EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSFOG00015017304 (Gene tree)
Gene ID
108930432
Gene Symbol
pabpc1l
Alias
fi20g03|wu:fi20g03|zgc:55855
Full Name
embryonic polyadenylate-binding protein-like
Gene Type
protein_coding
Species
Scleropages_formosus
Status
putative
Strand
Minus strand
Length
17483 bases
Position
chrKV410922.1:637345-654827
Accession
108930432
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSFOP00015027032PABPPF00658.183e-2911
ENSSFOP00015026966PABPPF00658.188.7e-2611
ENSSFOP00015026995PABPPF00658.189e-2611
ENSSFOP00015027032RRM_5PF13893.61.8e-0711
ENSSFOP00015026966RRM_5PF13893.62.6e-0711
ENSSFOP00015026995RRM_5PF13893.63.1e-0711
ENSSFOP00015027032RRM_1PF00076.221.3e-8814
ENSSFOP00015027032RRM_1PF00076.221.3e-8824
ENSSFOP00015027032RRM_1PF00076.221.3e-8834
ENSSFOP00015027032RRM_1PF00076.221.3e-8844
ENSSFOP00015026966RRM_1PF00076.222e-8814
ENSSFOP00015026966RRM_1PF00076.222e-8824
ENSSFOP00015026966RRM_1PF00076.222e-8834
ENSSFOP00015026966RRM_1PF00076.222e-8844
ENSSFOP00015026995RRM_1PF00076.222.3e-8814
ENSSFOP00015026995RRM_1PF00076.222.3e-8824
ENSSFOP00015026995RRM_1PF00076.222.3e-8834
ENSSFOP00015026995RRM_1PF00076.222.3e-8844
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSFOT00015027340-2472XM_018745661ENSSFOP00015027032625 (aa)XP_018601177A0A0P7X246
ENSSFOT00015027303-2549-ENSSFOP00015026995695 (aa)--
ENSSFOT00015027274-2625-ENSSFOP00015026966672 (aa)--
Gene Model
Click here to download ENSSFOG00015017304's gene model file
Pathways
Pathway IDPathway NameSource
sfm03013RNA transportKEGG
sfm03015mRNA surveillance pathwayKEGG
sfm03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015017304's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSFOG00015017304pabpc1l5335.616ENSSFOG00015022130celf3a6035.616
ENSSFOG00015017304pabpc1l6236.145ENSSFOG00015001257ELAVL29936.145
ENSSFOG00015017304pabpc1l5238.372ENSSFOG00015010315celf5b7036.082
ENSSFOG00015017304pabpc1l9974.802ENSSFOG00015002752-9875.119
ENSSFOG00015017304pabpc1l7075.723ENSSFOG00015019668-9375.723
ENSSFOG00015017304pabpc1l6336.957ENSSFOG00015017503-9236.957
ENSSFOG00015017304pabpc1l9973.851ENSSFOG00015006662pabpc1a9874.010
ENSSFOG00015017304pabpc1l6236.145ENSSFOG00015018252elavl28336.145
ENSSFOG00015017304pabpc1l6036.842ENSSFOG00015006642-7536.842
ENSSFOG00015017304pabpc1l6236.957ENSSFOG00015021786ELAVL19036.957
ENSSFOG00015017304pabpc1l9968.661ENSSFOG00015006617-9868.819
ENSSFOG00015017304pabpc1l9571.144ENSSFOG00015023514pabpc49771.144
ENSSFOG00015017304pabpc1l5633.735ENSSFOG00015002650HNRNPA05531.111
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSFOG00015017304pabpc1l9971.429ENSG00000101104PABPC1L9879.938Homo_sapiens
ENSSFOG00015017304pabpc1l9976.006ENSAPOG00000010842pabpc1l9976.006Acanthochromis_polyacanthus
ENSSFOG00015017304pabpc1l9966.149ENSAMEG00000004099PABPC1L10066.306Ailuropoda_melanoleuca
ENSSFOG00015017304pabpc1l9983.333ENSACIG00000021004-10083.333Amphilophus_citrinellus
ENSSFOG00015017304pabpc1l10076.984ENSAOCG00000006167-10076.984Amphiprion_ocellaris
