00015016794's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015016794's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015016794	smarca5	99	85.449	ENSSFOG00015009043	smarca1	97	84.802
ENSSFOG00015016794	smarca5	52	46.209	ENSSFOG00015017895	hells	74	37.645
ENSSFOG00015016794	smarca5	100	93.498	ENSSFOG00015013252	SMARCA5	98	91.733
ENSSFOG00015016794	smarca5	56	44.607	ENSSFOG00015003649	chd1l	63	44.465

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015016794	smarca5	100	83.814	ENSG00000102038	SMARCA1	95	82.154	Homo_sapiens
ENSSFOG00015016794	smarca5	100	93.814	ENSAPOG00000016035	smarca5	99	93.573	Acanthochromis_polyacanthus
ENSSFOG00015016794	smarca5	100	82.383	ENSAMEG00000015218	SMARCA1	95	80.509	Ailuropoda_melanoleuca
ENSSFOG00015016794	smarca5	93	93.230	ENSACIG00000016982	smarca5	99	93.296	Amphilophus_citrinellus
ENSSFOG00015016794	smarca5	100	93.814	ENSAOCG00000015578	smarca5	94	93.911	Amphiprion_ocellaris
ENSSFOG00015016794	smarca5	100	93.814	ENSAPEG00000011117	smarca5	99	94.208	Amphiprion_percula
ENSSFOG00015016794	smarca5	100	93.093	ENSATEG00000012894	smarca5	95	92.857	Anabas_testudineus
ENSSFOG00015016794	smarca5	100	85.155	ENSAPLG00000013149	SMARCA1	99	85.155	Anas_platyrhynchos
ENSSFOG00015016794	smarca5	100	85.052	ENSACAG00000011376	SMARCA1	94	84.725	Anolis_carolinensis
ENSSFOG00015016794	smarca5	100	78.969	ENSANAG00000023098	SMARCA1	95	77.468	Aotus_nancymaae
ENSSFOG00015016794	smarca5	100	93.299	ENSACLG00000025356	smarca5	97	91.317	Astatotilapia_calliptera
ENSSFOG00015016794	smarca5	100	94.943	ENSAMXG00000005709	smarca5	98	91.707	Astyanax_mexicanus
ENSSFOG00015016794	smarca5	96	84.640	ENSAMXG00000011227	smarca1	99	85.887	Astyanax_mexicanus
ENSSFOG00015016794	smarca5	100	83.505	ENSBTAG00000002292	SMARCA1	92	82.609	Bos_taurus
ENSSFOG00015016794	smarca5	98	64.410	WBGene00002169	isw-1	92	65.745	Caenorhabditis_elegans
ENSSFOG00015016794	smarca5	100	83.814	ENSCJAG00000002868	SMARCA1	95	82.154	Callithrix_jacchus
ENSSFOG00015016794	smarca5	100	74.367	ENSCAFG00000018673	SMARCA1	99	75.708	Canis_familiaris
ENSSFOG00015016794	smarca5	100	83.711	ENSCAFG00020001751	SMARCA1	95	81.665	Canis_lupus_dingo
ENSSFOG00015016794	smarca5	100	83.402	ENSCHIG00000009837	SMARCA1	93	82.359	Capra_hircus
ENSSFOG00015016794	smarca5	100	83.505	ENSTSYG00000004240	SMARCA1	96	83.229	Carlito_syrichta
ENSSFOG00015016794	smarca5	99	82.663	ENSCPOG00000013601	SMARCA1	95	81.162	Cavia_porcellus
ENSSFOG00015016794	smarca5	100	80.928	ENSCCAG00000030817	SMARCA1	95	79.362	Cebus_capucinus
ENSSFOG00015016794	smarca5	98	85.005	ENSCATG00000015921	SMARCA1	93	83.420	Cercocebus_atys
ENSSFOG00015016794	smarca5	100	82.784	ENSCLAG00000002171	SMARCA1	94	81.754	Chinchilla_lanigera
