EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015018826 (Gene tree)
Gene ID: 108938123
Gene Symbol: snrnp200
Alias: fb63a09|si:ch211-251j10.5|wu:fb63a09
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 16019 bases
Position: chrKV411153.1:3024224-3040242
Accession: 108938123
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015029414	ResIII	PF04851.15	4.9e-24	1	2
ENSSFOP00015029414	ResIII	PF04851.15	4.9e-24	2	2
ENSSFOP00015029414	DEAD	PF00270.29	3.8e-51	1	2
ENSSFOP00015029414	DEAD	PF00270.29	3.8e-51	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015029750	-	6411	XM_018758469	ENSSFOP00015029414	2136 (aa)	XP_018613985	-

Gene Model

Click here to download ENSSFOG00015018826's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015018826's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015018826	snrnp200	73	30.759	ENSSFOG00015020129	hfm1	55	30.759
ENSSFOG00015018826	snrnp200	88	43.306	ENSSFOG00015010273	ascc3	89	43.454

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015018826	snrnp200	99	91.526	ENSG00000144028	SNRNP200	99	92.334	Homo_sapiens
ENSSFOG00015018826	snrnp200	99	95.489	ENSAPOG00000010223	snrnp200	99	95.489	Acanthochromis_polyacanthus
ENSSFOG00015018826	snrnp200	99	91.479	ENSAMEG00000008996	SNRNP200	99	91.592	Ailuropoda_melanoleuca
ENSSFOG00015018826	snrnp200	97	94.965	ENSACIG00000001764	snrnp200	98	94.965	Amphilophus_citrinellus
ENSSFOG00015018826	snrnp200	99	95.254	ENSAOCG00000024593	snrnp200	100	94.644	Amphiprion_ocellaris
ENSSFOG00015018826	snrnp200	97	94.697	ENSAPEG00000012554	snrnp200	100	94.697	Amphiprion_percula
ENSSFOG00015018826	snrnp200	99	95.442	ENSATEG00000022522	snrnp200	99	95.442	Anabas_testudineus
ENSSFOG00015018826	snrnp200	99	91.089	ENSAPLG00000004313	SNRNP200	99	91.154	Anas_platyrhynchos
ENSSFOG00015018826	snrnp200	99	90.396	ENSACAG00000000434	SNRNP200	100	90.396	Anolis_carolinensis
ENSSFOG00015018826	snrnp200	99	87.716	ENSANAG00000036625	SNRNP200	99	87.582	Aotus_nancymaae
ENSSFOG00015018826	snrnp200	99	95.113	ENSACLG00000011188	snrnp200	99	95.113	Astatotilapia_calliptera
ENSSFOG00015018826	snrnp200	99	94.878	ENSAMXG00000005684	snrnp200	99	94.878	Astyanax_mexicanus
ENSSFOG00015018826	snrnp200	99	91.245	ENSBTAG00000000848	SNRNP200	99	91.357	Bos_taurus
ENSSFOG00015018826	snrnp200	99	91.526	ENSCJAG00000007514	SNRNP200	99	91.639	Callithrix_jacchus
ENSSFOG00015018826	snrnp200	99	90.714	ENSCAFG00020019979	SNRNP200	99	92.384	Canis_lupus_dingo
ENSSFOG00015018826	snrnp200	99	91.199	ENSCHIG00000020611	SNRNP200	99	91.310	Capra_hircus
ENSSFOG00015018826	snrnp200	99	91.573	ENSTSYG00000010467	SNRNP200	99	91.686	Carlito_syrichta
ENSSFOG00015018826	snrnp200	99	91.114	ENSCAPG00000017234	SNRNP200	99	91.226	Cavia_aperea
