EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015019150 (Gene tree)
Gene ID: 108927837
Gene Symbol: snrpc
Alias: U1C|chunp6909|zgc:109792
Full Name: U1 small nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 3520 bases
Position: chrKV410875.1:465406-468925
Accession: 108927837
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015029791	zf-U1	PF06220.12	1.4e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015030130	-	635	XM_018741416	ENSSFOP00015029791	159 (aa)	XP_018596932	A0A1W4YZE9

Gene Model

Click here to download ENSSFOG00015019150's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015019150's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015019150	snrpc	58	85.870	ENSSFOG00015022422	snrpc	60	85.106

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015019150	snrpc	100	81.132	ENSG00000124562	SNRPC	100	81.132	Homo_sapiens
ENSSFOG00015019150	snrpc	100	79.245	ENSAMEG00000000963	SNRPC	87	80.255	Ailuropoda_melanoleuca
ENSSFOG00015019150	snrpc	100	57.862	ENSANAG00000021444	-	59	65.591	Aotus_nancymaae
ENSSFOG00015019150	snrpc	100	74.214	ENSANAG00000019726	-	58	81.915	Aotus_nancymaae
ENSSFOG00015019150	snrpc	99	74.051	ENSANAG00000020588	-	92	74.051	Aotus_nancymaae
ENSSFOG00015019150	snrpc	100	69.182	ENSANAG00000021026	-	100	62.264	Aotus_nancymaae
ENSSFOG00015019150	snrpc	100	81.132	ENSANAG00000019696	-	100	81.132	Aotus_nancymaae
ENSSFOG00015019150	snrpc	100	80.503	ENSANAG00000007843	-	100	80.503	Aotus_nancymaae
ENSSFOG00015019150	snrpc	100	80.000	ENSANAG00000019157	-	100	80.000	Aotus_nancymaae
ENSSFOG00015019150	snrpc	100	84.277	ENSAMXG00000032641	snrpc	100	75.000	Astyanax_mexicanus
ENSSFOG00015019150	snrpc	100	81.132	ENSBTAG00000024549	SNRPC	100	81.132	Bos_taurus
ENSSFOG00015019150	snrpc	100	80.503	ENSCJAG00000043055	-	100	80.503	Callithrix_jacchus
ENSSFOG00015019150	snrpc	100	81.132	ENSCJAG00000015321	-	100	81.132	Callithrix_jacchus
ENSSFOG00015019150	snrpc	100	60.366	ENSCAFG00000025525	-	50	78.750	Canis_familiaris
ENSSFOG00015019150	snrpc	100	79.245	ENSCAFG00000031775	-	100	79.245	Canis_familiaris
ENSSFOG00015019150	snrpc	99	71.975	ENSCAFG00020009944	-	53	73.913	Canis_lupus_dingo
ENSSFOG00015019150	snrpc	100	81.132	ENSCAFG00020005945	-	100	81.132	Canis_lupus_dingo
ENSSFOG00015019150	snrpc	100	79.245	ENSCAFG00020017383	-	100	79.245	Canis_lupus_dingo
ENSSFOG00015019150	snrpc	100	62.893	ENSCHIG00000005039	-	100	56.000	Capra_hircus
ENSSFOG00015019150	snrpc	100	80.503	ENSCHIG00000012087	-	100	80.503	Capra_hircus
ENSSFOG00015019150	snrpc	100	66.667	ENSTSYG00000025721	-	100	66.667	Carlito_syrichta
ENSSFOG00015019150	snrpc	100	81.132	ENSTSYG00000011216	-	100	81.132	Carlito_syrichta
ENSSFOG00015019150	snrpc	81	78.906	ENSTSYG00000029745	-	53	78.095	Carlito_syrichta
ENSSFOG00015019150	snrpc	89	78.873	ENSCAPG00000005161	SNRPC	100	78.873	Cavia_aperea
ENSSFOG00015019150	snrpc	100	81.132	ENSCPOG00000008563	SNRPC	100	81.132	Cavia_porcellus
ENSSFOG00015019150	snrpc	100	59.119	ENSCCAG00000028293	-	71	79.570	Cebus_capucinus
