EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSFOG00015019619 (Gene tree)
Gene ID
108942372
Gene Symbol
puf60b
Alias
fe37c05|si:ch211-12p8.2|si:zc12p8.2|wu:fb33e11|wu:fe37c05|zgc:86806
Full Name
poly(U)-binding-splicing factor PUF60-like
Gene Type
protein_coding
Species
Scleropages_formosus
Status
putative
Strand
Plus strand
Length
13354 bases
Position
chrKV411245.1:528905-542258
Accession
108942372
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSFOP00015030945RRM_1PF00076.221e-4512
ENSSFOP00015030945RRM_1PF00076.221e-4522
ENSSFOP00015030912RRM_1PF00076.221.1e-4512
ENSSFOP00015030912RRM_1PF00076.221.1e-4522
ENSSFOP00015030907RRM_1PF00076.221.3e-4512
ENSSFOP00015030907RRM_1PF00076.221.3e-4522
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSFOT00015031256-1527XM_018765695ENSSFOP00015030907508 (aa)XP_018621211-
ENSSFOT00015031294-1428-ENSSFOP00015030945475 (aa)--
ENSSFOT00015031261-1476-ENSSFOP00015030912491 (aa)--
Gene Model
Click here to download ENSSFOG00015019619's gene model file
Pathways
Pathway IDPathway NameSource
sfm03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015019619's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSFOG00015019619puf60b5434.328ENSSFOG00015006642-7234.328
ENSSFOG00015019619puf60b6737.255ENSSFOG00015003884-8937.255
ENSSFOG00015019619puf60b5930.769ENSSFOG00015008776tia17030.769
ENSSFOG00015019619puf60b9985.913ENSSFOG00015019371puf60a9986.922
ENSSFOG00015019619puf60b6136.275ENSSFOG00015019182u2af2b6838.235
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSFOG00015019619puf60b9986.235ENSG00000179950PUF609686.235Homo_sapiens
ENSSFOG00015019619puf60b9985.976ENSAPOG00000001713puf60b9882.852Acanthochromis_polyacanthus
ENSSFOG00015019619puf60b9984.211ENSAMEG00000006406PUF609280.228Ailuropoda_melanoleuca
ENSSFOG00015019619puf60b9976.471ENSACIG00000003263-9975.203Amphilophus_citrinellus
ENSSFOG00015019619puf60b9985.366ENSACIG00000021705puf60b10082.659Amphilophus_citrinellus
ENSSFOG00015019619puf60b9981.288ENSAOCG00000015558-9482.424Amphiprion_ocellaris
ENSSFOG00015019619puf60b9985.976ENSAOCG00000005395puf60b10082.852Amphiprion_ocellaris
ENSSFOG00015019619puf60b10078.543ENSAPEG00000001836-9977.888Amphiprion_percula
ENSSFOG00015019619puf60b10080.237ENSAPEG00000011923puf60b9779.880Amphiprion_percula
ENSSFOG00015019619puf60b9982.281ENSATEG00000006303-9879.537Anabas_testudineus
ENSSFOG00015019619puf60b9986.179ENSATEG00000001730puf60b9883.430Anabas_testudineus
ENSSFOG00015019619puf60b9986.437ENSAPLG00000010150PUF609983.048Anas_platyrhynchos
ENSSFOG00015019619puf60b9985.312ENSACAG00000001645PUF609681.818Anolis_carolinensis
ENSSFOG00015019619puf60b9986.032ENSANAG00000018626PUF609686.032Aotus_nancymaae
ENSSFOG00015019619puf60b9985.366ENSACLG00000004462puf60b10082.659Astatotilapia_calliptera
ENSSFOG00015019619puf60b9980.754ENSAMXG00000041030puf60b10081.574Astyanax_mexicanus
