EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015016939 (Gene tree)
Gene ID: 108930154
Gene Symbol: edc3
Alias: FLJ21128|LSM16|YJDC|YJEFN2|hYjeF_N2-15q23
Full Name: enhancer of mRNA decapping 3
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 17706 bases
Position: chrKV410915.1:769695-787400
Accession: 108930154
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015026327	FDF	PF09532.10	4.5e-09	1	1
ENSSFOP00015026336	FDF	PF09532.10	4.5e-09	1	1
ENSSFOP00015026327	LSM14	PF12701.7	8e-11	1	1
ENSSFOP00015026336	LSM14	PF12701.7	8e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015026630	-	6226	XM_018745262	ENSSFOP00015026336	503 (aa)	XP_018600778	A0A1W4ZJ30
ENSSFOT00015026621	-	6789	-	ENSSFOP00015026327	503 (aa)	-	A0A1W4ZJ30

Gene Model

Click here to download ENSSFOG00015016939's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015016939's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015016939	edc3	100	73.320	ENSSFOG00015002439	edc3	100	73.413

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015016939	edc3	100	70.623	ENSG00000179151	EDC3	100	81.481	Homo_sapiens
ENSSFOG00015016939	edc3	100	60.198	ENSAPOG00000008655	EDC3	100	60.040	Acanthochromis_polyacanthus
ENSSFOG00015016939	edc3	100	80.318	ENSAPOG00000010791	edc3	100	79.722	Acanthochromis_polyacanthus
ENSSFOG00015016939	edc3	100	70.817	ENSAMEG00000008963	EDC3	100	70.135	Ailuropoda_melanoleuca
ENSSFOG00015016939	edc3	99	64.764	ENSACIG00000005330	EDC3	99	64.912	Amphilophus_citrinellus
ENSSFOG00015016939	edc3	100	77.734	ENSACIG00000017751	edc3	100	77.932	Amphilophus_citrinellus
ENSSFOG00015016939	edc3	100	80.318	ENSAOCG00000005431	edc3	100	79.722	Amphiprion_ocellaris
ENSSFOG00015016939	edc3	100	64.683	ENSAOCG00000009103	-	100	64.286	Amphiprion_ocellaris
ENSSFOG00015016939	edc3	100	80.318	ENSAPEG00000000968	edc3	100	79.722	Amphiprion_percula
ENSSFOG00015016939	edc3	100	64.881	ENSAPEG00000007841	EDC3	100	64.484	Amphiprion_percula
ENSSFOG00015016939	edc3	100	79.722	ENSATEG00000015505	edc3	100	79.920	Anabas_testudineus
ENSSFOG00015016939	edc3	100	66.004	ENSATEG00000004205	-	100	65.408	Anabas_testudineus
ENSSFOG00015016939	edc3	89	69.957	ENSAPLG00000008957	EDC3	87	76.559	Anas_platyrhynchos
ENSSFOG00015016939	edc3	78	67.830	ENSACAG00000000460	-	100	67.332	Anolis_carolinensis
ENSSFOG00015016939	edc3	100	70.817	ENSANAG00000024078	EDC3	100	69.942	Aotus_nancymaae
ENSSFOG00015016939	edc3	100	78.728	ENSACLG00000007232	edc3	100	78.728	Astatotilapia_calliptera
ENSSFOG00015016939	edc3	99	64.671	ENSACLG00000018776	-	99	64.671	Astatotilapia_calliptera
ENSSFOG00015016939	edc3	100	80.315	ENSAMXG00000001589	edc3	100	79.412	Astyanax_mexicanus
ENSSFOG00015016939	edc3	100	70.623	ENSBTAG00000007308	EDC3	100	70.428	Bos_taurus
ENSSFOG00015016939	edc3	100	70.623	ENSCJAG00000017681	EDC3	100	69.942	Callithrix_jacchus
ENSSFOG00015016939	edc3	100	71.012	ENSCAFG00000017935	EDC3	100	70.328	Canis_familiaris