ENSSFOG00015017304pabpc1l10077.280ENSAPEG00000010558-9992.424Amphiprion_percula
ENSSFOG00015017304pabpc1l10078.378ENSATEG00000007428pabpc1l10079.491Anabas_testudineus
ENSSFOG00015017304pabpc1l9874.679ENSAPLG00000008415PABPC1L9974.603Anas_platyrhynchos
ENSSFOG00015017304pabpc1l9977.316ENSACAG00000011841PABPC1L9877.316Anolis_carolinensis
ENSSFOG00015017304pabpc1l9970.513ENSANAG00000026826PABPC1L9970.513Aotus_nancymaae
ENSSFOG00015017304pabpc1l10079.206ENSACLG00000024791pabpc1l10079.206Astatotilapia_calliptera
ENSSFOG00015017304pabpc1l10084.897ENSAMXG00000013552pabpc1l10084.897Astyanax_mexicanus
ENSSFOG00015017304pabpc1l5888.690ENSBTAG00000055300-10088.690Bos_taurus
ENSSFOG00015017304pabpc1l6567.391ENSBTAG00000016849PABPC1L8567.391Bos_taurus
ENSSFOG00015017304pabpc1l5980.460ENSCJAG00000038506-10080.460Callithrix_jacchus
ENSSFOG00015017304pabpc1l9970.994ENSCJAG00000017628PABPC1L9970.994Callithrix_jacchus
ENSSFOG00015017304pabpc1l9965.997ENSCAFG00000009573PABPC1L10065.997Canis_familiaris
ENSSFOG00015017304pabpc1l9971.704ENSCAFG00020013828PABPC1L9971.704Canis_lupus_dingo
ENSSFOG00015017304pabpc1l9871.522ENSCHIG00000025759PABPC1L9171.522Capra_hircus
ENSSFOG00015017304pabpc1l9970.673ENSTSYG00000006645PABPC1L9970.673Carlito_syrichta
ENSSFOG00015017304pabpc1l9865.233ENSCAPG00000014519PABPC1L9965.233Cavia_aperea
ENSSFOG00015017304pabpc1l9968.095ENSCPOG00000013633PABPC1L9968.095Cavia_porcellus
ENSSFOG00015017304pabpc1l9970.833ENSCCAG00000023338PABPC1L9971.314Cebus_capucinus
ENSSFOG00015017304pabpc1l9971.429ENSCATG00000034065PABPC1L9971.955Cercocebus_atys
ENSSFOG00015017304pabpc1l9967.460ENSCLAG00000005298PABPC1L9968.254Chinchilla_lanigera
ENSSFOG00015017304pabpc1l9971.268ENSCSAG00000014242PABPC1L9971.795Chlorocebus_sabaeus
ENSSFOG00015017304pabpc1l5282.836ENSCPBG00000007810-8282.836Chrysemys_picta_bellii
ENSSFOG00015017304pabpc1l7184.494ENSCPBG00000017755-10084.494Chrysemys_picta_bellii
ENSSFOG00015017304pabpc1l9752.505ENSCING00000002796-9752.906Ciona_intestinalis
ENSSFOG00015017304pabpc1l9959.874ENSCSAVG00000003102-10084.564Ciona_savignyi
ENSSFOG00015017304pabpc1l9972.379ENSCSAVG00000004246-9672.379Ciona_savignyi
ENSSFOG00015017304pabpc1l9968.038ENSCANG00000037530PABPC1L9968.404Colobus_angolensis_palliatus
ENSSFOG00015017304pabpc1l9963.782ENSCGRG00001021938Pabpc1l9963.782Cricetulus_griseus_chok1gshd
ENSSFOG00015017304pabpc1l9963.782ENSCGRG00000007946Pabpc1l9963.782Cricetulus_griseus_crigri
ENSSFOG00015017304pabpc1l9970.465ENSCSEG00000021295pabpc1l9970.465Cynoglossus_semilaevis
ENSSFOG00015017304pabpc1l10078.571ENSCVAG00000015943-9996.183Cyprinodon_variegatus
ENSSFOG00015017304pabpc1l9983.439ENSDARG00000002597pabpc1l8896.923Danio_rerio
ENSSFOG00015017304pabpc1l9972.756ENSDNOG00000048450PABPC1L9972.756Dasypus_novemcinctus
ENSSFOG00015017304pabpc1l9970.096ENSDORG00000001067Pabpc1l9970.096Dipodomys_ordii
ENSSFOG00015017304pabpc1l9680.894ENSETEG00000009969PABPC1L7180.894Echinops_telfairi
ENSSFOG00015017304pabpc1l5767.317ENSEASG00005023407-8267.317Equus_asinus_asinus