ENSSFOG00015016794	smarca5	100	83.814	ENSCSAG00000008460	SMARCA1	95	82.154	Chlorocebus_sabaeus
ENSSFOG00015016794	smarca5	100	85.052	ENSCPBG00000001146	SMARCA1	94	84.073	Chrysemys_picta_bellii
ENSSFOG00015016794	smarca5	99	74.564	ENSCING00000004110	swi/snf	97	74.592	Ciona_intestinalis
ENSSFOG00015016794	smarca5	99	74.435	ENSCSAVG00000004620	-	100	75.056	Ciona_savignyi
ENSSFOG00015016794	smarca5	100	83.918	ENSCANG00000007183	SMARCA1	95	82.253	Colobus_angolensis_palliatus
ENSSFOG00015016794	smarca5	100	82.680	ENSCGRG00001010776	Smarca1	96	80.413	Cricetulus_griseus_chok1gshd
ENSSFOG00015016794	smarca5	98	83.527	ENSCGRG00000015301	Smarca1	96	82.273	Cricetulus_griseus_crigri
ENSSFOG00015016794	smarca5	100	93.196	ENSCSEG00000000328	smarca5	96	92.308	Cynoglossus_semilaevis
ENSSFOG00015016794	smarca5	100	92.990	ENSCVAG00000008668	smarca5	99	93.388	Cyprinodon_variegatus
ENSSFOG00015016794	smarca5	99	82.727	ENSDARG00000012776	smarca1	97	82.061	Danio_rerio
ENSSFOG00015016794	smarca5	100	94.014	ENSDARG00000052348	smarca5	97	92.008	Danio_rerio
ENSSFOG00015016794	smarca5	98	84.688	ENSDNOG00000004315	SMARCA1	92	83.753	Dasypus_novemcinctus
ENSSFOG00015016794	smarca5	98	84.583	ENSDORG00000009270	Smarca1	94	82.125	Dipodomys_ordii
ENSSFOG00015016794	smarca5	96	77.054	FBgn0011604	Iswi	94	76.107	Drosophila_melanogaster
ENSSFOG00015016794	smarca5	84	78.182	ENSETEG00000017426	SMARCA1	83	78.182	Echinops_telfairi
ENSSFOG00015016794	smarca5	99	82.609	ENSEBUG00000001239	smarca5	98	80.742	Eptatretus_burgeri
ENSSFOG00015016794	smarca5	100	79.303	ENSEASG00005008218	SMARCA1	99	79.367	Equus_asinus_asinus
ENSSFOG00015016794	smarca5	100	83.608	ENSECAG00000012106	SMARCA1	93	82.661	Equus_caballus
ENSSFOG00015016794	smarca5	82	82.724	ENSEEUG00000014927	SMARCA1	80	82.724	Erinaceus_europaeus
ENSSFOG00015016794	smarca5	99	84.314	ENSELUG00000010515	smarca1	96	84.065	Esox_lucius
ENSSFOG00015016794	smarca5	100	83.505	ENSFCAG00000018496	SMARCA1	96	81.201	Felis_catus
ENSSFOG00015016794	smarca5	94	85.980	ENSFALG00000000209	SMARCA1	98	85.980	Ficedula_albicollis
ENSSFOG00015016794	smarca5	98	83.107	ENSFDAG00000009818	SMARCA1	95	82.195	Fukomys_damarensis
ENSSFOG00015016794	smarca5	100	92.680	ENSFHEG00000007687	smarca5	97	89.892	Fundulus_heteroclitus
ENSSFOG00015016794	smarca5	98	85.895	ENSGALG00000008431	SMARCA1	96	84.979	Gallus_gallus
ENSSFOG00015016794	smarca5	100	93.093	ENSGAFG00000017731	smarca5	97	91.218	Gambusia_affinis
ENSSFOG00015016794	smarca5	100	85.052	ENSGAGG00000023575	SMARCA1	99	85.052	Gopherus_agassizii
ENSSFOG00015016794	smarca5	73	92.000	ENSGGOG00000012841	-	95	77.983	Gorilla_gorilla
