EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015019528 (Gene tree)
Gene ID: 108940362
Gene Symbol: lsm1
Alias: zgc:101136
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 3045 bases
Position: chrKV411208.1:2498728-2501772
Accession: 108940362
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015030429	LSM	PF01423.22	2.5e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015030776	-	1302	XM_018762477	ENSSFOP00015030429	133 (aa)	XP_018617993	A0A1W5AWH4

Gene Model

Click here to download ENSSFOG00015019528's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015019528's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015019528	lsm1	53	36.620	ENSSFOG00015004412	lsm8	74	36.620

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015019528	lsm1	100	91.729	ENSG00000175324	LSM1	100	91.729	Homo_sapiens
ENSSFOG00015019528	lsm1	100	86.466	ENSAPOG00000010833	lsm1	100	86.466	Acanthochromis_polyacanthus
ENSSFOG00015019528	lsm1	100	91.729	ENSAMEG00000011141	LSM1	100	91.729	Ailuropoda_melanoleuca
ENSSFOG00015019528	lsm1	58	93.506	ENSACIG00000019593	lsm1	64	93.506	Amphilophus_citrinellus
ENSSFOG00015019528	lsm1	100	86.466	ENSAOCG00000017997	-	100	86.466	Amphiprion_ocellaris
ENSSFOG00015019528	lsm1	100	86.466	ENSAOCG00000017096	lsm1	100	86.466	Amphiprion_ocellaris
ENSSFOG00015019528	lsm1	100	86.466	ENSAPEG00000011669	lsm1	100	86.466	Amphiprion_percula
ENSSFOG00015019528	lsm1	100	86.466	ENSATEG00000022266	lsm1	100	86.466	Anabas_testudineus
ENSSFOG00015019528	lsm1	100	91.729	ENSANAG00000027785	LSM1	100	91.729	Aotus_nancymaae
ENSSFOG00015019528	lsm1	100	86.466	ENSACLG00000011400	lsm1	100	86.466	Astatotilapia_calliptera
ENSSFOG00015019528	lsm1	100	83.459	ENSAMXG00000005441	lsm1	100	83.459	Astyanax_mexicanus
ENSSFOG00015019528	lsm1	100	90.977	ENSBTAG00000001612	LSM1	100	90.977	Bos_taurus
ENSSFOG00015019528	lsm1	70	59.140	WBGene00003076	lsm-1	73	59.140	Caenorhabditis_elegans
ENSSFOG00015019528	lsm1	100	90.977	ENSCJAG00000048015	LSM1	100	90.977	Callithrix_jacchus
ENSSFOG00015019528	lsm1	100	91.729	ENSCAFG00000006113	LSM1	100	91.729	Canis_familiaris
ENSSFOG00015019528	lsm1	100	91.729	ENSCAFG00020001822	LSM1	100	91.729	Canis_lupus_dingo
ENSSFOG00015019528	lsm1	100	91.729	ENSCHIG00000013194	LSM1	100	91.729	Capra_hircus
ENSSFOG00015019528	lsm1	100	91.729	ENSTSYG00000010394	LSM1	100	91.729	Carlito_syrichta
ENSSFOG00015019528	lsm1	100	91.729	ENSCPOG00000032671	LSM1	100	91.729	Cavia_porcellus
ENSSFOG00015019528	lsm1	100	91.729	ENSCCAG00000037171	LSM1	100	91.729	Cebus_capucinus
ENSSFOG00015019528	lsm1	100	91.729	ENSCATG00000020377	LSM1	100	91.729	Cercocebus_atys
ENSSFOG00015019528	lsm1	100	90.226	ENSCLAG00000001137	LSM1	100	90.226	Chinchilla_lanigera
ENSSFOG00015019528	lsm1	100	91.729	ENSCSAG00000015485	LSM1	100	91.729	Chlorocebus_sabaeus
