EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015017252 (Gene tree)
Gene ID: 108935216
Gene Symbol: smg7
Alias: fa99h10|wu:fa99h10
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 26428 bases
Position: chrKV411097.1:8668927-8695354
Accession: 108935216
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015026998	EST1	PF10374.9	4.6e-25	1	1
ENSSFOP00015026948	EST1	PF10374.9	4.7e-25	1	1
ENSSFOP00015026911	EST1	PF10374.9	4.9e-25	1	1
ENSSFOP00015026834	EST1	PF10374.9	5.2e-25	1	1
ENSSFOP00015026870	EST1	PF10374.9	5.2e-25	1	1
ENSSFOP00015026998	EST1_DNA_bind	PF10373.9	3.3e-50	1	1
ENSSFOP00015026948	EST1_DNA_bind	PF10373.9	3.4e-50	1	1
ENSSFOP00015026911	EST1_DNA_bind	PF10373.9	3.6e-50	1	1
ENSSFOP00015026834	EST1_DNA_bind	PF10373.9	4.1e-50	1	1
ENSSFOP00015026870	EST1_DNA_bind	PF10373.9	4.1e-50	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015027139	-	6746	-	ENSSFOP00015026834	1172 (aa)	-	A0A1W4ZZU1
ENSSFOT00015027175	-	7018	XM_018753638	ENSSFOP00015026870	1172 (aa)	XP_018609154	A0A1W4ZZU1
ENSSFOT00015027256	-	6781	XM_018753640	ENSSFOP00015026948	1093 (aa)	XP_018609156	A0A1W5A8T1
ENSSFOT00015027306	-	3222	-	ENSSFOP00015026998	1073 (aa)	-	-
ENSSFOT00015027219	-	6868	XM_018753639	ENSSFOP00015026911	1122 (aa)	XP_018609155	A0A1W5A856

Gene Model

Click here to download ENSSFOG00015017252's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015017252's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015017252	smg7	99	76.842	ENSG00000116698	SMG7	86	93.082	Homo_sapiens
ENSSFOG00015017252	smg7	89	81.413	ENSAPOG00000009611	smg7	96	81.203	Acanthochromis_polyacanthus
ENSSFOG00015017252	smg7	96	76.842	ENSAMEG00000002357	SMG7	92	76.842	Ailuropoda_melanoleuca
ENSSFOG00015017252	smg7	98	71.688	ENSACIG00000015152	smg7	97	80.102	Amphilophus_citrinellus
ENSSFOG00015017252	smg7	100	74.834	ENSAOCG00000013538	smg7	100	75.579	Amphiprion_ocellaris
ENSSFOG00015017252	smg7	100	74.855	ENSAPEG00000007851	smg7	100	75.600	Amphiprion_percula
ENSSFOG00015017252	smg7	100	73.454	ENSATEG00000006931	smg7	100	73.947	Anabas_testudineus
ENSSFOG00015017252	smg7	99	68.990	ENSAPLG00000015811	SMG7	99	68.821	Anas_platyrhynchos
ENSSFOG00015017252	smg7	99	75.393	ENSACAG00000014989	SMG7	99	68.439	Anolis_carolinensis
ENSSFOG00015017252	smg7	99	76.316	ENSANAG00000028114	SMG7	84	92.903	Aotus_nancymaae
ENSSFOG00015017252	smg7	100	74.545	ENSACLG00000022079	smg7	100	74.854	Astatotilapia_calliptera
ENSSFOG00015017252	smg7	100	83.500	ENSAMXG00000020809	smg7	100	79.191	Astyanax_mexicanus
ENSSFOG00015017252	smg7	99	75.789	ENSBTAG00000008003	SMG7	99	68.614	Bos_taurus