ENSSFOG00015018826	snrnp200	99	91.433	ENSCPOG00000006776	SNRNP200	99	91.545	Cavia_porcellus
ENSSFOG00015018826	snrnp200	99	91.526	ENSCCAG00000033962	SNRNP200	99	91.639	Cebus_capucinus
ENSSFOG00015018826	snrnp200	99	91.526	ENSCATG00000015790	SNRNP200	99	91.639	Cercocebus_atys
ENSSFOG00015018826	snrnp200	99	91.386	ENSCLAG00000004116	SNRNP200	99	91.498	Chinchilla_lanigera
ENSSFOG00015018826	snrnp200	99	91.526	ENSCSAG00000017369	SNRNP200	99	91.639	Chlorocebus_sabaeus
ENSSFOG00015018826	snrnp200	73	96.063	ENSCHOG00000012981	-	58	96.063	Choloepus_hoffmanni
ENSSFOG00015018826	snrnp200	99	90.930	ENSCPBG00000022571	SNRNP200	99	95.000	Chrysemys_picta_bellii
ENSSFOG00015018826	snrnp200	99	75.828	ENSCING00000005082	-	99	76.159	Ciona_intestinalis
ENSSFOG00015018826	snrnp200	94	91.140	ENSCANG00000033932	SNRNP200	99	91.259	Colobus_angolensis_palliatus
ENSSFOG00015018826	snrnp200	99	91.620	ENSCGRG00001022610	Snrnp200	99	91.733	Cricetulus_griseus_chok1gshd
ENSSFOG00015018826	snrnp200	99	91.164	ENSCGRG00000016472	Snrnp200	99	91.276	Cricetulus_griseus_crigri
ENSSFOG00015018826	snrnp200	99	94.239	ENSCSEG00000016399	snrnp200	99	94.358	Cynoglossus_semilaevis
ENSSFOG00015018826	snrnp200	100	89.658	ENSCVAG00000017631	snrnp200	100	89.658	Cyprinodon_variegatus
ENSSFOG00015018826	snrnp200	100	94.291	ENSDARG00000077536	snrnp200	99	94.314	Danio_rerio
ENSSFOG00015018826	snrnp200	99	90.169	ENSDNOG00000011227	SNRNP200	99	90.277	Dasypus_novemcinctus
ENSSFOG00015018826	snrnp200	99	88.972	ENSDORG00000005861	Snrnp200	99	89.076	Dipodomys_ordii
ENSSFOG00015018826	snrnp200	100	73.709	FBgn0263599	l(3)72Ab	99	73.889	Drosophila_melanogaster
ENSSFOG00015018826	snrnp200	95	90.353	ENSETEG00000000162	SNRNP200	74	90.353	Echinops_telfairi
ENSSFOG00015018826	snrnp200	78	80.448	ENSEBUG00000016524	snrnp200	95	80.448	Eptatretus_burgeri
ENSSFOG00015018826	snrnp200	99	90.396	ENSEASG00005001884	SNRNP200	99	90.412	Equus_asinus_asinus
ENSSFOG00015018826	snrnp200	99	91.479	ENSECAG00000019675	SNRNP200	99	91.592	Equus_caballus
ENSSFOG00015018826	snrnp200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSSFOG00015018826	snrnp200	99	95.959	ENSELUG00000018948	snrnp200	99	95.959	Esox_lucius
ENSSFOG00015018826	snrnp200	99	91.526	ENSFCAG00000010699	SNRNP200	99	91.639	Felis_catus
ENSSFOG00015018826	snrnp200	93	89.286	ENSFALG00000001368	-	94	89.286	Ficedula_albicollis
ENSSFOG00015018826	snrnp200	99	91.386	ENSFDAG00000004683	SNRNP200	99	91.498	Fukomys_damarensis
ENSSFOG00015018826	snrnp200	100	91.858	ENSFHEG00000003786	snrnp200	99	91.917	Fundulus_heteroclitus
ENSSFOG00015018826	snrnp200	100	94.068	ENSGMOG00000004881	snrnp200	99	94.090	Gadus_morhua
ENSSFOG00015018826	snrnp200	100	92.232	ENSGAFG00000010807	snrnp200	99	92.293	Gambusia_affinis
ENSSFOG00015018826	snrnp200	100	94.818	ENSGACG00000011474	snrnp200	99	94.890	Gasterosteus_aculeatus