ENSSFOG00015019528	lsm1	100	90.977	ENSCHOG00000006030	LSM1	100	90.977	Choloepus_hoffmanni
ENSSFOG00015019528	lsm1	95	83.465	ENSCPBG00000006569	LSM1	86	83.465	Chrysemys_picta_bellii
ENSSFOG00015019528	lsm1	99	68.182	ENSCING00000013536	-	99	68.182	Ciona_intestinalis
ENSSFOG00015019528	lsm1	100	91.729	ENSCANG00000019173	LSM1	100	91.729	Colobus_angolensis_palliatus
ENSSFOG00015019528	lsm1	80	76.577	ENSCGRG00001002259	-	97	76.577	Cricetulus_griseus_chok1gshd
ENSSFOG00015019528	lsm1	100	90.977	ENSCGRG00001024560	-	100	90.977	Cricetulus_griseus_chok1gshd
ENSSFOG00015019528	lsm1	80	76.577	ENSCGRG00000013603	-	97	76.577	Cricetulus_griseus_crigri
ENSSFOG00015019528	lsm1	100	90.977	ENSCGRG00000006554	-	100	90.977	Cricetulus_griseus_crigri
ENSSFOG00015019528	lsm1	100	84.962	ENSCSEG00000008319	lsm1	92	84.962	Cynoglossus_semilaevis
ENSSFOG00015019528	lsm1	100	85.714	ENSCSEG00000010570	lsm1	92	85.714	Cynoglossus_semilaevis
ENSSFOG00015019528	lsm1	100	84.962	ENSCVAG00000003871	lsm1	100	84.962	Cyprinodon_variegatus
ENSSFOG00015019528	lsm1	100	82.707	ENSDARG00000043177	lsm1	100	82.707	Danio_rerio
ENSSFOG00015019528	lsm1	100	91.729	ENSDNOG00000046387	-	100	91.729	Dasypus_novemcinctus
ENSSFOG00015019528	lsm1	100	85.714	ENSDNOG00000030989	-	100	85.714	Dasypus_novemcinctus
ENSSFOG00015019528	lsm1	100	90.977	ENSDNOG00000032911	-	100	90.977	Dasypus_novemcinctus
ENSSFOG00015019528	lsm1	89	72.269	ENSDNOG00000046620	-	100	72.269	Dasypus_novemcinctus
ENSSFOG00015019528	lsm1	100	91.729	ENSDORG00000028172	Lsm1	100	91.729	Dipodomys_ordii
ENSSFOG00015019528	lsm1	93	62.903	FBgn0261067	LSm1	91	62.903	Drosophila_melanogaster
ENSSFOG00015019528	lsm1	100	90.226	ENSEASG00005016677	LSM1	100	90.226	Equus_asinus_asinus
ENSSFOG00015019528	lsm1	100	90.226	ENSECAG00000010461	LSM1	100	90.226	Equus_caballus
ENSSFOG00015019528	lsm1	72	83.333	ENSEEUG00000015181	LSM1	97	83.333	Erinaceus_europaeus
ENSSFOG00015019528	lsm1	100	88.722	ENSELUG00000002322	lsm1	100	88.722	Esox_lucius
ENSSFOG00015019528	lsm1	100	85.714	ENSELUG00000023374	lsm1	100	85.714	Esox_lucius
ENSSFOG00015019528	lsm1	100	91.729	ENSFCAG00000039335	LSM1	100	91.729	Felis_catus
ENSSFOG00015019528	lsm1	89	88.983	ENSFALG00000006723	LSM1	100	88.983	Ficedula_albicollis
ENSSFOG00015019528	lsm1	100	91.729	ENSFDAG00000007658	LSM1	100	91.729	Fukomys_damarensis
ENSSFOG00015019528	lsm1	100	84.962	ENSFHEG00000009556	lsm1	100	84.962	Fundulus_heteroclitus
ENSSFOG00015019528	lsm1	100	85.714	ENSGMOG00000016651	lsm1	98	85.714	Gadus_morhua
ENSSFOG00015019528	lsm1	100	88.722	ENSGALG00000003245	LSM1	100	88.722	Gallus_gallus
ENSSFOG00015019528	lsm1	100	84.962	ENSGAFG00000011355	lsm1	100	84.962	Gambusia_affinis
ENSSFOG00015019528	lsm1	100	86.466	ENSGACG00000011763	lsm1	98	86.466	Gasterosteus_aculeatus