ENSSFOG00015019619puf60b9984.095ENSAMXG00000036570puf60a9782.609Astyanax_mexicanus
ENSSFOG00015019619puf60b9986.437ENSBTAG00000037493PUF609882.510Bos_taurus
ENSSFOG00015019619puf60b8251.408WBGene00004389rnp-68354.196Caenorhabditis_elegans
ENSSFOG00015019619puf60b9986.235ENSCJAG00000021485PUF609386.235Callithrix_jacchus
ENSSFOG00015019619puf60b9986.032ENSCAFG00000001400PUF608886.032Canis_familiaris
ENSSFOG00015019619puf60b9986.437ENSCAFG00020018754PUF609386.437Canis_lupus_dingo
ENSSFOG00015019619puf60b9986.437ENSCHIG00000001618PUF608682.510Capra_hircus
ENSSFOG00015019619puf60b9986.437ENSTSYG00000011912PUF609686.437Carlito_syrichta
ENSSFOG00015019619puf60b9981.124ENSCPOG00000014613PUF609377.358Cavia_porcellus
ENSSFOG00015019619puf60b9986.235ENSCCAG00000007744PUF609386.235Cebus_capucinus
ENSSFOG00015019619puf60b9986.235ENSCATG00000035405PUF609386.235Cercocebus_atys
ENSSFOG00015019619puf60b9986.437ENSCLAG00000009154PUF608886.437Chinchilla_lanigera
ENSSFOG00015019619puf60b9986.235ENSCSAG00000008878PUF609686.235Chlorocebus_sabaeus
ENSSFOG00015019619puf60b9986.437ENSCPBG00000005595PUF609782.857Chrysemys_picta_bellii
ENSSFOG00015019619puf60b6361.180ENSCING00000002156-8761.180Ciona_intestinalis
ENSSFOG00015019619puf60b9947.942ENSCING00000008436-9547.441Ciona_intestinalis
ENSSFOG00015019619puf60b9948.017ENSCSAVG00000004765-9748.958Ciona_savignyi
ENSSFOG00015019619puf60b9854.118ENSCSAVG00000001385-9954.896Ciona_savignyi
ENSSFOG00015019619puf60b8085.496ENSCANG00000041843PUF609485.496Colobus_angolensis_palliatus
ENSSFOG00015019619puf60b9986.235ENSCGRG00001017442Puf609183.238Cricetulus_griseus_chok1gshd
ENSSFOG00015019619puf60b9986.235ENSCGRG00000003717Puf609283.238Cricetulus_griseus_crigri
ENSSFOG00015019619puf60b9985.976ENSCSEG00000019887puf60b9183.430Cynoglossus_semilaevis
ENSSFOG00015019619puf60b10072.421ENSCSEG00000014845-8974.603Cynoglossus_semilaevis
ENSSFOG00015019619puf60b9985.976ENSCVAG00000009386puf60b10083.237Cyprinodon_variegatus
ENSSFOG00015019619puf60b9480.942ENSCVAG00000001560-9881.370Cyprinodon_variegatus
ENSSFOG00015019619puf60b9985.571ENSDARG00000032175puf60a9992.766Danio_rerio
ENSSFOG00015019619puf60b10081.609ENSDARG00000001241puf60b9998.413Danio_rerio
ENSSFOG00015019619puf60b9873.061ENSDNOG00000043278PUF608773.061Dasypus_novemcinctus
ENSSFOG00015019619puf60b9986.437ENSDORG00000004585Puf609482.510Dipodomys_ordii
ENSSFOG00015019619puf60b8265.441FBgn0028577hfp9949.174Drosophila_melanogaster
ENSSFOG00015019619puf60b10057.895ENSEBUG00000014291puf60b8460.633Eptatretus_burgeri
ENSSFOG00015019619puf60b9967.641ENSEBUG00000005470-8867.288Eptatretus_burgeri
ENSSFOG00015019619puf60b9986.437ENSEASG00005009695PUF609386.437Equus_asinus_asinus
ENSSFOG00015019619puf60b9986.437ENSECAG00000024681PUF609286.437Equus_caballus
ENSSFOG00015019619puf60b9982.897ENSELUG00000006507puf60b9976.673Esox_lucius
ENSSFOG00015019619puf60b9985.885ENSELUG00000018443-9983.597Esox_lucius