ENSSFOG00015018826	snrnp200	95	93.373	ENSGAGG00000016069	SNRNP200	95	96.552	Gopherus_agassizii
ENSSFOG00015018826	snrnp200	99	91.526	ENSGGOG00000005174	SNRNP200	99	91.639	Gorilla_gorilla
ENSSFOG00015018826	snrnp200	97	92.472	ENSHBUG00000011322	snrnp200	99	92.472	Haplochromis_burtoni
ENSSFOG00015018826	snrnp200	99	91.433	ENSHGLG00000006654	SNRNP200	99	91.545	Heterocephalus_glaber_female
ENSSFOG00015018826	snrnp200	99	91.433	ENSHGLG00100018594	SNRNP200	99	91.545	Heterocephalus_glaber_male
ENSSFOG00015018826	snrnp200	99	91.573	ENSSTOG00000016351	SNRNP200	99	91.686	Ictidomys_tridecemlineatus
ENSSFOG00015018826	snrnp200	99	91.339	ENSJJAG00000023659	Snrnp200	99	91.451	Jaculus_jaculus
ENSSFOG00015018826	snrnp200	100	92.211	ENSKMAG00000003665	snrnp200	99	92.272	Kryptolebias_marmoratus
ENSSFOG00015018826	snrnp200	100	95.040	ENSLBEG00000021585	snrnp200	99	95.066	Labrus_bergylta
ENSSFOG00015018826	snrnp200	82	92.034	ENSLACG00000000226	SNRNP200	99	92.166	Latimeria_chalumnae
ENSSFOG00015018826	snrnp200	100	94.855	ENSLOCG00000015198	snrnp200	99	94.880	Lepisosteus_oculatus
ENSSFOG00015018826	snrnp200	99	91.386	ENSLAFG00000015626	SNRNP200	99	91.498	Loxodonta_africana
ENSSFOG00015018826	snrnp200	99	91.479	ENSMFAG00000040174	SNRNP200	99	93.023	Macaca_fascicularis
ENSSFOG00015018826	snrnp200	99	91.479	ENSMMUG00000023261	SNRNP200	99	91.592	Macaca_mulatta
ENSSFOG00015018826	snrnp200	99	91.433	ENSMNEG00000032398	SNRNP200	99	91.545	Macaca_nemestrina
ENSSFOG00015018826	snrnp200	99	91.526	ENSMLEG00000019083	SNRNP200	99	93.023	Mandrillus_leucophaeus
ENSSFOG00015018826	snrnp200	100	94.902	ENSMAMG00000007851	snrnp200	99	94.927	Mastacembelus_armatus
ENSSFOG00015018826	snrnp200	97	92.472	ENSMZEG00005010787	snrnp200	99	92.472	Maylandia_zebra
ENSSFOG00015018826	snrnp200	97	90.614	ENSMGAG00000001831	SNRNP200	99	90.754	Meleagris_gallopavo
ENSSFOG00015018826	snrnp200	99	91.620	ENSMAUG00000011825	Snrnp200	99	91.733	Mesocricetus_auratus
ENSSFOG00015018826	snrnp200	99	91.479	ENSMICG00000004710	SNRNP200	98	92.676	Microcebus_murinus
ENSSFOG00015018826	snrnp200	99	89.747	ENSMOCG00000011814	Snrnp200	99	89.854	Microtus_ochrogaster
ENSSFOG00015018826	snrnp200	99	93.609	ENSMMOG00000014167	snrnp200	99	93.609	Mola_mola
ENSSFOG00015018826	snrnp200	99	91.339	ENSMODG00000008475	SNRNP200	99	91.404	Monodelphis_domestica
ENSSFOG00015018826	snrnp200	99	95.254	ENSMALG00000001973	snrnp200	99	95.254	Monopterus_albus
ENSSFOG00015018826	snrnp200	99	91.479	MGP_CAROLIEiJ_G0024250	Snrnp200	99	91.592	Mus_caroli
ENSSFOG00015018826	snrnp200	99	91.526	ENSMUSG00000003660	Snrnp200	99	91.639	Mus_musculus
ENSSFOG00015018826	snrnp200	99	91.526	MGP_PahariEiJ_G0025695	Snrnp200	99	91.639	Mus_pahari
ENSSFOG00015018826	snrnp200	99	91.526	MGP_SPRETEiJ_G0025170	Snrnp200	99	94.648	Mus_spretus