ENSSFOG00015017304pabpc1l5886.310ENSEASG00005023408-10086.310Equus_asinus_asinus
ENSSFOG00015017304pabpc1l6670.638ENSECAG00000040139-8470.638Equus_caballus
ENSSFOG00015017304pabpc1l9969.726ENSEEUG00000005978PABPC1L9969.726Erinaceus_europaeus
ENSSFOG00015017304pabpc1l10084.628ENSELUG00000001811pabpc1l10084.628Esox_lucius
ENSSFOG00015017304pabpc1l9972.830ENSFCAG00000011692PABPC1L9972.830Felis_catus
ENSSFOG00015017304pabpc1l8677.222ENSFALG00000005372PABPC1L9773.129Ficedula_albicollis
ENSSFOG00015017304pabpc1l9967.308ENSFDAG00000008291PABPC1L9967.520Fukomys_damarensis
ENSSFOG00015017304pabpc1l10080.127ENSFHEG00000003398pabpc1l10080.127Fundulus_heteroclitus
ENSSFOG00015017304pabpc1l9978.526ENSGMOG00000004437pabpc1l9978.526Gadus_morhua
ENSSFOG00015017304pabpc1l8580.638ENSGALG00000004123PABPC1L9885.956Gallus_gallus
ENSSFOG00015017304pabpc1l10075.529ENSGAFG00000021057pabpc1l10075.529Gambusia_affinis
ENSSFOG00015017304pabpc1l9978.435ENSGACG00000002792pabpc1l9978.435Gasterosteus_aculeatus
ENSSFOG00015017304pabpc1l9983.448ENSGAGG00000000589PABPC1L9883.448Gopherus_agassizii
ENSSFOG00015017304pabpc1l9971.589ENSGGOG00000004584PABPC1L9971.955Gorilla_gorilla
ENSSFOG00015017304pabpc1l10078.889ENSHBUG00000006134pabpc1l10078.889Haplochromis_burtoni
ENSSFOG00015017304pabpc1l9968.790ENSHGLG00000008434PABPC1L9968.949Heterocephalus_glaber_female
ENSSFOG00015017304pabpc1l9968.790ENSHGLG00100012151PABPC1L9968.949Heterocephalus_glaber_male
ENSSFOG00015017304pabpc1l5887.079ENSHGLG00100019506-10087.079Heterocephalus_glaber_male
ENSSFOG00015017304pabpc1l9976.159ENSHCOG00000009270pabpc1l10076.159Hippocampus_comes
ENSSFOG00015017304pabpc1l5863.793ENSIPUG00000006760-8863.793Ictalurus_punctatus
ENSSFOG00015017304pabpc1l10084.738ENSIPUG00000012602pabpc1l10084.738Ictalurus_punctatus
ENSSFOG00015017304pabpc1l5964.368ENSIPUG00000006780-8564.368Ictalurus_punctatus
ENSSFOG00015017304pabpc1l9971.154ENSSTOG00000003739PABPC1L9971.154Ictidomys_tridecemlineatus
ENSSFOG00015017304pabpc1l9955.117ENSJJAG00000022406Pabpc1l9953.451Jaculus_jaculus
ENSSFOG00015017304pabpc1l9979.647ENSKMAG00000016847pabpc1l10079.647Kryptolebias_marmoratus
ENSSFOG00015017304pabpc1l10078.095ENSLBEG00000010084pabpc1l10078.095Labrus_bergylta
ENSSFOG00015017304pabpc1l9976.266ENSLACG00000005762PABPC1L9978.044Latimeria_chalumnae
ENSSFOG00015017304pabpc1l9987.879ENSLOCG00000007519pabpc1l9987.879Lepisosteus_oculatus
ENSSFOG00015017304pabpc1l9972.045ENSLAFG00000003553PABPC1L10072.045Loxodonta_africana
ENSSFOG00015017304pabpc1l9971.429ENSMFAG00000040365PABPC1L9971.955Macaca_fascicularis
ENSSFOG00015017304pabpc1l9970.144ENSMNEG00000032298PABPC1L9970.673Macaca_nemestrina
ENSSFOG00015017304pabpc1l9971.429ENSMLEG00000043139PABPC1L9971.955Mandrillus_leucophaeus
ENSSFOG00015017304pabpc1l9778.913ENSMAMG00000011854pabpc1l9779.043Mastacembelus_armatus
ENSSFOG00015017304pabpc1l10079.206ENSMZEG00005023713pabpc1l10079.206Maylandia_zebra
ENSSFOG00015017304pabpc1l9977.724ENSMGAG00000003674PABPC1L9877.724Meleagris_gallopavo