ENSSFOG00015019619puf60b9986.437ENSFCAG00000001045PUF609686.437Felis_catus
ENSSFOG00015019619puf60b9975.560ENSFALG00000001136PUF609773.194Ficedula_albicollis
ENSSFOG00015019619puf60b9986.235ENSFDAG00000017177PUF608886.235Fukomys_damarensis
ENSSFOG00015019619puf60b9985.772ENSFHEG00000020046puf60b10083.044Fundulus_heteroclitus
ENSSFOG00015019619puf60b9881.314ENSFHEG00000021687PUF6010081.743Fundulus_heteroclitus
ENSSFOG00015019619puf60b9970.437ENSGMOG00000006392puf60b9969.084Gadus_morhua
ENSSFOG00015019619puf60b6791.837ENSGALG00000039901PUF609491.837Gallus_gallus
ENSSFOG00015019619puf60b9985.772ENSGAFG00000021040puf60b10082.659Gambusia_affinis
ENSSFOG00015019619puf60b9984.342ENSGAFG00000004334-10083.750Gambusia_affinis
ENSSFOG00015019619puf60b9972.917ENSGACG00000001484-10070.793Gasterosteus_aculeatus
ENSSFOG00015019619puf60b9972.967ENSGACG00000004717puf60b9771.098Gasterosteus_aculeatus
ENSSFOG00015019619puf60b9986.437ENSGAGG00000013289PUF609182.857Gopherus_agassizii
ENSSFOG00015019619puf60b9986.235ENSGGOG00000004646PUF609386.235Gorilla_gorilla
ENSSFOG00015019619puf60b9982.222ENSHBUG00000009634-10079.134Haplochromis_burtoni
ENSSFOG00015019619puf60b9985.366ENSHBUG00000015118puf60b10082.659Haplochromis_burtoni
ENSSFOG00015019619puf60b9986.235ENSHGLG00000006111PUF608886.235Heterocephalus_glaber_female
ENSSFOG00015019619puf60b9986.235ENSHGLG00100012362PUF608886.235Heterocephalus_glaber_male
ENSSFOG00015019619puf60b9970.825ENSHCOG00000000378-9969.038Hippocampus_comes
ENSSFOG00015019619puf60b9980.502ENSHCOG00000015541puf60b9979.926Hippocampus_comes
ENSSFOG00015019619puf60b9983.000ENSIPUG00000002453puf60a9980.567Ictalurus_punctatus
ENSSFOG00015019619puf60b10083.109ENSIPUG00000004660puf60b9983.109Ictalurus_punctatus
ENSSFOG00015019619puf60b9986.437ENSSTOG00000025037PUF608986.437Ictidomys_tridecemlineatus
ENSSFOG00015019619puf60b9986.437ENSJJAG00000001076Puf609282.510Jaculus_jaculus
ENSSFOG00015019619puf60b9979.108ENSKMAG00000010106-10074.388Kryptolebias_marmoratus
ENSSFOG00015019619puf60b9985.425ENSKMAG00000016745puf60b10082.726Kryptolebias_marmoratus
ENSSFOG00015019619puf60b10087.013ENSLBEG00000012505puf60b10087.013Labrus_bergylta
ENSSFOG00015019619puf60b6982.421ENSLACG00000005456PUF609482.133Latimeria_chalumnae
ENSSFOG00015019619puf60b9988.798ENSLOCG00000010106puf60b9886.408Lepisosteus_oculatus
ENSSFOG00015019619puf60b9985.425ENSLAFG00000022929PUF608985.425Loxodonta_africana
ENSSFOG00015019619puf60b9986.235ENSMFAG00000043373PUF609882.129Macaca_fascicularis
ENSSFOG00015019619puf60b9986.235ENSMMUG00000013558PUF609386.235Macaca_mulatta
ENSSFOG00015019619puf60b9986.235ENSMNEG00000031099PUF609386.235Macaca_nemestrina
ENSSFOG00015019619puf60b9986.235ENSMLEG00000040009PUF609686.235Mandrillus_leucophaeus
ENSSFOG00015019619puf60b9985.772ENSMAMG00000010394puf60b10080.300Mastacembelus_armatus
ENSSFOG00015019619puf60b9982.520ENSMAMG00000019476-9879.087Mastacembelus_armatus