ENSSFOG00015018826	snrnp200	99	91.433	ENSMPUG00000008949	SNRNP200	99	91.545	Mustela_putorius_furo
ENSSFOG00015018826	snrnp200	99	91.024	ENSMLUG00000010493	SNRNP200	99	91.135	Myotis_lucifugus
ENSSFOG00015018826	snrnp200	99	88.109	ENSMLUG00000027511	-	99	88.210	Myotis_lucifugus
ENSSFOG00015018826	snrnp200	99	91.573	ENSNGAG00000021993	Snrnp200	99	91.686	Nannospalax_galili
ENSSFOG00015018826	snrnp200	90	95.012	ENSNBRG00000017960	snrnp200	98	95.012	Neolamprologus_brichardi
ENSSFOG00015018826	snrnp200	99	87.122	ENSNLEG00000000025	SNRNP200	99	87.407	Nomascus_leucogenys
ENSSFOG00015018826	snrnp200	99	94.845	ENSMEUG00000010532	SNRNP200	78	95.918	Notamacropus_eugenii
ENSSFOG00015018826	snrnp200	96	90.272	ENSOPRG00000015464	SNRNP200	99	88.163	Ochotona_princeps
ENSSFOG00015018826	snrnp200	99	91.339	ENSODEG00000008366	SNRNP200	99	91.451	Octodon_degus
ENSSFOG00015018826	snrnp200	99	95.019	ENSONIG00000010714	snrnp200	99	95.019	Oreochromis_niloticus
ENSSFOG00015018826	snrnp200	99	91.479	ENSOCUG00000009864	SNRNP200	99	91.592	Oryctolagus_cuniculus
ENSSFOG00015018826	snrnp200	99	93.724	ENSORLG00000012286	snrnp200	99	93.750	Oryzias_latipes
ENSSFOG00015018826	snrnp200	99	93.724	ENSORLG00020004648	snrnp200	99	93.750	Oryzias_latipes_hni
ENSSFOG00015018826	snrnp200	99	93.770	ENSORLG00015019114	snrnp200	99	93.797	Oryzias_latipes_hsok
ENSSFOG00015018826	snrnp200	99	94.126	ENSOMEG00000011834	snrnp200	99	94.126	Oryzias_melastigma
ENSSFOG00015018826	snrnp200	99	91.573	ENSOGAG00000006879	SNRNP200	99	91.686	Otolemur_garnettii
ENSSFOG00015018826	snrnp200	99	90.407	ENSOARG00000013949	SNRNP200	99	90.516	Ovis_aries
ENSSFOG00015018826	snrnp200	99	91.526	ENSPPAG00000041559	SNRNP200	99	91.639	Pan_paniscus
ENSSFOG00015018826	snrnp200	99	91.526	ENSPPRG00000004435	SNRNP200	99	91.639	Panthera_pardus
ENSSFOG00015018826	snrnp200	99	91.105	ENSPTIG00000006380	SNRNP200	99	91.217	Panthera_tigris_altaica
ENSSFOG00015018826	snrnp200	99	91.526	ENSPTRG00000012230	SNRNP200	99	91.639	Pan_troglodytes
ENSSFOG00015018826	snrnp200	99	91.479	ENSPANG00000006017	SNRNP200	99	91.592	Papio_anubis
ENSSFOG00015018826	snrnp200	100	96.537	ENSPKIG00000014762	snrnp200	100	96.543	Paramormyrops_kingsleyae
ENSSFOG00015018826	snrnp200	99	90.080	ENSPSIG00000008580	SNRNP200	99	90.141	Pelodiscus_sinensis
ENSSFOG00015018826	snrnp200	99	91.199	ENSPCIG00000023050	SNRNP200	99	91.264	Phascolarctos_cinereus
ENSSFOG00015018826	snrnp200	100	94.341	ENSPFOG00000015110	snrnp200	99	94.411	Poecilia_formosa
ENSSFOG00015018826	snrnp200	97	94.502	ENSPLAG00000006711	snrnp200	99	94.502	Poecilia_latipinna
ENSSFOG00015018826	snrnp200	97	94.447	ENSPMEG00000021166	snrnp200	99	94.447	Poecilia_mexicana
ENSSFOG00015018826	snrnp200	100	94.572	ENSPREG00000008875	snrnp200	99	94.643	Poecilia_reticulata