ENSSFOG00015016939	edc3	100	71.012	ENSCAFG00020003909	EDC3	100	70.328	Canis_lupus_dingo
ENSSFOG00015016939	edc3	100	71.012	ENSCHIG00000023658	EDC3	100	70.817	Capra_hircus
ENSSFOG00015016939	edc3	100	71.206	ENSTSYG00000004822	EDC3	100	70.623	Carlito_syrichta
ENSSFOG00015016939	edc3	100	72.179	ENSCPOG00000015595	EDC3	100	70.817	Cavia_porcellus
ENSSFOG00015016939	edc3	100	70.817	ENSCCAG00000021663	EDC3	100	70.135	Cebus_capucinus
ENSSFOG00015016939	edc3	100	71.206	ENSCATG00000037511	EDC3	100	70.233	Cercocebus_atys
ENSSFOG00015016939	edc3	100	72.179	ENSCLAG00000005700	EDC3	100	70.817	Chinchilla_lanigera
ENSSFOG00015016939	edc3	100	71.206	ENSCSAG00000014239	EDC3	100	70.233	Chlorocebus_sabaeus
ENSSFOG00015016939	edc3	99	72.266	ENSCPBG00000024239	EDC3	99	71.680	Chrysemys_picta_bellii
ENSSFOG00015016939	edc3	99	36.944	ENSCING00000022142	-	99	36.873	Ciona_intestinalis
ENSSFOG00015016939	edc3	100	71.206	ENSCANG00000028699	EDC3	100	70.233	Colobus_angolensis_palliatus
ENSSFOG00015016939	edc3	100	71.012	ENSCGRG00001013874	Edc3	100	70.623	Cricetulus_griseus_chok1gshd
ENSSFOG00015016939	edc3	100	71.012	ENSCGRG00000011885	Edc3	100	70.623	Cricetulus_griseus_crigri
ENSSFOG00015016939	edc3	99	79.242	ENSCSEG00000012996	edc3	99	79.242	Cynoglossus_semilaevis
ENSSFOG00015016939	edc3	100	79.324	ENSCVAG00000008023	edc3	100	79.125	Cyprinodon_variegatus
ENSSFOG00015016939	edc3	99	78.698	ENSDARG00000051931	edc3	99	78.304	Danio_rerio
ENSSFOG00015016939	edc3	100	63.198	ENSDNOG00000030661	EDC3	100	63.006	Dasypus_novemcinctus
ENSSFOG00015016939	edc3	66	83.333	ENSETEG00000002398	-	64	83.333	Echinops_telfairi
ENSSFOG00015016939	edc3	100	70.817	ENSEASG00005005071	EDC3	100	70.135	Equus_asinus_asinus
ENSSFOG00015016939	edc3	100	70.817	ENSECAG00000017994	EDC3	100	70.135	Equus_caballus
ENSSFOG00015016939	edc3	100	75.794	ENSELUG00000005794	edc3	100	75.397	Esox_lucius
ENSSFOG00015016939	edc3	100	68.288	ENSELUG00000007607	EDC3	100	68.515	Esox_lucius
ENSSFOG00015016939	edc3	100	71.012	ENSFCAG00000002014	EDC3	100	70.817	Felis_catus
ENSSFOG00015016939	edc3	98	71.769	ENSFALG00000004543	EDC3	96	71.769	Ficedula_albicollis
ENSSFOG00015016939	edc3	100	71.984	ENSFDAG00000012582	EDC3	100	70.817	Fukomys_damarensis
ENSSFOG00015016939	edc3	100	80.119	ENSFHEG00000009375	edc3	100	79.920	Fundulus_heteroclitus
ENSSFOG00015016939	edc3	100	78.529	ENSGMOG00000002715	edc3	100	79.125	Gadus_morhua
ENSSFOG00015016939	edc3	99	71.765	ENSGALG00000040181	EDC3	99	71.569	Gallus_gallus
ENSSFOG00015016939	edc3	100	78.529	ENSGAFG00000014433	edc3	100	78.330	Gambusia_affinis
ENSSFOG00015016939	edc3	99	62.548	ENSGACG00000014671	EDC3	69	74.074	Gasterosteus_aculeatus
ENSSFOG00015016939	edc3	100	77.734	ENSGACG00000009783	edc3	100	77.734	Gasterosteus_aculeatus
ENSSFOG00015016939	edc3	99	72.549	ENSGAGG00000023477	EDC3	99	71.790	Gopherus_agassizii
ENSSFOG00015016939	edc3	100	70.623	ENSGGOG00000003552	EDC3	100	69.942	Gorilla_gorilla