ENSSFOG00015017252	smg7	99	75.263	ENSCJAG00000005135	SMG7	85	92.903	Callithrix_jacchus
ENSSFOG00015017252	smg7	99	76.842	ENSCAFG00000013276	SMG7	89	76.842	Canis_familiaris
ENSSFOG00015017252	smg7	99	76.842	ENSCAFG00020015475	SMG7	89	89.024	Canis_lupus_dingo
ENSSFOG00015017252	smg7	99	76.316	ENSCHIG00000018192	SMG7	91	76.316	Capra_hircus
ENSSFOG00015017252	smg7	99	76.316	ENSTSYG00000002667	SMG7	80	92.903	Carlito_syrichta
ENSSFOG00015017252	smg7	99	75.789	ENSCPOG00000008906	SMG7	91	75.789	Cavia_porcellus
ENSSFOG00015017252	smg7	96	76.842	ENSCCAG00000028596	SMG7	84	92.903	Cebus_capucinus
ENSSFOG00015017252	smg7	99	76.842	ENSCATG00000011063	SMG7	84	92.903	Cercocebus_atys
ENSSFOG00015017252	smg7	99	76.316	ENSCLAG00000010751	SMG7	99	69.110	Chinchilla_lanigera
ENSSFOG00015017252	smg7	99	76.316	ENSCSAG00000012654	SMG7	89	76.316	Chlorocebus_sabaeus
ENSSFOG00015017252	smg7	92	70.323	ENSCHOG00000010522	SMG7	86	70.323	Choloepus_hoffmanni
ENSSFOG00015017252	smg7	99	77.487	ENSCPBG00000015724	SMG7	94	75.622	Chrysemys_picta_bellii
ENSSFOG00015017252	smg7	96	76.842	ENSCANG00000015680	SMG7	84	92.903	Colobus_angolensis_palliatus
ENSSFOG00015017252	smg7	99	75.263	ENSCGRG00001013705	Smg7	99	68.728	Cricetulus_griseus_chok1gshd
ENSSFOG00015017252	smg7	99	75.263	ENSCGRG00000018401	Smg7	100	68.591	Cricetulus_griseus_crigri
ENSSFOG00015017252	smg7	99	71.094	ENSCVAG00000011842	smg7	100	70.927	Cyprinodon_variegatus
ENSSFOG00015017252	smg7	99	84.896	ENSDARG00000060767	smg7	100	78.039	Danio_rerio
ENSSFOG00015017252	smg7	99	78.421	ENSDORG00000007331	Smg7	93	76.500	Dipodomys_ordii
ENSSFOG00015017252	smg7	97	67.244	ENSETEG00000002654	SMG7	99	67.042	Echinops_telfairi
ENSSFOG00015017252	smg7	99	76.842	ENSEASG00005006524	SMG7	93	75.000	Equus_asinus_asinus
ENSSFOG00015017252	smg7	98	83.424	ENSECAG00000004313	SMG7	97	83.424	Equus_caballus
ENSSFOG00015017252	smg7	95	72.549	ENSEEUG00000002024	SMG7	94	65.685	Erinaceus_europaeus
ENSSFOG00015017252	smg7	100	77.796	ENSELUG00000010293	smg7	100	77.861	Esox_lucius
ENSSFOG00015017252	smg7	99	75.789	ENSFCAG00000010900	SMG7	99	74.619	Felis_catus
ENSSFOG00015017252	smg7	99	77.604	ENSFALG00000003047	SMG7	93	77.604	Ficedula_albicollis
ENSSFOG00015017252	smg7	99	75.132	ENSFDAG00000012121	SMG7	91	75.132	Fukomys_damarensis
ENSSFOG00015017252	smg7	100	71.577	ENSFHEG00000011073	smg7	100	71.404	Fundulus_heteroclitus
ENSSFOG00015017252	smg7	87	76.893	ENSGMOG00000004916	smg7	91	77.589	Gadus_morhua
ENSSFOG00015017252	smg7	99	69.679	ENSGALG00000004667	SMG7	99	69.478	Gallus_gallus
ENSSFOG00015017252	smg7	100	70.670	ENSGAFG00000019000	smg7	100	70.409	Gambusia_affinis