ENSSFOG00015019528	lsm1	100	90.226	ENSGAGG00000024065	LSM1	100	90.226	Gopherus_agassizii
ENSSFOG00015019528	lsm1	100	91.729	ENSGGOG00000022658	LSM1	100	91.729	Gorilla_gorilla
ENSSFOG00015019528	lsm1	100	86.466	ENSHBUG00000010897	lsm1	100	86.466	Haplochromis_burtoni
ENSSFOG00015019528	lsm1	100	91.729	ENSHGLG00000005711	LSM1	100	91.729	Heterocephalus_glaber_female
ENSSFOG00015019528	lsm1	100	72.932	ENSHGLG00000017574	-	100	72.932	Heterocephalus_glaber_female
ENSSFOG00015019528	lsm1	100	72.932	ENSHGLG00100012152	-	100	72.932	Heterocephalus_glaber_male
ENSSFOG00015019528	lsm1	100	91.729	ENSHGLG00100017660	LSM1	100	91.729	Heterocephalus_glaber_male
ENSSFOG00015019528	lsm1	100	84.211	ENSHCOG00000017233	lsm1	100	84.211	Hippocampus_comes
ENSSFOG00015019528	lsm1	100	81.203	ENSIPUG00000002312	LSM1	100	81.203	Ictalurus_punctatus
ENSSFOG00015019528	lsm1	58	98.701	ENSSTOG00000026870	LSM1	94	98.701	Ictidomys_tridecemlineatus
ENSSFOG00015019528	lsm1	100	90.977	ENSJJAG00000014605	-	100	90.977	Jaculus_jaculus
ENSSFOG00015019528	lsm1	100	86.466	ENSKMAG00000003016	lsm1	100	86.466	Kryptolebias_marmoratus
ENSSFOG00015019528	lsm1	100	85.714	ENSLBEG00000022352	lsm1	100	85.714	Labrus_bergylta
ENSSFOG00015019528	lsm1	89	88.983	ENSLACG00000010947	LSM1	98	88.983	Latimeria_chalumnae
ENSSFOG00015019528	lsm1	100	93.985	ENSLOCG00000015149	lsm1	100	93.985	Lepisosteus_oculatus
ENSSFOG00015019528	lsm1	100	91.729	ENSLAFG00000003534	LSM1	100	91.729	Loxodonta_africana
ENSSFOG00015019528	lsm1	100	91.729	ENSMFAG00000032661	LSM1	100	91.729	Macaca_fascicularis
ENSSFOG00015019528	lsm1	100	91.729	ENSMLEG00000034535	LSM1	100	91.729	Mandrillus_leucophaeus
ENSSFOG00015019528	lsm1	100	85.714	ENSMAMG00000007464	lsm1	100	85.714	Mastacembelus_armatus
ENSSFOG00015019528	lsm1	100	86.466	ENSMZEG00005010321	lsm1	100	86.466	Maylandia_zebra
ENSSFOG00015019528	lsm1	100	88.722	ENSMGAG00000002125	LSM1	100	88.722	Meleagris_gallopavo
ENSSFOG00015019528	lsm1	100	90.977	ENSMICG00000030726	LSM1	100	90.977	Microcebus_murinus
ENSSFOG00015019528	lsm1	100	90.977	ENSMOCG00000022817	Lsm1	100	90.977	Microtus_ochrogaster
ENSSFOG00015019528	lsm1	100	86.466	ENSMMOG00000015466	lsm1	100	86.466	Mola_mola
ENSSFOG00015019528	lsm1	100	90.977	ENSMODG00000010732	-	100	90.977	Monodelphis_domestica
ENSSFOG00015019528	lsm1	58	93.506	ENSMALG00000001478	lsm1	82	93.506	Monopterus_albus
ENSSFOG00015019528	lsm1	100	90.977	MGP_CAROLIEiJ_G0030930	Lsm1	100	90.977	Mus_caroli
ENSSFOG00015019528	lsm1	100	90.977	ENSMUSG00000037296	Lsm1	100	90.977	Mus_musculus
ENSSFOG00015019528	lsm1	100	90.977	MGP_PahariEiJ_G0021400	Lsm1	100	90.977	Mus_pahari
ENSSFOG00015019528	lsm1	100	90.977	MGP_SPRETEiJ_G0032049	Lsm1	100	90.977	Mus_spretus