ENSSFOG00015016939	edc3	100	78.728	ENSHBUG00000003635	edc3	100	78.728	Haplochromis_burtoni
ENSSFOG00015016939	edc3	99	64.870	ENSHBUG00000020817	EDC3	99	65.269	Haplochromis_burtoni
ENSSFOG00015016939	edc3	100	75.944	ENSHCOG00000016834	edc3	100	76.541	Hippocampus_comes
ENSSFOG00015016939	edc3	99	80.159	ENSIPUG00000005695	edc3	99	79.084	Ictalurus_punctatus
ENSSFOG00015016939	edc3	100	71.206	ENSSTOG00000013936	EDC3	100	70.623	Ictidomys_tridecemlineatus
ENSSFOG00015016939	edc3	100	71.206	ENSJJAG00000008074	Edc3	100	70.428	Jaculus_jaculus
ENSSFOG00015016939	edc3	100	62.109	ENSKMAG00000001987	EDC3	100	62.624	Kryptolebias_marmoratus
ENSSFOG00015016939	edc3	100	79.125	ENSKMAG00000001243	edc3	100	79.125	Kryptolebias_marmoratus
ENSSFOG00015016939	edc3	100	63.938	ENSLBEG00000017984	EDC3	100	63.889	Labrus_bergylta
ENSSFOG00015016939	edc3	100	79.324	ENSLBEG00000013435	edc3	99	80.119	Labrus_bergylta
ENSSFOG00015016939	edc3	99	71.869	ENSLACG00000014149	EDC3	99	71.373	Latimeria_chalumnae
ENSSFOG00015016939	edc3	99	74.405	ENSLOCG00000014625	edc3	99	74.257	Lepisosteus_oculatus
ENSSFOG00015016939	edc3	100	70.565	ENSLAFG00000002992	EDC3	100	69.786	Loxodonta_africana
ENSSFOG00015016939	edc3	100	71.206	ENSMFAG00000043074	EDC3	100	70.039	Macaca_fascicularis
ENSSFOG00015016939	edc3	100	71.206	ENSMMUG00000011071	EDC3	100	70.039	Macaca_mulatta
ENSSFOG00015016939	edc3	100	71.206	ENSMNEG00000035316	EDC3	100	70.039	Macaca_nemestrina
ENSSFOG00015016939	edc3	100	71.206	ENSMLEG00000030372	EDC3	100	70.233	Mandrillus_leucophaeus
ENSSFOG00015016939	edc3	100	78.571	ENSMAMG00000000505	edc3	100	78.926	Mastacembelus_armatus
ENSSFOG00015016939	edc3	99	63.273	ENSMAMG00000005423	-	99	63.673	Mastacembelus_armatus
ENSSFOG00015016939	edc3	100	78.529	ENSMZEG00005004892	edc3	100	78.529	Maylandia_zebra
ENSSFOG00015016939	edc3	99	65.415	ENSMZEG00005005654	EDC3	99	65.538	Maylandia_zebra
ENSSFOG00015016939	edc3	99	71.765	ENSMGAG00000002617	EDC3	99	71.569	Meleagris_gallopavo
ENSSFOG00015016939	edc3	100	71.595	ENSMICG00000043190	EDC3	100	71.595	Microcebus_murinus
ENSSFOG00015016939	edc3	100	70.428	ENSMOCG00000016205	Edc3	100	69.750	Microtus_ochrogaster
ENSSFOG00015016939	edc3	99	80.639	ENSMMOG00000012278	edc3	99	80.838	Mola_mola
ENSSFOG00015016939	edc3	99	71.289	ENSMODG00000009442	EDC3	99	70.793	Monodelphis_domestica
ENSSFOG00015016939	edc3	100	79.324	ENSMALG00000008658	edc3	100	79.125	Monopterus_albus
ENSSFOG00015016939	edc3	100	70.817	MGP_CAROLIEiJ_G0032280	Edc3	100	78.462	Mus_caroli
ENSSFOG00015016939	edc3	100	70.817	ENSMUSG00000038957	Edc3	100	78.462	Mus_musculus
ENSSFOG00015016939	edc3	100	71.012	MGP_PahariEiJ_G0015146	Edc3	100	78.462	Mus_pahari
ENSSFOG00015016939	edc3	100	69.674	MGP_SPRETEiJ_G0033420	Edc3	100	78.462	Mus_spretus
ENSSFOG00015016939	edc3	100	71.012	ENSMPUG00000017293	EDC3	100	70.817	Mustela_putorius_furo
ENSSFOG00015016939	edc3	100	70.930	ENSMLUG00000016382	EDC3	100	70.543	Myotis_lucifugus