ENSSFOG00015019150	snrpc	98	60.897	ENSCCAG00000022209	-	95	60.897	Cebus_capucinus
ENSSFOG00015019150	snrpc	98	73.077	ENSCCAG00000022751	-	95	73.077	Cebus_capucinus
ENSSFOG00015019150	snrpc	100	76.101	ENSCCAG00000036059	-	53	78.723	Cebus_capucinus
ENSSFOG00015019150	snrpc	100	81.132	ENSCATG00000035787	SNRPC	100	81.132	Cercocebus_atys
ENSSFOG00015019150	snrpc	100	81.132	ENSCLAG00000016920	SNRPC	100	81.132	Chinchilla_lanigera
ENSSFOG00015019150	snrpc	99	68.790	ENSCLAG00000010242	-	60	72.727	Chinchilla_lanigera
ENSSFOG00015019150	snrpc	100	71.069	ENSCHOG00000011439	SNRPC	88	71.975	Choloepus_hoffmanni
ENSSFOG00015019150	snrpc	100	81.132	ENSCANG00000028035	SNRPC	100	81.132	Colobus_angolensis_palliatus
ENSSFOG00015019150	snrpc	100	70.440	ENSCGRG00001021483	-	100	70.440	Cricetulus_griseus_chok1gshd
ENSSFOG00015019150	snrpc	100	83.019	ENSDARG00000009871	snrpc	100	83.019	Danio_rerio
ENSSFOG00015019150	snrpc	50	87.500	ENSDNOG00000042403	-	69	90.000	Dasypus_novemcinctus
ENSSFOG00015019150	snrpc	100	80.503	ENSDNOG00000034699	-	99	80.503	Dasypus_novemcinctus
ENSSFOG00015019150	snrpc	95	64.238	ENSDORG00000029823	-	74	74.757	Dipodomys_ordii
ENSSFOG00015019150	snrpc	50	82.500	ENSETEG00000008756	-	77	85.000	Echinops_telfairi
ENSSFOG00015019150	snrpc	97	74.675	ENSETEG00000011265	-	60	74.468	Echinops_telfairi
ENSSFOG00015019150	snrpc	90	59.722	ENSEBUG00000011445	snrpc	53	58.065	Eptatretus_burgeri
ENSSFOG00015019150	snrpc	100	81.132	ENSEASG00005021007	SNRPC	100	81.132	Equus_asinus_asinus
ENSSFOG00015019150	snrpc	100	81.132	ENSECAG00000026848	SNRPC	100	81.132	Equus_caballus
ENSSFOG00015019150	snrpc	99	69.620	ENSEEUG00000014633	SNRPC	90	69.620	Erinaceus_europaeus
ENSSFOG00015019150	snrpc	100	77.914	ENSELUG00000020489	snrpc	59	85.106	Esox_lucius
ENSSFOG00015019150	snrpc	100	77.358	ENSELUG00000000815	SNRPC	60	89.362	Esox_lucius
ENSSFOG00015019150	snrpc	100	81.132	ENSFCAG00000044077	-	100	81.132	Felis_catus
ENSSFOG00015019150	snrpc	100	81.132	ENSFDAG00000018111	SNRPC	100	81.132	Fukomys_damarensis
ENSSFOG00015019150	snrpc	100	78.750	ENSGALG00000002773	SNRPC	100	78.750	Gallus_gallus
ENSSFOG00015019150	snrpc	100	81.132	ENSGGOG00000012499	SNRPC	100	81.132	Gorilla_gorilla
ENSSFOG00015019150	snrpc	100	71.069	ENSHGLG00000017741	-	100	72.327	Heterocephalus_glaber_female
ENSSFOG00015019150	snrpc	100	81.132	ENSHGLG00000013981	SNRPC	100	81.132	Heterocephalus_glaber_female
ENSSFOG00015019150	snrpc	81	60.938	ENSHGLG00000005871	-	65	72.043	Heterocephalus_glaber_female
ENSSFOG00015019150	snrpc	100	81.132	ENSHGLG00100009478	SNRPC	100	81.132	Heterocephalus_glaber_male
ENSSFOG00015019150	snrpc	100	71.069	ENSHGLG00100010786	-	100	72.327	Heterocephalus_glaber_male
ENSSFOG00015019150	snrpc	100	77.987	ENSHGLG00100017764	-	100	77.987	Heterocephalus_glaber_male
ENSSFOG00015019150	snrpc	100	83.648	ENSIPUG00000024851	snrpc	100	83.648	Ictalurus_punctatus
ENSSFOG00015019150	snrpc	100	81.132	ENSSTOG00000013786	SNRPC	100	81.132	Ictidomys_tridecemlineatus