ENSSFOG00015017304pabpc1l9963.462ENSMOCG00000013186Pabpc1l9963.462Microtus_ochrogaster
ENSSFOG00015017304pabpc1l9977.724ENSMMOG00000020574-9095.385Mola_mola
ENSSFOG00015017304pabpc1l9773.409ENSMODG00000016198PABPC1L9973.409Monodelphis_domestica
ENSSFOG00015017304pabpc1l9778.125ENSMALG00000021622pabpc1l10078.125Monopterus_albus
ENSSFOG00015017304pabpc1l9963.477MGP_CAROLIEiJ_G0024627Pabpc1l9963.477Mus_caroli
ENSSFOG00015017304pabpc1l9963.317ENSMUSG00000054582Pabpc1l9963.317Mus_musculus
ENSSFOG00015017304pabpc1l10063.349MGP_PahariEiJ_G0026071Pabpc1l10063.349Mus_pahari
ENSSFOG00015017304pabpc1l9963.477MGP_SPRETEiJ_G0025549Pabpc1l9963.477Mus_spretus
ENSSFOG00015017304pabpc1l9972.669ENSMPUG00000017646PABPC1L9972.669Mustela_putorius_furo
ENSSFOG00015017304pabpc1l9869.391ENSMLUG00000006324PABPC1L9869.391Myotis_lucifugus
ENSSFOG00015017304pabpc1l9964.904ENSNGAG00000010458Pabpc1l9964.904Nannospalax_galili
ENSSFOG00015017304pabpc1l9981.007ENSNBRG00000016633pabpc1l10080.822Neolamprologus_brichardi
ENSSFOG00015017304pabpc1l9963.884ENSMEUG00000007905-9963.884Notamacropus_eugenii
ENSSFOG00015017304pabpc1l9971.200ENSOPRG00000011846PABPC1L9971.200Ochotona_princeps
ENSSFOG00015017304pabpc1l9963.987ENSODEG00000015482PABPC1L9963.987Octodon_degus
ENSSFOG00015017304pabpc1l5781.250ENSODEG00000002920-9781.250Octodon_degus
ENSSFOG00015017304pabpc1l10079.365ENSONIG00000017314pabpc1l10079.365Oreochromis_niloticus
ENSSFOG00015017304pabpc1l9063.986ENSOANG00000015793-10063.763Ornithorhynchus_anatinus
ENSSFOG00015017304pabpc1l9967.026ENSOCUG00000003005PABPC1L9967.538Oryctolagus_cuniculus
ENSSFOG00015017304pabpc1l9980.420ENSORLG00000010322pabpc1l10080.420Oryzias_latipes
ENSSFOG00015017304pabpc1l9980.420ENSORLG00020021193pabpc1l10080.420Oryzias_latipes_hni
ENSSFOG00015017304pabpc1l9980.420ENSORLG00015017018pabpc1l10080.420Oryzias_latipes_hsok
ENSSFOG00015017304pabpc1l10074.507ENSOMEG00000010789pabpc1l10074.507Oryzias_melastigma
ENSSFOG00015017304pabpc1l9971.635ENSOGAG00000032999PABPC1L9971.635Otolemur_garnettii
ENSSFOG00015017304pabpc1l9972.097ENSOARG00000004578PABPC1L9972.097Ovis_aries
ENSSFOG00015017304pabpc1l9971.268ENSPPAG00000039677PABPC1L9971.635Pan_paniscus
ENSSFOG00015017304pabpc1l6271.296ENSPPRG00000019327-9871.296Panthera_pardus
ENSSFOG00015017304pabpc1l9872.846ENSPTIG00000006524PABPC1L9972.846Panthera_tigris_altaica
ENSSFOG00015017304pabpc1l6279.630ENSPTRG00000013531PABPC1L9879.630Pan_troglodytes
ENSSFOG00015017304pabpc1l9971.429ENSPANG00000018788PABPC1L9971.955Papio_anubis
ENSSFOG00015017304pabpc1l5283.969ENSPKIG00000016810-9283.969Paramormyrops_kingsleyae
ENSSFOG00015017304pabpc1l10088.160ENSPKIG00000007322pabpc1l10088.160Paramormyrops_kingsleyae
ENSSFOG00015017304pabpc1l6686.683ENSPSIG00000013289PABPC1L9886.683Pelodiscus_sinensis
ENSSFOG00015017304pabpc1l6294.697ENSPMGG00000023117pabpc1l9790.698Periophthalmus_magnuspinnatus
ENSSFOG00015017304pabpc1l6573.980ENSPMGG00000023121-9174.112Periophthalmus_magnuspinnatus