ENSSFOG00015016939	edc3	100	70.039	ENSNGAG00000010923	Edc3	100	70.039	Nannospalax_galili
ENSSFOG00015016939	edc3	100	78.131	ENSNBRG00000002434	edc3	100	78.131	Neolamprologus_brichardi
ENSSFOG00015016939	edc3	99	65.936	ENSNBRG00000007881	EDC3	99	65.098	Neolamprologus_brichardi
ENSSFOG00015016939	edc3	100	62.062	ENSNLEG00000014577	EDC3	100	61.464	Nomascus_leucogenys
ENSSFOG00015016939	edc3	99	71.373	ENSMEUG00000009077	EDC3	99	70.565	Notamacropus_eugenii
ENSSFOG00015016939	edc3	81	83.333	ENSOPRG00000009540	-	79	83.333	Ochotona_princeps
ENSSFOG00015016939	edc3	100	78.728	ENSONIG00000008434	edc3	100	78.728	Oreochromis_niloticus
ENSSFOG00015016939	edc3	99	64.797	ENSONIG00000002932	-	99	64.797	Oreochromis_niloticus
ENSSFOG00015016939	edc3	78	68.657	ENSOCUG00000017740	EDC3	86	67.662	Oryctolagus_cuniculus
ENSSFOG00015016939	edc3	100	64.414	ENSORLG00000014399	-	98	64.414	Oryzias_latipes
ENSSFOG00015016939	edc3	100	76.938	ENSORLG00000004883	edc3	100	76.938	Oryzias_latipes
ENSSFOG00015016939	edc3	100	64.414	ENSORLG00020019446	-	100	64.414	Oryzias_latipes_hni
ENSSFOG00015016939	edc3	100	76.938	ENSORLG00020012262	edc3	100	76.938	Oryzias_latipes_hni
ENSSFOG00015016939	edc3	100	77.137	ENSORLG00015005634	edc3	100	77.137	Oryzias_latipes_hsok
ENSSFOG00015016939	edc3	100	64.414	ENSORLG00015017635	-	96	64.414	Oryzias_latipes_hsok
ENSSFOG00015016939	edc3	100	78.529	ENSOMEG00000014026	edc3	100	78.330	Oryzias_melastigma
ENSSFOG00015016939	edc3	100	64.811	ENSOMEG00000017354	EDC3	100	64.414	Oryzias_melastigma
ENSSFOG00015016939	edc3	100	71.206	ENSOGAG00000014441	EDC3	100	70.817	Otolemur_garnettii
ENSSFOG00015016939	edc3	100	70.291	ENSOARG00000003476	EDC3	100	70.485	Ovis_aries
ENSSFOG00015016939	edc3	100	70.623	ENSPPAG00000040143	EDC3	100	69.942	Pan_paniscus
ENSSFOG00015016939	edc3	100	71.012	ENSPPRG00000006257	EDC3	100	70.817	Panthera_pardus
ENSSFOG00015016939	edc3	100	71.012	ENSPTIG00000017424	EDC3	100	70.817	Panthera_tigris_altaica
ENSSFOG00015016939	edc3	100	70.623	ENSPTRG00000007279	EDC3	100	69.942	Pan_troglodytes
ENSSFOG00015016939	edc3	100	71.206	ENSPANG00000015997	EDC3	100	70.233	Papio_anubis
ENSSFOG00015016939	edc3	99	78.937	ENSPKIG00000004416	edc3	99	78.458	Paramormyrops_kingsleyae
ENSSFOG00015016939	edc3	100	80.754	ENSPKIG00000019810	EDC3	100	80.556	Paramormyrops_kingsleyae
ENSSFOG00015016939	edc3	99	68.164	ENSPSIG00000008474	EDC3	99	67.383	Pelodiscus_sinensis
ENSSFOG00015016939	edc3	100	77.137	ENSPMGG00000007223	edc3	100	77.137	Periophthalmus_magnuspinnatus
ENSSFOG00015016939	edc3	100	71.401	ENSPEMG00000015260	Edc3	100	70.623	Peromyscus_maniculatus_bairdii
ENSSFOG00015016939	edc3	99	71.569	ENSPCIG00000006276	EDC3	70	70.370	Phascolarctos_cinereus
ENSSFOG00015016939	edc3	100	79.125	ENSPFOG00000012204	edc3	100	79.125	Poecilia_formosa
ENSSFOG00015016939	edc3	100	79.125	ENSPLAG00000014420	edc3	100	79.125	Poecilia_latipinna
ENSSFOG00015016939	edc3	100	79.125	ENSPMEG00000023289	edc3	100	79.125	Poecilia_mexicana
