EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015019227 (Gene tree)
Gene ID: 108919136
Gene Symbol: rbm42
Alias: mgc10433l|zgc:109907
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 6453 bases
Position: chrKV411267.1:347547-353999
Accession: 108919136
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015029999	RRM_1	PF00076.22	9.5e-18	1	1
ENSSFOP00015029980	RRM_1	PF00076.22	1e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015030320	-	1239	XM_018726923	ENSSFOP00015029980	412 (aa)	XP_018582439	-
ENSSFOT00015030339	-	1230	-	ENSSFOP00015029999	409 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015019227's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015019227's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015019227	rbm42	100	72.471	ENSAPOG00000015109	rbm42	100	74.588	Acanthochromis_polyacanthus
ENSSFOG00015019227	rbm42	100	67.143	ENSACIG00000010771	rbm42	100	66.276	Amphilophus_citrinellus
ENSSFOG00015019227	rbm42	100	72.706	ENSAOCG00000008873	rbm42	100	72.897	Amphiprion_ocellaris
ENSSFOG00015019227	rbm42	100	72.706	ENSAPEG00000012051	rbm42	99	72.897	Amphiprion_percula
ENSSFOG00015019227	rbm42	100	70.353	ENSATEG00000000536	rbm42	100	70.353	Anabas_testudineus
ENSSFOG00015019227	rbm42	100	71.259	ENSACLG00000004988	rbm42	100	70.423	Astatotilapia_calliptera
ENSSFOG00015019227	rbm42	100	81.280	ENSAMXG00000016545	rbm42	100	80.569	Astyanax_mexicanus
ENSSFOG00015019227	rbm42	97	67.797	ENSCSEG00000010248	rbm42	100	66.905	Cynoglossus_semilaevis
ENSSFOG00015019227	rbm42	100	69.014	ENSCVAG00000015589	rbm42	100	69.718	Cyprinodon_variegatus
ENSSFOG00015019227	rbm42	100	75.000	ENSDARG00000039910	rbm42	100	76.259	Danio_rerio
ENSSFOG00015019227	rbm42	100	76.581	ENSELUG00000022403	rbm42	100	76.389	Esox_lucius
ENSSFOG00015019227	rbm42	54	78.571	ENSFHEG00000006764	rbm42	83	75.600	Fundulus_heteroclitus
ENSSFOG00015019227	rbm42	100	66.588	ENSGMOG00000012660	rbm42	100	67.217	Gadus_morhua
ENSSFOG00015019227	rbm42	76	69.592	ENSGAFG00000009059	rbm42	99	70.570	Gambusia_affinis
ENSSFOG00015019227	rbm42	100	69.031	ENSGACG00000004170	rbm42	100	69.194	Gasterosteus_aculeatus
ENSSFOG00015019227	rbm42	100	71.496	ENSHBUG00000011141	rbm42	100	70.657	Haplochromis_burtoni
ENSSFOG00015019227	rbm42	100	68.396	ENSHCOG00000021214	rbm42	100	67.436	Hippocampus_comes
ENSSFOG00015019227	rbm42	100	80.523	ENSIPUG00000022365	rbm42	99	79.097	Ictalurus_punctatus
ENSSFOG00015019227	rbm42	91	66.927	ENSKMAG00000015287	rbm42	99	64.796	Kryptolebias_marmoratus
ENSSFOG00015019227	rbm42	100	68.333	ENSLBEG00000017547	rbm42	100	69.767	Labrus_bergylta
ENSSFOG00015019227	rbm42	84	67.797	ENSLBEG00000004578	-	96	69.505	Labrus_bergylta
ENSSFOG00015019227	rbm42	100	76.960	ENSLOCG00000003368	rbm42	100	76.722	Lepisosteus_oculatus
ENSSFOG00015019227	rbm42	100	70.657	ENSMAMG00000006708	rbm42	100	72.066	Mastacembelus_armatus
ENSSFOG00015019227	rbm42	100	71.259	ENSMZEG00005025234	rbm42	100	70.423	Maylandia_zebra
ENSSFOG00015019227	rbm42	100	62.679	ENSMALG00000015720	rbm42	100	69.975	Monopterus_albus
ENSSFOG00015019227	rbm42	100	71.226	ENSONIG00000008029	rbm42	100	71.194	Oreochromis_niloticus
ENSSFOG00015019227	rbm42	100	57.241	ENSORLG00020022507	rbm42	100	56.944	Oryzias_latipes_hni
ENSSFOG00015019227	rbm42	100	71.429	ENSORLG00015000659	rbm42	100	67.757	Oryzias_latipes_hsok
ENSSFOG00015019227	rbm42	60	76.923	ENSOMEG00000014332	rbm42	91	76.923	Oryzias_melastigma
ENSSFOG00015019227	rbm42	100	86.364	ENSPKIG00000015165	rbm42	100	85.372	Paramormyrops_kingsleyae
ENSSFOG00015019227	rbm42	63	76.296	ENSPSIG00000013935	-	56	83.607	Pelodiscus_sinensis
ENSSFOG00015019227	rbm42	76	78.646	ENSPMGG00000003569	rbm42	100	95.714	Periophthalmus_magnuspinnatus
ENSSFOG00015019227	rbm42	53	56.757	ENSPMAG00000008633	rbm42	100	47.315	Petromyzon_marinus
ENSSFOG00015019227	rbm42	100	69.668	ENSPFOG00000007701	rbm42	100	71.090	Poecilia_formosa
ENSSFOG00015019227	rbm42	100	69.668	ENSPLAG00000009405	rbm42	100	71.090	Poecilia_latipinna
ENSSFOG00015019227	rbm42	100	69.431	ENSPMEG00000010375	rbm42	100	70.853	Poecilia_mexicana
ENSSFOG00015019227	rbm42	100	69.668	ENSPREG00000018102	rbm42	100	71.090	Poecilia_reticulata
ENSSFOG00015019227	rbm42	100	71.021	ENSPNYG00000014460	rbm42	100	70.188	Pundamilia_nyererei
ENSSFOG00015019227	rbm42	100	80.806	ENSPNAG00000009961	rbm42	100	80.806	Pygocentrus_nattereri
ENSSFOG00015019227	rbm42	100	69.087	ENSSMAG00000011935	rbm42	100	68.894	Scophthalmus_maximus
ENSSFOG00015019227	rbm42	100	70.726	ENSSDUG00000004033	rbm42	100	70.439	Seriola_dumerili
ENSSFOG00015019227	rbm42	100	64.678	ENSSLDG00000009918	rbm42	100	94.366	Seriola_lalandi_dorsalis
ENSSFOG00015019227	rbm42	100	72.986	ENSSPAG00000019871	rbm42	100	72.706	Stegastes_partitus
ENSSFOG00015019227	rbm42	100	64.471	ENSTRUG00000024586	-	76	64.941	Takifugu_rubripes
ENSSFOG00015019227	rbm42	99	58.991	ENSTNIG00000011669	rbm42	100	58.720	Tetraodon_nigroviridis
ENSSFOG00015019227	rbm42	100	54.831	ENSXETG00000017599	rbm42	100	55.457	Xenopus_tropicalis
ENSSFOG00015019227	rbm42	100	69.668	ENSXMAG00000012827	rbm42	100	71.090	Xiphophorus_maculatus