ENSSFOG00015016794	smarca5	100	82.577	ENSHGLG00000003080	SMARCA1	94	81.552	Heterocephalus_glaber_female
ENSSFOG00015016794	smarca5	99	82.559	ENSHGLG00100001102	SMARCA1	99	81.062	Heterocephalus_glaber_male
ENSSFOG00015016794	smarca5	100	93.505	ENSHCOG00000005458	smarca5	98	90.837	Hippocampus_comes
ENSSFOG00015016794	smarca5	100	94.530	ENSIPUG00000005229	SMARCA5	98	93.706	Ictalurus_punctatus
ENSSFOG00015016794	smarca5	99	84.314	ENSIPUG00000016905	Smarca1	99	84.221	Ictalurus_punctatus
ENSSFOG00015016794	smarca5	100	83.505	ENSSTOG00000014524	SMARCA1	98	80.652	Ictidomys_tridecemlineatus
ENSSFOG00015016794	smarca5	100	82.371	ENSJJAG00000002593	Smarca1	94	81.043	Jaculus_jaculus
ENSSFOG00015016794	smarca5	100	92.784	ENSKMAG00000003777	smarca5	95	92.653	Kryptolebias_marmoratus
ENSSFOG00015016794	smarca5	94	93.092	ENSLBEG00000013295	SMARCA1	100	94.177	Labrus_bergylta
ENSSFOG00015016794	smarca5	100	92.990	ENSLBEG00000018112	smarca5	95	92.959	Labrus_bergylta
ENSSFOG00015016794	smarca5	99	85.492	ENSLACG00000016697	SMARCA1	95	85.552	Latimeria_chalumnae
ENSSFOG00015016794	smarca5	99	85.552	ENSLOCG00000014591	smarca1	95	85.451	Lepisosteus_oculatus
ENSSFOG00015016794	smarca5	99	82.766	ENSLAFG00000000896	SMARCA1	99	81.263	Loxodonta_africana
ENSSFOG00015016794	smarca5	100	83.814	ENSMFAG00000002117	SMARCA1	95	83.820	Macaca_fascicularis
ENSSFOG00015016794	smarca5	98	85.005	ENSMMUG00000008818	SMARCA1	98	84.558	Macaca_mulatta
ENSSFOG00015016794	smarca5	98	85.005	ENSMNEG00000041768	SMARCA1	95	83.820	Macaca_nemestrina
ENSSFOG00015016794	smarca5	100	83.814	ENSMLEG00000043198	SMARCA1	95	82.154	Mandrillus_leucophaeus
ENSSFOG00015016794	smarca5	100	93.711	ENSMAMG00000014294	smarca5	94	93.469	Mastacembelus_armatus
ENSSFOG00015016794	smarca5	100	93.299	ENSMZEG00005009369	smarca5	97	91.317	Maylandia_zebra
ENSSFOG00015016794	smarca5	100	84.012	ENSMGAG00000007042	SMARCA1	99	83.167	Meleagris_gallopavo
ENSSFOG00015016794	smarca5	98	83.210	ENSMAUG00000008133	Smarca1	93	80.943	Mesocricetus_auratus
ENSSFOG00015016794	smarca5	100	83.814	ENSMICG00000015768	SMARCA1	96	81.441	Microcebus_murinus
ENSSFOG00015016794	smarca5	100	82.474	ENSMOCG00000009464	Smarca1	95	80.178	Microtus_ochrogaster
ENSSFOG00015016794	smarca5	100	92.062	ENSMMOG00000005547	smarca5	99	91.194	Mola_mola
ENSSFOG00015016794	smarca5	100	84.639	ENSMODG00000013187	-	95	83.350	Monodelphis_domestica
ENSSFOG00015016794	smarca5	100	93.608	ENSMALG00000002081	smarca5	96	92.547	Monopterus_albus
ENSSFOG00015016794	smarca5	100	82.577	MGP_CAROLIEiJ_G0033034	Smarca1	94	81.143	Mus_caroli
ENSSFOG00015016794	smarca5	100	82.577	ENSMUSG00000031099	Smarca1	94	81.244	Mus_musculus
ENSSFOG00015016794	smarca5	99	82.988	MGP_PahariEiJ_G0031579	Smarca1	93	81.635	Mus_pahari