ENSSFOG00015017252	smg7	97	77.576	ENSGACG00000001634	smg7	91	77.576	Gasterosteus_aculeatus
ENSSFOG00015017252	smg7	99	76.842	ENSGGOG00000002342	SMG7	82	90.625	Gorilla_gorilla
ENSSFOG00015017252	smg7	100	74.319	ENSHBUG00000003726	smg7	100	74.771	Haplochromis_burtoni
ENSSFOG00015017252	smg7	99	75.661	ENSHGLG00000009353	SMG7	99	69.110	Heterocephalus_glaber_female
ENSSFOG00015017252	smg7	99	75.661	ENSHGLG00100009637	-	99	69.023	Heterocephalus_glaber_male
ENSSFOG00015017252	smg7	99	63.492	ENSHGLG00100004878	-	99	60.756	Heterocephalus_glaber_male
ENSSFOG00015017252	smg7	99	84.211	ENSIPUG00000016997	smg7	100	77.553	Ictalurus_punctatus
ENSSFOG00015017252	smg7	99	77.368	ENSSTOG00000000401	SMG7	91	77.368	Ictidomys_tridecemlineatus
ENSSFOG00015017252	smg7	99	76.316	ENSJJAG00000012351	Smg7	91	76.316	Jaculus_jaculus
ENSSFOG00015017252	smg7	98	68.218	ENSKMAG00000004900	smg7	96	78.462	Kryptolebias_marmoratus
ENSSFOG00015017252	smg7	100	72.025	ENSLBEG00000002983	smg7	99	72.806	Labrus_bergylta
ENSSFOG00015017252	smg7	55	68.067	ENSLBEG00000005220	-	75	68.067	Labrus_bergylta
ENSSFOG00015017252	smg7	100	78.646	ENSLACG00000000972	SMG7	99	72.908	Latimeria_chalumnae
ENSSFOG00015017252	smg7	99	75.354	ENSLOCG00000002010	smg7	99	75.167	Lepisosteus_oculatus
ENSSFOG00015017252	smg7	99	76.842	ENSLAFG00000008186	SMG7	91	76.842	Loxodonta_africana
ENSSFOG00015017252	smg7	99	76.842	ENSMFAG00000031653	SMG7	84	92.903	Macaca_fascicularis
ENSSFOG00015017252	smg7	99	76.842	ENSMMUG00000018458	SMG7	91	76.842	Macaca_mulatta
ENSSFOG00015017252	smg7	96	76.842	ENSMNEG00000034798	SMG7	84	92.903	Macaca_nemestrina
ENSSFOG00015017252	smg7	99	76.842	ENSMLEG00000037170	SMG7	92	76.842	Mandrillus_leucophaeus
ENSSFOG00015017252	smg7	88	73.551	ENSMAMG00000018733	smg7	86	74.088	Mastacembelus_armatus
ENSSFOG00015017252	smg7	100	74.793	ENSMZEG00005015247	smg7	100	74.854	Maylandia_zebra
ENSSFOG00015017252	smg7	97	69.190	ENSMGAG00000001561	SMG7	99	69.238	Meleagris_gallopavo
ENSSFOG00015017252	smg7	99	76.842	ENSMAUG00000019484	Smg7	93	75.000	Mesocricetus_auratus
ENSSFOG00015017252	smg7	99	76.316	ENSMICG00000007145	SMG7	81	92.903	Microcebus_murinus
ENSSFOG00015017252	smg7	99	75.789	ENSMOCG00000020748	Smg7	99	68.293	Microtus_ochrogaster
ENSSFOG00015017252	smg7	100	71.034	ENSMMOG00000001524	smg7	98	77.949	Mola_mola
ENSSFOG00015017252	smg7	92	67.700	ENSMODG00000007139	SMG7	99	67.420	Monodelphis_domestica
ENSSFOG00015017252	smg7	100	74.229	ENSMALG00000000061	smg7	94	74.562	Monopterus_albus
ENSSFOG00015017252	smg7	99	76.316	MGP_CAROLIEiJ_G0014704	Smg7	99	68.646	Mus_caroli