ENSSFOG00015019150	snrpc	100	81.132	ENSLAFG00000013534	SNRPC	100	81.132	Loxodonta_africana
ENSSFOG00015019150	snrpc	100	80.503	ENSMFAG00000030525	-	100	80.503	Macaca_fascicularis
ENSSFOG00015019150	snrpc	100	81.132	ENSMFAG00000031764	-	100	81.132	Macaca_fascicularis
ENSSFOG00015019150	snrpc	100	79.874	ENSMMUG00000000869	-	95	80.769	Macaca_mulatta
ENSSFOG00015019150	snrpc	100	72.956	ENSMMUG00000045425	-	59	73.404	Macaca_mulatta
ENSSFOG00015019150	snrpc	100	79.874	ENSMMUG00000039415	-	100	79.874	Macaca_mulatta
ENSSFOG00015019150	snrpc	100	81.132	ENSMNEG00000032731	SNRPC	100	81.132	Macaca_nemestrina
ENSSFOG00015019150	snrpc	97	73.548	ENSMLEG00000040224	-	52	75.556	Mandrillus_leucophaeus
ENSSFOG00015019150	snrpc	100	81.132	ENSMLEG00000033916	-	100	81.132	Mandrillus_leucophaeus
ENSSFOG00015019150	snrpc	100	75.000	ENSMGAG00000006054	SNRPC	100	78.616	Meleagris_gallopavo
ENSSFOG00015019150	snrpc	100	81.761	ENSMICG00000007339	-	100	83.019	Microcebus_murinus
ENSSFOG00015019150	snrpc	98	66.026	ENSMICG00000036552	-	53	75.824	Microcebus_murinus
ENSSFOG00015019150	snrpc	100	80.503	ENSMICG00000032183	-	100	80.503	Microcebus_murinus
ENSSFOG00015019150	snrpc	100	64.375	ENSMALG00000001197	snrpc	57	80.851	Monopterus_albus
ENSSFOG00015019150	snrpc	90	78.322	ENSMUSG00000024217	Snrpc	100	81.132	Mus_musculus
ENSSFOG00015019150	snrpc	100	79.245	ENSMPUG00000003210	SNRPC	99	80.255	Mustela_putorius_furo
ENSSFOG00015019150	snrpc	100	79.245	ENSMLUG00000002488	SNRPC	99	80.255	Myotis_lucifugus
ENSSFOG00015019150	snrpc	100	81.132	ENSNLEG00000034810	SNRPC	100	81.132	Nomascus_leucogenys
ENSSFOG00015019150	snrpc	89	78.873	ENSMEUG00000009300	SNRPC	100	78.873	Notamacropus_eugenii
ENSSFOG00015019150	snrpc	100	81.132	ENSODEG00000020370	-	100	81.132	Octodon_degus
ENSSFOG00015019150	snrpc	61	77.320	ENSODEG00000006008	-	68	77.660	Octodon_degus
ENSSFOG00015019150	snrpc	100	81.132	ENSODEG00000018985	-	100	81.132	Octodon_degus
ENSSFOG00015019150	snrpc	100	81.132	ENSODEG00000017080	-	100	81.132	Octodon_degus
ENSSFOG00015019150	snrpc	100	80.503	ENSODEG00000020201	-	100	80.503	Octodon_degus
ENSSFOG00015019150	snrpc	90	76.190	ENSOANG00000003405	SNRPC	100	75.676	Ornithorhynchus_anatinus
ENSSFOG00015019150	snrpc	60	81.250	ENSOCUG00000023292	-	100	79.874	Oryctolagus_cuniculus
ENSSFOG00015019150	snrpc	100	81.132	ENSOCUG00000026668	-	100	81.132	Oryctolagus_cuniculus
ENSSFOG00015019150	snrpc	96	62.092	ENSOGAG00000028405	-	99	64.052	Otolemur_garnettii
ENSSFOG00015019150	snrpc	100	80.503	ENSOGAG00000026269	-	100	80.503	Otolemur_garnettii
ENSSFOG00015019150	snrpc	97	80.645	ENSOGAG00000008755	-	88	80.255	Otolemur_garnettii
ENSSFOG00015019150	snrpc	100	81.132	ENSOARG00000010823	SNRPC	100	81.132	Ovis_aries
ENSSFOG00015019150	snrpc	100	81.132	ENSPPAG00000043871	SNRPC	100	81.132	Pan_paniscus
ENSSFOG00015019150	snrpc	95	48.366	ENSPPRG00000016017	-	62	42.453	Panthera_pardus
ENSSFOG00015019150	snrpc	100	81.132	ENSPPRG00000008647	-	100	81.132	Panthera_pardus