ENSSFOG00015018826	snrnp200	99	91.526	ENSPPYG00000012068	SNRNP200	99	91.639	Pongo_abelii
ENSSFOG00015018826	snrnp200	95	93.590	ENSPCAG00000008536	SNRNP200	85	97.917	Procavia_capensis
ENSSFOG00015018826	snrnp200	99	91.526	ENSPCOG00000024608	SNRNP200	99	91.639	Propithecus_coquereli
ENSSFOG00015018826	snrnp200	96	92.016	ENSPVAG00000005860	SNRNP200	92	92.268	Pteropus_vampyrus
ENSSFOG00015018826	snrnp200	99	90.394	ENSPNYG00000017476	snrnp200	99	90.394	Pundamilia_nyererei
ENSSFOG00015018826	snrnp200	100	90.781	ENSPNAG00000010998	snrnp200	99	90.836	Pygocentrus_nattereri
ENSSFOG00015018826	snrnp200	99	91.620	ENSRNOG00000012157	Snrnp200	99	91.733	Rattus_norvegicus
ENSSFOG00015018826	snrnp200	99	91.526	ENSRBIG00000044690	-	99	91.639	Rhinopithecus_bieti
ENSSFOG00015018826	snrnp200	99	91.526	ENSRROG00000037952	-	99	91.639	Rhinopithecus_roxellana
ENSSFOG00015018826	snrnp200	99	91.526	ENSSBOG00000035471	SNRNP200	99	91.639	Saimiri_boliviensis_boliviensis
ENSSFOG00015018826	snrnp200	97	90.953	ENSSHAG00000000758	SNRNP200	99	91.046	Sarcophilus_harrisii
ENSSFOG00015018826	snrnp200	99	95.019	ENSSMAG00000005463	snrnp200	99	95.072	Scophthalmus_maximus
ENSSFOG00015018826	snrnp200	99	95.583	ENSSDUG00000021410	snrnp200	99	95.583	Seriola_dumerili
ENSSFOG00015018826	snrnp200	99	95.536	ENSSLDG00000010884	snrnp200	99	95.536	Seriola_lalandi_dorsalis
ENSSFOG00015018826	snrnp200	95	90.080	ENSSARG00000010728	SNRNP200	96	90.054	Sorex_araneus
ENSSFOG00015018826	snrnp200	99	91.245	ENSSPUG00000003726	-	99	91.310	Sphenodon_punctatus
ENSSFOG00015018826	snrnp200	99	95.489	ENSSPAG00000001842	snrnp200	99	95.489	Stegastes_partitus
ENSSFOG00015018826	snrnp200	99	91.526	ENSSSCG00000008127	SNRNP200	99	91.639	Sus_scrofa
ENSSFOG00015018826	snrnp200	99	83.262	ENSTGUG00000014475	-	100	83.262	Taeniopygia_guttata
ENSSFOG00015018826	snrnp200	99	94.737	ENSTRUG00000001307	snrnp200	99	94.737	Takifugu_rubripes
ENSSFOG00015018826	snrnp200	99	89.946	ENSTNIG00000004320	snrnp200	99	83.075	Tetraodon_nigroviridis
ENSSFOG00015018826	snrnp200	82	94.366	ENSTBEG00000003329	-	67	94.366	Tupaia_belangeri
ENSSFOG00015018826	snrnp200	99	91.292	ENSTTRG00000004983	SNRNP200	99	91.404	Tursiops_truncatus
ENSSFOG00015018826	snrnp200	75	83.527	ENSUAMG00000008395	-	95	83.527	Ursus_americanus
ENSSFOG00015018826	snrnp200	99	91.526	ENSUMAG00000012385	SNRNP200	99	91.639	Ursus_maritimus
ENSSFOG00015018826	snrnp200	87	96.429	ENSVPAG00000006434	SNRNP200	66	96.429	Vicugna_pacos
ENSSFOG00015018826	snrnp200	99	91.312	ENSVVUG00000026247	SNRNP200	99	91.425	Vulpes_vulpes
ENSSFOG00015018826	snrnp200	99	90.739	ENSXETG00000001243	snrnp200	99	90.802	Xenopus_tropicalis
ENSSFOG00015018826	snrnp200	97	94.751	ENSXMAG00000002058	snrnp200	98	94.751	Xiphophorus_maculatus