ENSSFOG00015017252	smg7	99	76.316	ENSMUSG00000042772	Smg7	99	68.527	Mus_musculus
ENSSFOG00015017252	smg7	99	75.263	MGP_PahariEiJ_G0027940	Smg7	99	68.614	Mus_pahari
ENSSFOG00015017252	smg7	99	76.316	MGP_SPRETEiJ_G0015511	Smg7	99	68.614	Mus_spretus
ENSSFOG00015017252	smg7	99	77.895	ENSMPUG00000011732	SMG7	90	77.895	Mustela_putorius_furo
ENSSFOG00015017252	smg7	99	74.737	ENSMLUG00000015417	SMG7	99	66.807	Myotis_lucifugus
ENSSFOG00015017252	smg7	99	76.316	ENSNGAG00000009836	Smg7	100	69.478	Nannospalax_galili
ENSSFOG00015017252	smg7	99	67.580	ENSNBRG00000024343	smg7	99	67.943	Neolamprologus_brichardi
ENSSFOG00015017252	smg7	99	76.842	ENSNLEG00000018018	SMG7	100	68.852	Nomascus_leucogenys
ENSSFOG00015017252	smg7	71	64.205	ENSMEUG00000004681	SMG7	73	64.205	Notamacropus_eugenii
ENSSFOG00015017252	smg7	93	68.627	ENSOPRG00000013942	SMG7	96	62.740	Ochotona_princeps
ENSSFOG00015017252	smg7	99	75.263	ENSODEG00000010390	SMG7	99	68.848	Octodon_degus
ENSSFOG00015017252	smg7	100	73.517	ENSONIG00000000277	smg7	100	73.917	Oreochromis_niloticus
ENSSFOG00015017252	smg7	98	74.869	ENSOANG00000000994	SMG7	92	74.869	Ornithorhynchus_anatinus
ENSSFOG00015017252	smg7	99	66.500	ENSOCUG00000005887	SMG7	92	64.869	Oryctolagus_cuniculus
ENSSFOG00015017252	smg7	100	70.017	ENSORLG00000007314	smg7	100	70.603	Oryzias_latipes
ENSSFOG00015017252	smg7	100	70.017	ENSORLG00020015779	smg7	100	70.603	Oryzias_latipes_hni
ENSSFOG00015017252	smg7	100	70.938	ENSORLG00015012289	smg7	100	70.352	Oryzias_latipes_hsok
ENSSFOG00015017252	smg7	100	71.106	ENSOMEG00000002328	smg7	100	71.189	Oryzias_melastigma
ENSSFOG00015017252	smg7	95	71.242	ENSOGAG00000003107	SMG7	93	66.290	Otolemur_garnettii
ENSSFOG00015017252	smg7	99	76.316	ENSOARG00000001352	SMG7	100	66.962	Ovis_aries
ENSSFOG00015017252	smg7	96	76.842	ENSPPAG00000031619	SMG7	89	89.571	Pan_paniscus
ENSSFOG00015017252	smg7	99	76.316	ENSPPRG00000011222	SMG7	99	69.607	Panthera_pardus
ENSSFOG00015017252	smg7	96	76.316	ENSPTIG00000007242	SMG7	100	68.826	Panthera_tigris_altaica
ENSSFOG00015017252	smg7	96	76.842	ENSPTRG00000001764	SMG7	84	92.903	Pan_troglodytes
ENSSFOG00015017252	smg7	99	76.842	ENSPANG00000004520	SMG7	99	69.459	Papio_anubis
ENSSFOG00015017252	smg7	100	82.779	ENSPKIG00000007242	smg7	100	83.120	Paramormyrops_kingsleyae
ENSSFOG00015017252	smg7	99	77.487	ENSPSIG00000012201	SMG7	93	75.622	Pelodiscus_sinensis
ENSSFOG00015017252	smg7	71	45.786	ENSPMGG00000021833	smg7	90	54.822	Periophthalmus_magnuspinnatus
ENSSFOG00015017252	smg7	99	76.842	ENSPEMG00000011315	Smg7	93	75.000	Peromyscus_maniculatus_bairdii
ENSSFOG00015017252	smg7	99	75.916	ENSPCIG00000003786	SMG7	89	92.500	Phascolarctos_cinereus