ENSSFOG00015016794	smarca5	100	82.577	MGP_SPRETEiJ_G0034192	Smarca1	94	81.244	Mus_spretus
ENSSFOG00015016794	smarca5	100	82.688	ENSMPUG00000017423	SMARCA1	90	80.705	Mustela_putorius_furo
ENSSFOG00015016794	smarca5	100	81.402	ENSMLUG00000029614	SMARCA1	96	79.065	Myotis_lucifugus
ENSSFOG00015016794	smarca5	98	83.949	ENSNGAG00000006492	Smarca1	92	82.690	Nannospalax_galili
ENSSFOG00015016794	smarca5	100	93.402	ENSNBRG00000004463	smarca5	98	93.163	Neolamprologus_brichardi
ENSSFOG00015016794	smarca5	98	84.161	ENSNLEG00000015179	SMARCA1	97	82.099	Nomascus_leucogenys
ENSSFOG00015016794	smarca5	94	76.623	ENSMEUG00000008819	SMARCA1	99	75.499	Notamacropus_eugenii
ENSSFOG00015016794	smarca5	98	83.003	ENSODEG00000012163	SMARCA1	94	80.648	Octodon_degus
ENSSFOG00015016794	smarca5	100	93.402	ENSONIG00000009993	smarca5	97	91.417	Oreochromis_niloticus
ENSSFOG00015016794	smarca5	100	85.258	ENSOANG00000002862	SMARCA1	99	85.258	Ornithorhynchus_anatinus
ENSSFOG00015016794	smarca5	100	83.299	ENSOCUG00000001047	SMARCA1	94	82.359	Oryctolagus_cuniculus
ENSSFOG00015016794	smarca5	100	93.196	ENSORLG00000021998	smarca5	99	89.535	Oryzias_latipes
ENSSFOG00015016794	smarca5	100	93.299	ENSORLG00020017679	smarca5	93	93.395	Oryzias_latipes_hni
ENSSFOG00015016794	smarca5	100	93.196	ENSORLG00015017210	smarca5	94	93.196	Oryzias_latipes_hsok
ENSSFOG00015016794	smarca5	100	93.196	ENSOMEG00000000086	smarca5	95	92.959	Oryzias_melastigma
ENSSFOG00015016794	smarca5	98	83.820	ENSOGAG00000004399	SMARCA1	94	81.579	Otolemur_garnettii
ENSSFOG00015016794	smarca5	100	83.402	ENSOARG00000014638	SMARCA1	99	83.402	Ovis_aries
ENSSFOG00015016794	smarca5	100	83.814	ENSPPAG00000034647	SMARCA1	95	82.154	Pan_paniscus
ENSSFOG00015016794	smarca5	100	83.711	ENSPPRG00000008929	SMARCA1	96	81.398	Panthera_pardus
ENSSFOG00015016794	smarca5	100	81.864	ENSPTIG00000000915	SMARCA1	98	80.550	Panthera_tigris_altaica
ENSSFOG00015016794	smarca5	100	83.814	ENSPTRG00000049876	SMARCA1	93	83.420	Pan_troglodytes
ENSSFOG00015016794	smarca5	100	83.814	ENSPANG00000003871	SMARCA1	95	82.154	Papio_anubis
ENSSFOG00015016794	smarca5	98	83.701	ENSPKIG00000013411	smarca1	96	83.701	Paramormyrops_kingsleyae
ENSSFOG00015016794	smarca5	100	85.052	ENSPSIG00000010101	SMARCA1	99	85.052	Pelodiscus_sinensis
ENSSFOG00015016794	smarca5	98	83.738	ENSPEMG00000017503	Smarca1	93	81.753	Peromyscus_maniculatus_bairdii
ENSSFOG00015016794	smarca5	100	84.845	ENSPCIG00000015460	SMARCA1	97	83.551	Phascolarctos_cinereus
ENSSFOG00015016794	smarca5	100	92.990	ENSPFOG00000007649	smarca5	97	91.018	Poecilia_formosa
ENSSFOG00015016794	smarca5	100	92.990	ENSPLAG00000003363	smarca5	97	91.018	Poecilia_latipinna