ENSSFOG00015019528	lsm1	100	92.481	ENSMPUG00000009883	LSM1	100	92.481	Mustela_putorius_furo
ENSSFOG00015019528	lsm1	100	90.977	ENSMLUG00000003734	LSM1	100	90.977	Myotis_lucifugus
ENSSFOG00015019528	lsm1	100	90.977	ENSNGAG00000003753	Lsm1	100	90.977	Nannospalax_galili
ENSSFOG00015019528	lsm1	58	93.506	ENSNBRG00000017370	lsm1	66	93.506	Neolamprologus_brichardi
ENSSFOG00015019528	lsm1	100	91.729	ENSNLEG00000029390	LSM1	100	91.729	Nomascus_leucogenys
ENSSFOG00015019528	lsm1	100	90.977	ENSMEUG00000014077	LSM1	100	90.977	Notamacropus_eugenii
ENSSFOG00015019528	lsm1	88	86.325	ENSOPRG00000000333	LSM1	100	86.325	Ochotona_princeps
ENSSFOG00015019528	lsm1	100	91.729	ENSODEG00000004834	LSM1	100	91.729	Octodon_degus
ENSSFOG00015019528	lsm1	100	86.466	ENSONIG00000010782	lsm1	100	86.466	Oreochromis_niloticus
ENSSFOG00015019528	lsm1	100	90.226	ENSOANG00000003256	LSM1	100	90.226	Ornithorhynchus_anatinus
ENSSFOG00015019528	lsm1	100	91.729	ENSOCUG00000015399	LSM1	100	91.729	Oryctolagus_cuniculus
ENSSFOG00015019528	lsm1	100	87.970	ENSORLG00000030288	lsm1	100	87.970	Oryzias_latipes
ENSSFOG00015019528	lsm1	100	86.466	ENSORLG00020006213	-	86	86.466	Oryzias_latipes_hni
ENSSFOG00015019528	lsm1	100	87.970	ENSORLG00020003941	lsm1	100	87.970	Oryzias_latipes_hni
ENSSFOG00015019528	lsm1	100	87.970	ENSORLG00015018350	lsm1	100	87.970	Oryzias_latipes_hsok
ENSSFOG00015019528	lsm1	100	86.466	ENSOMEG00000012454	lsm1	100	86.466	Oryzias_melastigma
ENSSFOG00015019528	lsm1	100	91.729	ENSOGAG00000015161	LSM1	100	91.729	Otolemur_garnettii
ENSSFOG00015019528	lsm1	100	91.729	ENSOARG00000001317	LSM1	100	91.729	Ovis_aries
ENSSFOG00015019528	lsm1	100	91.729	ENSPPAG00000032279	LSM1	100	91.729	Pan_paniscus
ENSSFOG00015019528	lsm1	100	91.729	ENSPPRG00000014172	-	100	91.729	Panthera_pardus
ENSSFOG00015019528	lsm1	100	91.729	ENSPTIG00000010289	LSM1	100	91.729	Panthera_tigris_altaica
ENSSFOG00015019528	lsm1	100	91.729	ENSPTRG00000020169	LSM1	100	91.729	Pan_troglodytes
ENSSFOG00015019528	lsm1	100	91.729	ENSPANG00000008814	LSM1	100	91.729	Papio_anubis
ENSSFOG00015019528	lsm1	100	96.241	ENSPKIG00000001839	lsm1	100	96.241	Paramormyrops_kingsleyae
ENSSFOG00015019528	lsm1	100	83.459	ENSPKIG00000019409	LSM1	99	83.459	Paramormyrops_kingsleyae
ENSSFOG00015019528	lsm1	98	83.846	ENSPSIG00000012563	LSM1	99	83.846	Pelodiscus_sinensis
ENSSFOG00015019528	lsm1	58	93.506	ENSPMGG00000022999	lsm1	73	93.506	Periophthalmus_magnuspinnatus
ENSSFOG00015019528	lsm1	85	78.761	ENSPMAG00000002671	lsm1	100	78.761	Petromyzon_marinus
ENSSFOG00015019528	lsm1	100	90.977	ENSPCIG00000008880	LSM1	100	90.977	Phascolarctos_cinereus
ENSSFOG00015019528	lsm1	100	84.962	ENSPFOG00000016029	lsm1	100	84.962	Poecilia_formosa
ENSSFOG00015019528	lsm1	100	84.962	ENSPLAG00000007879	lsm1	100	84.962	Poecilia_latipinna