ENSSFOG00015016939	edc3	100	78.728	ENSPREG00000016022	edc3	100	78.728	Poecilia_reticulata
ENSSFOG00015016939	edc3	100	69.650	ENSPPYG00000006642	EDC3	100	68.979	Pongo_abelii
ENSSFOG00015016939	edc3	89	81.481	ENSPCAG00000002802	EDC3	88	81.481	Procavia_capensis
ENSSFOG00015016939	edc3	100	71.790	ENSPCOG00000013364	EDC3	100	71.595	Propithecus_coquereli
ENSSFOG00015016939	edc3	100	71.012	ENSPVAG00000014733	EDC3	100	70.135	Pteropus_vampyrus
ENSSFOG00015016939	edc3	99	64.870	ENSPNYG00000009669	EDC3	99	65.269	Pundamilia_nyererei
ENSSFOG00015016939	edc3	100	78.728	ENSPNYG00000021797	edc3	100	78.728	Pundamilia_nyererei
ENSSFOG00015016939	edc3	100	81.102	ENSPNAG00000019657	edc3	100	80.588	Pygocentrus_nattereri
ENSSFOG00015016939	edc3	99	70.450	ENSRNOG00000019579	Edc3	99	70.254	Rattus_norvegicus
ENSSFOG00015016939	edc3	100	71.206	ENSRBIG00000019488	EDC3	100	70.428	Rhinopithecus_bieti
ENSSFOG00015016939	edc3	100	71.206	ENSRROG00000034959	EDC3	100	70.428	Rhinopithecus_roxellana
ENSSFOG00015016939	edc3	100	71.206	ENSSBOG00000004896	EDC3	100	70.135	Saimiri_boliviensis_boliviensis
ENSSFOG00015016939	edc3	96	70.588	ENSSHAG00000015075	EDC3	95	69.980	Sarcophilus_harrisii
ENSSFOG00015016939	edc3	100	78.728	ENSSMAG00000010695	edc3	100	79.523	Scophthalmus_maximus
ENSSFOG00015016939	edc3	99	65.269	ENSSMAG00000010176	-	99	65.269	Scophthalmus_maximus
ENSSFOG00015016939	edc3	100	79.722	ENSSDUG00000021844	edc3	100	80.517	Seriola_dumerili
ENSSFOG00015016939	edc3	100	67.396	ENSSDUG00000007671	EDC3	100	66.799	Seriola_dumerili
ENSSFOG00015016939	edc3	100	79.920	ENSSLDG00000022046	edc3	100	80.716	Seriola_lalandi_dorsalis
ENSSFOG00015016939	edc3	79	80.242	ENSSARG00000003907	EDC3	80	80.242	Sorex_araneus
ENSSFOG00015016939	edc3	99	70.703	ENSSPUG00000008232	EDC3	99	70.117	Sphenodon_punctatus
ENSSFOG00015016939	edc3	100	80.119	ENSSPAG00000010009	edc3	100	79.563	Stegastes_partitus
ENSSFOG00015016939	edc3	100	65.278	ENSSPAG00000020327	EDC3	100	65.408	Stegastes_partitus
ENSSFOG00015016939	edc3	100	70.428	ENSSSCG00000001903	EDC3	100	69.980	Sus_scrofa
ENSSFOG00015016939	edc3	99	72.157	ENSTGUG00000004007	EDC3	99	72.157	Taeniopygia_guttata
ENSSFOG00015016939	edc3	100	79.920	ENSTRUG00000017078	edc3	100	79.523	Takifugu_rubripes
ENSSFOG00015016939	edc3	100	78.218	ENSTNIG00000016047	edc3	100	78.218	Tetraodon_nigroviridis
ENSSFOG00015016939	edc3	100	70.760	ENSTTRG00000007990	EDC3	100	70.077	Tursiops_truncatus
ENSSFOG00015016939	edc3	100	70.817	ENSUAMG00000026710	-	100	70.135	Ursus_americanus
ENSSFOG00015016939	edc3	100	70.817	ENSUMAG00000005006	EDC3	96	70.135	Ursus_maritimus
ENSSFOG00015016939	edc3	81	72.222	ENSVPAG00000003499	-	79	72.222	Vicugna_pacos
ENSSFOG00015016939	edc3	100	71.012	ENSVVUG00000018601	EDC3	100	70.328	Vulpes_vulpes
ENSSFOG00015016939	edc3	70	75.852	ENSXETG00000010622	edc3	99	76.705	Xenopus_tropicalis
ENSSFOG00015016939	edc3	100	78.926	ENSXMAG00000007377	edc3	100	78.926	Xiphophorus_maculatus