ENSSFOG00015019619puf60b9985.366ENSMZEG00005018515puf60b10082.659Maylandia_zebra
ENSSFOG00015019619puf60b9982.424ENSMZEG00005019425-9879.238Maylandia_zebra
ENSSFOG00015019619puf60b9986.437ENSMGAG00000013070PUF609592.151Meleagris_gallopavo
ENSSFOG00015019619puf60b9968.263ENSMAUG00000018549-9668.347Mesocricetus_auratus
ENSSFOG00015019619puf60b6992.012ENSMAUG00000014267-8891.944Mesocricetus_auratus
ENSSFOG00015019619puf60b9986.437ENSMICG00000012226PUF609486.437Microcebus_murinus
ENSSFOG00015019619puf60b9986.437ENSMOCG00000018780Puf609282.510Microtus_ochrogaster
ENSSFOG00015019619puf60b9985.628ENSMMOG00000004217puf60b10082.983Mola_mola
ENSSFOG00015019619puf60b9381.971ENSMMOG00000018059-9981.340Mola_mola
ENSSFOG00015019619puf60b9986.437ENSMODG00000009161PUF609382.510Monodelphis_domestica
ENSSFOG00015019619puf60b9977.846ENSMALG00000006797puf60b9775.530Monopterus_albus
ENSSFOG00015019619puf60b9981.136ENSMALG00000000200-9876.996Monopterus_albus
ENSSFOG00015019619puf60b9986.235MGP_CAROLIEiJ_G0019910Puf608886.235Mus_caroli
ENSSFOG00015019619puf60b9986.235ENSMUSG00000002524Puf608886.235Mus_musculus
ENSSFOG00015019619puf60b9986.235MGP_PahariEiJ_G0019920Puf608886.235Mus_pahari
ENSSFOG00015019619puf60b9986.235MGP_SPRETEiJ_G0020812Puf608886.235Mus_spretus
ENSSFOG00015019619puf60b9986.235ENSMPUG00000008137PUF608786.235Mustela_putorius_furo
ENSSFOG00015019619puf60b9986.789ENSMLUG00000000238-8886.789Myotis_lucifugus
ENSSFOG00015019619puf60b10078.937ENSMLUG00000013032-9779.167Myotis_lucifugus
ENSSFOG00015019619puf60b9986.437ENSNGAG00000000712Puf6010082.510Nannospalax_galili
ENSSFOG00015019619puf60b8084.910ENSNBRG00000013047puf60b8591.553Neolamprologus_brichardi
ENSSFOG00015019619puf60b9982.626ENSNBRG00000017223-9879.238Neolamprologus_brichardi
ENSSFOG00015019619puf60b9986.235ENSNLEG00000002156PUF609386.235Nomascus_leucogenys
ENSSFOG00015019619puf60b7696.679ENSOPRG00000002147PUF607295.668Ochotona_princeps
ENSSFOG00015019619puf60b7296.875ENSODEG00000014024-8996.875Octodon_degus
ENSSFOG00015019619puf60b9963.878ENSODEG00000015513-9760.381Octodon_degus
ENSSFOG00015019619puf60b9982.626ENSONIG00000014030-9779.238Oreochromis_niloticus
ENSSFOG00015019619puf60b9985.366ENSONIG00000006247puf60b9782.659Oreochromis_niloticus
ENSSFOG00015019619puf60b9669.538ENSOANG00000006962PUF609766.535Ornithorhynchus_anatinus
ENSSFOG00015019619puf60b9979.518ENSORLG00000028655-9977.439Oryzias_latipes
ENSSFOG00015019619puf60b9985.163ENSORLG00000012279puf60b10082.659Oryzias_latipes
ENSSFOG00015019619puf60b9985.163ENSORLG00020007333puf6010082.659Oryzias_latipes_hni
ENSSFOG00015019619puf60b9980.162ENSORLG00020018144-9777.055Oryzias_latipes_hni
ENSSFOG00015019619puf60b9980.162ENSORLG00015016833-9480.260Oryzias_latipes_hsok
ENSSFOG00015019619puf60b9984.818ENSORLG00015007718puf60b10082.534Oryzias_latipes_hsok
ENSSFOG00015019619puf60b9986.157ENSOMEG00000001643puf60b9986.820Oryzias_melastigma