ENSSFOG00015019528	lsm1	100	84.962	ENSPMEG00000023550	lsm1	100	84.962	Poecilia_mexicana
ENSSFOG00015019528	lsm1	100	84.962	ENSPREG00000009574	lsm1	100	84.962	Poecilia_reticulata
ENSSFOG00015019528	lsm1	100	91.729	ENSPPYG00000018521	LSM1	100	91.729	Pongo_abelii
ENSSFOG00015019528	lsm1	100	91.729	ENSPCOG00000020901	-	100	91.729	Propithecus_coquereli
ENSSFOG00015019528	lsm1	100	91.729	ENSPVAG00000006016	LSM1	100	91.729	Pteropus_vampyrus
ENSSFOG00015019528	lsm1	100	86.466	ENSPNYG00000018067	lsm1	100	86.466	Pundamilia_nyererei
ENSSFOG00015019528	lsm1	100	82.707	ENSPNAG00000013707	lsm1	100	82.707	Pygocentrus_nattereri
ENSSFOG00015019528	lsm1	100	90.226	ENSRNOG00000015375	Lsm1	100	90.226	Rattus_norvegicus
ENSSFOG00015019528	lsm1	100	91.729	ENSRBIG00000027449	LSM1	100	91.729	Rhinopithecus_bieti
ENSSFOG00015019528	lsm1	100	91.729	ENSRROG00000036074	LSM1	100	91.729	Rhinopithecus_roxellana
ENSSFOG00015019528	lsm1	83	42.241	YJL124C	LSM1	67	42.241	Saccharomyces_cerevisiae
ENSSFOG00015019528	lsm1	100	90.977	ENSSHAG00000017260	LSM1	100	90.977	Sarcophilus_harrisii
ENSSFOG00015019528	lsm1	100	86.466	ENSSMAG00000004930	lsm1	100	86.466	Scophthalmus_maximus
ENSSFOG00015019528	lsm1	100	86.466	ENSSDUG00000021823	lsm1	100	86.466	Seriola_dumerili
ENSSFOG00015019528	lsm1	100	86.466	ENSSLDG00000012154	lsm1	100	86.466	Seriola_lalandi_dorsalis
ENSSFOG00015019528	lsm1	100	90.226	ENSSPUG00000014878	LSM1	100	90.226	Sphenodon_punctatus
ENSSFOG00015019528	lsm1	100	85.714	ENSSPAG00000020548	lsm1	100	85.714	Stegastes_partitus
ENSSFOG00015019528	lsm1	100	91.729	ENSSSCG00000039058	LSM1	100	91.729	Sus_scrofa
ENSSFOG00015019528	lsm1	100	89.474	ENSTGUG00000004793	LSM1	100	89.474	Taeniopygia_guttata
ENSSFOG00015019528	lsm1	100	86.466	ENSTRUG00000025239	lsm1	100	86.466	Takifugu_rubripes
ENSSFOG00015019528	lsm1	100	85.714	ENSTNIG00000004055	lsm1	100	85.714	Tetraodon_nigroviridis
ENSSFOG00015019528	lsm1	88	88.034	ENSTBEG00000015884	LSM1	100	88.034	Tupaia_belangeri
ENSSFOG00015019528	lsm1	100	91.729	ENSTTRG00000004482	LSM1	100	91.729	Tursiops_truncatus
ENSSFOG00015019528	lsm1	100	91.729	ENSUAMG00000004103	LSM1	100	91.729	Ursus_americanus
ENSSFOG00015019528	lsm1	100	91.729	ENSUMAG00000009132	LSM1	100	91.729	Ursus_maritimus
ENSSFOG00015019528	lsm1	58	97.403	ENSVPAG00000011593	LSM1	100	97.403	Vicugna_pacos
ENSSFOG00015019528	lsm1	100	91.729	ENSVVUG00000020191	LSM1	100	91.729	Vulpes_vulpes
ENSSFOG00015019528	lsm1	61	71.605	ENSVVUG00000014880	-	86	71.605	Vulpes_vulpes
ENSSFOG00015019528	lsm1	100	86.131	ENSXETG00000009004	lsm1	100	86.131	Xenopus_tropicalis
ENSSFOG00015019528	lsm1	100	84.211	ENSXCOG00000015631	lsm1	100	84.211	Xiphophorus_couchianus
ENSSFOG00015019528	lsm1	100	84.211	ENSXMAG00000026637	lsm1	100	84.211	Xiphophorus_maculatus