ENSSFOG00015019150	snrpc	100	55.975	ENSPPRG00000010967	-	60	64.516	Panthera_pardus
ENSSFOG00015019150	snrpc	100	81.132	ENSPTIG00000021867	-	100	81.132	Panthera_tigris_altaica
ENSSFOG00015019150	snrpc	55	68.966	ENSPTIG00000013329	-	61	68.817	Panthera_tigris_altaica
ENSSFOG00015019150	snrpc	100	81.132	ENSPTRG00000018070	SNRPC	100	81.132	Pan_troglodytes
ENSSFOG00015019150	snrpc	100	71.698	ENSPANG00000018228	-	55	72.340	Papio_anubis
ENSSFOG00015019150	snrpc	100	81.132	ENSPANG00000022802	-	100	81.132	Papio_anubis
ENSSFOG00015019150	snrpc	100	79.245	ENSPKIG00000001671	SNRPC	100	79.245	Paramormyrops_kingsleyae
ENSSFOG00015019150	snrpc	59	87.234	ENSPKIG00000003136	snrpc	61	87.234	Paramormyrops_kingsleyae
ENSSFOG00015019150	snrpc	98	59.615	ENSPMGG00000022162	snrpc	56	79.121	Periophthalmus_magnuspinnatus
ENSSFOG00015019150	snrpc	100	71.698	ENSPEMG00000002763	-	100	71.069	Peromyscus_maniculatus_bairdii
ENSSFOG00015019150	snrpc	96	61.783	ENSPMAG00000000602	snrpc	59	73.118	Petromyzon_marinus
ENSSFOG00015019150	snrpc	50	87.500	ENSPPYG00000029902	-	80	90.000	Pongo_abelii
ENSSFOG00015019150	snrpc	100	79.245	ENSPCAG00000016885	SNRPC	90	80.255	Procavia_capensis
ENSSFOG00015019150	snrpc	100	81.132	ENSPCOG00000004904	SNRPC	100	81.132	Propithecus_coquereli
ENSSFOG00015019150	snrpc	100	78.616	ENSPVAG00000015597	SNRPC	87	79.618	Pteropus_vampyrus
ENSSFOG00015019150	snrpc	84	63.910	ENSPNYG00000004900	snrpc	53	80.303	Pundamilia_nyererei
ENSSFOG00015019150	snrpc	100	77.358	ENSPNAG00000012799	snrpc	100	77.358	Pygocentrus_nattereri
ENSSFOG00015019150	snrpc	100	81.132	ENSRBIG00000037567	-	100	81.132	Rhinopithecus_bieti
ENSSFOG00015019150	snrpc	100	81.132	ENSRROG00000041300	SNRPC	100	81.132	Rhinopithecus_roxellana
ENSSFOG00015019150	snrpc	100	81.132	ENSSBOG00000031528	-	100	81.132	Saimiri_boliviensis_boliviensis
ENSSFOG00015019150	snrpc	97	69.481	ENSSBOG00000023189	-	57	73.404	Saimiri_boliviensis_boliviensis
ENSSFOG00015019150	snrpc	98	67.949	ENSSBOG00000032882	-	93	66.667	Saimiri_boliviensis_boliviensis
ENSSFOG00015019150	snrpc	95	66.887	ENSSBOG00000032361	-	64	67.619	Saimiri_boliviensis_boliviensis
ENSSFOG00015019150	snrpc	100	81.132	ENSSSCG00000001531	SNRPC	100	81.132	Sus_scrofa
ENSSFOG00015019150	snrpc	100	62.893	ENSTRUG00000021651	snrpc	57	80.851	Takifugu_rubripes
ENSSFOG00015019150	snrpc	100	71.429	ENSTNIG00000018307	snrpc	60	79.167	Tetraodon_nigroviridis
ENSSFOG00015019150	snrpc	60	75.000	ENSTBEG00000015356	-	67	77.895	Tupaia_belangeri
ENSSFOG00015019150	snrpc	89	64.085	ENSTBEG00000016759	-	79	64.085	Tupaia_belangeri
ENSSFOG00015019150	snrpc	97	76.623	ENSTBEG00000013022	-	60	77.660	Tupaia_belangeri
ENSSFOG00015019150	snrpc	100	79.245	ENSTTRG00000007827	SNRPC	86	80.255	Tursiops_truncatus
ENSSFOG00015019150	snrpc	100	79.874	ENSVVUG00000021947	-	100	79.874	Vulpes_vulpes
ENSSFOG00015019150	snrpc	97	76.623	ENSVVUG00000010467	-	87	76.923	Vulpes_vulpes
ENSSFOG00015019150	snrpc	100	77.358	ENSXETG00000024721	snrpc	100	80.000	Xenopus_tropicalis