ENSSFOG00015016794	smarca5	100	93.093	ENSPMEG00000019849	smarca5	97	91.118	Poecilia_mexicana
ENSSFOG00015016794	smarca5	100	93.093	ENSPREG00000023250	smarca5	97	91.118	Poecilia_reticulata
ENSSFOG00015016794	smarca5	100	80.928	ENSPPYG00000020703	SMARCA1	95	79.362	Pongo_abelii
ENSSFOG00015016794	smarca5	80	76.203	ENSPCOG00000020722	SMARCA1	94	79.941	Propithecus_coquereli
ENSSFOG00015016794	smarca5	91	83.850	ENSPVAG00000003805	SMARCA1	94	75.279	Pteropus_vampyrus
ENSSFOG00015016794	smarca5	60	93.803	ENSPNYG00000012299	smarca5	90	93.151	Pundamilia_nyererei
ENSSFOG00015016794	smarca5	100	82.680	ENSRNOG00000003762	Smarca1	96	80.394	Rattus_norvegicus
ENSSFOG00015016794	smarca5	100	83.918	ENSRROG00000034167	SMARCA1	95	82.253	Rhinopithecus_roxellana
ENSSFOG00015016794	smarca5	100	83.711	ENSSBOG00000020641	SMARCA1	99	83.711	Saimiri_boliviensis_boliviensis
ENSSFOG00015016794	smarca5	100	80.536	ENSSHAG00000013518	SMARCA1	99	80.536	Sarcophilus_harrisii
ENSSFOG00015016794	smarca5	100	92.887	ENSSMAG00000004801	smarca5	95	92.464	Scophthalmus_maximus
ENSSFOG00015016794	smarca5	100	93.402	ENSSDUG00000020690	smarca5	95	93.163	Seriola_dumerili
ENSSFOG00015016794	smarca5	100	93.402	ENSSLDG00000025190	smarca5	95	93.163	Seriola_lalandi_dorsalis
ENSSFOG00015016794	smarca5	84	83.274	ENSSARG00000000842	SMARCA1	81	83.274	Sorex_araneus
ENSSFOG00015016794	smarca5	98	85.579	ENSSPUG00000000590	SMARCA1	95	83.825	Sphenodon_punctatus
ENSSFOG00015016794	smarca5	100	93.608	ENSSPAG00000002894	smarca5	97	93.355	Stegastes_partitus
ENSSFOG00015016794	smarca5	98	84.477	ENSSSCG00000012649	SMARCA1	99	80.471	Sus_scrofa
ENSSFOG00015016794	smarca5	100	84.742	ENSTGUG00000003899	-	99	84.742	Taeniopygia_guttata
ENSSFOG00015016794	smarca5	100	92.371	ENSTRUG00000014094	smarca5	95	92.143	Takifugu_rubripes
ENSSFOG00015016794	smarca5	100	91.649	ENSTNIG00000017717	smarca5	94	91.429	Tetraodon_nigroviridis
ENSSFOG00015016794	smarca5	92	82.353	ENSTBEG00000014973	SMARCA1	89	82.506	Tupaia_belangeri
ENSSFOG00015016794	smarca5	98	80.396	ENSTTRG00000006168	SMARCA1	96	80.526	Tursiops_truncatus
ENSSFOG00015016794	smarca5	100	83.402	ENSUAMG00000020201	SMARCA1	95	81.467	Ursus_americanus
ENSSFOG00015016794	smarca5	98	80.781	ENSUMAG00000004073	SMARCA1	97	83.212	Ursus_maritimus
ENSSFOG00015016794	smarca5	78	87.171	ENSVPAG00000010492	-	77	87.889	Vicugna_pacos
ENSSFOG00015016794	smarca5	100	83.711	ENSVVUG00000008878	SMARCA1	98	85.075	Vulpes_vulpes
ENSSFOG00015016794	smarca5	99	84.695	ENSXETG00000001526	smarca1	98	84.545	Xenopus_tropicalis
ENSSFOG00015016794	smarca5	100	93.093	ENSXCOG00000011170	smarca5	99	91.218	Xiphophorus_couchianus
ENSSFOG00015016794	smarca5	100	93.093	ENSXMAG00000009678	smarca5	98	93.122	Xiphophorus_maculatus