ENSSFOG00015017252	smg7	100	70.917	ENSPFOG00000019219	smg7	100	70.917	Poecilia_formosa
ENSSFOG00015017252	smg7	100	70.670	ENSPLAG00000001446	smg7	100	70.670	Poecilia_latipinna
ENSSFOG00015017252	smg7	97	70.054	ENSPMEG00000005218	smg7	99	70.054	Poecilia_mexicana
ENSSFOG00015017252	smg7	86	73.333	ENSPREG00000019039	smg7	92	68.702	Poecilia_reticulata
ENSSFOG00015017252	smg7	99	69.922	ENSPPYG00000000427	SMG7	99	69.546	Pongo_abelii
ENSSFOG00015017252	smg7	84	74.286	ENSPCAG00000008360	SMG7	86	74.286	Procavia_capensis
ENSSFOG00015017252	smg7	99	76.316	ENSPCOG00000011996	SMG7	76	92.903	Propithecus_coquereli
ENSSFOG00015017252	smg7	90	74.227	ENSPVAG00000000851	SMG7	81	74.227	Pteropus_vampyrus
ENSSFOG00015017252	smg7	100	74.752	ENSPNYG00000007643	smg7	100	75.125	Pundamilia_nyererei
ENSSFOG00015017252	smg7	100	78.571	ENSPNAG00000011374	smg7	100	78.841	Pygocentrus_nattereri
ENSSFOG00015017252	smg7	99	75.916	ENSRNOG00000027962	Smg7	100	68.303	Rattus_norvegicus
ENSSFOG00015017252	smg7	99	76.842	ENSRBIG00000036316	SMG7	92	76.842	Rhinopithecus_bieti
ENSSFOG00015017252	smg7	99	76.842	ENSRROG00000035719	SMG7	92	76.842	Rhinopithecus_roxellana
ENSSFOG00015017252	smg7	99	75.789	ENSSBOG00000023454	SMG7	86	93.082	Saimiri_boliviensis_boliviensis
ENSSFOG00015017252	smg7	100	68.288	ENSSHAG00000013147	SMG7	99	68.472	Sarcophilus_harrisii
ENSSFOG00015017252	smg7	100	72.819	ENSSMAG00000006067	smg7	100	73.261	Scophthalmus_maximus
ENSSFOG00015017252	smg7	96	81.466	ENSSDUG00000017543	smg7	100	74.315	Seriola_dumerili
ENSSFOG00015017252	smg7	100	67.520	ENSSPUG00000002064	SMG7	99	68.320	Sphenodon_punctatus
ENSSFOG00015017252	smg7	99	73.795	ENSSPAG00000008733	smg7	99	74.058	Stegastes_partitus
ENSSFOG00015017252	smg7	99	75.789	ENSSSCG00000015558	SMG7	91	75.789	Sus_scrofa
ENSSFOG00015017252	smg7	99	68.761	ENSTGUG00000003928	SMG7	100	68.591	Taeniopygia_guttata
ENSSFOG00015017252	smg7	99	74.869	ENSTNIG00000002802	smg7	100	66.447	Tetraodon_nigroviridis
ENSSFOG00015017252	smg7	76	69.935	ENSTBEG00000003220	SMG7	75	67.429	Tupaia_belangeri
ENSSFOG00015017252	smg7	95	69.281	ENSTTRG00000014778	SMG7	94	66.057	Tursiops_truncatus
ENSSFOG00015017252	smg7	98	66.060	ENSUAMG00000017473	SMG7	100	66.878	Ursus_americanus
ENSSFOG00015017252	smg7	96	77.368	ENSUMAG00000016389	SMG7	92	77.368	Ursus_maritimus
ENSSFOG00015017252	smg7	99	76.842	ENSVVUG00000008976	SMG7	99	75.635	Vulpes_vulpes
ENSSFOG00015017252	smg7	99	62.985	ENSXETG00000012528	smg7	99	62.640	Xenopus_tropicalis
ENSSFOG00015017252	smg7	100	70.383	ENSXMAG00000007123	smg7	100	70.557	Xiphophorus_maculatus