ENSSFOG00015017304pabpc1l9961.732ENSPEMG00000020671Pabpc1l9962.816Peromyscus_maniculatus_bairdii
ENSSFOG00015017304pabpc1l10080.000ENSPFOG00000013241pabpc1l10079.683Poecilia_formosa
ENSSFOG00015017304pabpc1l5296.923ENSPLAG00000023686-9296.923Poecilia_latipinna
ENSSFOG00015017304pabpc1l10079.841ENSPLAG00000017490-10079.841Poecilia_latipinna
ENSSFOG00015017304pabpc1l10079.618ENSPMEG00000007677pabpc1l10079.618Poecilia_mexicana
ENSSFOG00015017304pabpc1l5296.923ENSPMEG00000009185-8896.923Poecilia_mexicana
ENSSFOG00015017304pabpc1l6686.441ENSPREG00000015886pabpc1l9986.441Poecilia_reticulata
ENSSFOG00015017304pabpc1l9971.108ENSPPYG00000011042PABPC1L9971.635Pongo_abelii
ENSSFOG00015017304pabpc1l6087.500ENSPCAG00000011787-7587.500Procavia_capensis
ENSSFOG00015017304pabpc1l9971.176ENSPCOG00000020630PABPC1L9971.543Propithecus_coquereli
ENSSFOG00015017304pabpc1l9970.806ENSPVAG00000012663PABPC1L9970.806Pteropus_vampyrus
ENSSFOG00015017304pabpc1l9981.007ENSPNYG00000004101pabpc1l10080.822Pundamilia_nyererei
ENSSFOG00015017304pabpc1l10077.548ENSPNAG00000021248pabpc1l10077.548Pygocentrus_nattereri
ENSSFOG00015017304pabpc1l9962.839ENSRNOG00000012750Pabpc1l9963.175Rattus_norvegicus
ENSSFOG00015017304pabpc1l9971.589ENSRBIG00000035381PABPC1L9971.955Rhinopithecus_bieti
ENSSFOG00015017304pabpc1l9971.429ENSRROG00000044498PABPC1L9971.795Rhinopithecus_roxellana
ENSSFOG00015017304pabpc1l9970.833ENSSBOG00000009532-9970.833Saimiri_boliviensis_boliviensis
ENSSFOG00015017304pabpc1l9868.889ENSSHAG00000011446PABPC1L10068.889Sarcophilus_harrisii
ENSSFOG00015017304pabpc1l9984.459ENSSMAG00000010516pabpc1l9993.434Scophthalmus_maximus
ENSSFOG00015017304pabpc1l10078.254ENSSDUG00000014743pabpc1l10078.254Seriola_dumerili
ENSSFOG00015017304pabpc1l9777.521ENSSLDG00000006981pabpc1l9994.444Seriola_lalandi_dorsalis
ENSSFOG00015017304pabpc1l9978.365ENSSPUG00000004233PABPC1L9878.365Sphenodon_punctatus
ENSSFOG00015017304pabpc1l8781.166ENSSPAG00000017137pabpc1l9781.166Stegastes_partitus
ENSSFOG00015017304pabpc1l9972.303ENSSSCG00000007382PABPC1L9972.303Sus_scrofa
ENSSFOG00015017304pabpc1l9976.176ENSTGUG00000005114PABPC1L10076.176Taeniopygia_guttata
ENSSFOG00015017304pabpc1l9778.525ENSTRUG00000011085pabpc1l9778.525Takifugu_rubripes
ENSSFOG00015017304pabpc1l9976.160ENSTNIG00000017903pabpc1l9876.160Tetraodon_nigroviridis
ENSSFOG00015017304pabpc1l9481.164ENSTBEG00000002851PABPC1L7981.164Tupaia_belangeri
ENSSFOG00015017304pabpc1l9470.508ENSTTRG00000007618PABPC1L10070.627Tursiops_truncatus
ENSSFOG00015017304pabpc1l9970.257ENSUAMG00000017682PABPC1L9970.257Ursus_americanus
ENSSFOG00015017304pabpc1l6875.532ENSUMAG00000025436PABPC1L9475.532Ursus_maritimus
ENSSFOG00015017304pabpc1l9878.656ENSVVUG00000018939PABPC1L9978.656Vulpes_vulpes
ENSSFOG00015017304pabpc1l9974.157ENSXETG00000022831pabpc1l9874.157Xenopus_tropicalis
ENSSFOG00015017304pabpc1l10079.040ENSXCOG00000005459pabpc1l9992.199Xiphophorus_couchianus
ENSSFOG00015017304pabpc1l10079.048ENSXMAG00000017135pabpc1l10079.048Xiphophorus_maculatus

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