ENSSFOG00015019619puf60b9981.136ENSOMEG00000022185-9777.672Oryzias_melastigma
ENSSFOG00015019619puf60b9986.437ENSOGAG00000006259PUF608886.437Otolemur_garnettii
ENSSFOG00015019619puf60b9984.521ENSOARG00000016235PUF609780.688Ovis_aries
ENSSFOG00015019619puf60b9986.235ENSPPAG00000029933PUF609386.235Pan_paniscus
ENSSFOG00015019619puf60b9986.437ENSPPRG00000003257PUF609686.437Panthera_pardus
ENSSFOG00015019619puf60b9984.008ENSPTIG00000009795PUF609880.038Panthera_tigris_altaica
ENSSFOG00015019619puf60b9986.032ENSPTRG00000043963-9386.032Pan_troglodytes
ENSSFOG00015019619puf60b9986.032ENSPTRG00000020670PUF609386.032Pan_troglodytes
ENSSFOG00015019619puf60b9986.235ENSPANG00000021936PUF609386.235Papio_anubis
ENSSFOG00015019619puf60b9989.817ENSPKIG00000012204puf60b10086.372Paramormyrops_kingsleyae
ENSSFOG00015019619puf60b9985.857ENSPKIG00000004295puf60a9993.433Paramormyrops_kingsleyae
ENSSFOG00015019619puf60b9986.032ENSPSIG00000004679PUF609882.667Pelodiscus_sinensis
ENSSFOG00015019619puf60b9984.073ENSPMGG00000013444puf60b9982.186Periophthalmus_magnuspinnatus
ENSSFOG00015019619puf60b9986.437ENSPEMG00000008820Puf609282.510Peromyscus_maniculatus_bairdii
ENSSFOG00015019619puf60b9986.437ENSPCIG00000020270PUF609486.437Phascolarctos_cinereus
ENSSFOG00015019619puf60b9985.772ENSPFOG00000019217puf60b9882.669Poecilia_formosa
ENSSFOG00015019619puf60b9981.744ENSPFOG00000011118-9778.286Poecilia_formosa
ENSSFOG00015019619puf60b9985.772ENSPLAG00000010754puf60b10083.044Poecilia_latipinna
ENSSFOG00015019619puf60b9981.542ENSPLAG00000017025-9077.714Poecilia_latipinna
ENSSFOG00015019619puf60b9981.744ENSPMEG00000009767-9078.286Poecilia_mexicana
ENSSFOG00015019619puf60b9985.772ENSPMEG00000000838puf60b10083.044Poecilia_mexicana
ENSSFOG00015019619puf60b9987.708ENSPREG00000005440puf60b9887.708Poecilia_reticulata
ENSSFOG00015019619puf60b8083.418ENSPPYG00000018951-9083.418Pongo_abelii
ENSSFOG00015019619puf60b8085.751ENSPCAG00000014837PUF609485.751Procavia_capensis
ENSSFOG00015019619puf60b9986.558ENSPCOG00000027981PUF609486.558Propithecus_coquereli
ENSSFOG00015019619puf60b9998.529ENSPVAG00000016167PUF608196.835Pteropus_vampyrus
ENSSFOG00015019619puf60b9985.366ENSPNYG00000002556puf60b10082.659Pundamilia_nyererei
ENSSFOG00015019619puf60b9982.424ENSPNYG00000004273-9879.238Pundamilia_nyererei
ENSSFOG00015019619puf60b10083.299ENSPNAG00000019415puf60b8983.299Pygocentrus_nattereri
ENSSFOG00015019619puf60b10081.569ENSPNAG00000019909puf60a9982.411Pygocentrus_nattereri
ENSSFOG00015019619puf60b9986.235ENSRNOG00000009960Puf609282.319Rattus_norvegicus
ENSSFOG00015019619puf60b9986.235ENSRBIG00000035274PUF609386.235Rhinopithecus_bieti
ENSSFOG00015019619puf60b9986.235ENSRROG00000029360PUF609486.235Rhinopithecus_roxellana
ENSSFOG00015019619puf60b9984.818ENSSBOG00000027089PUF609384.818Saimiri_boliviensis_boliviensis
ENSSFOG00015019619puf60b8885.068ENSSHAG00000006668PUF608585.068Sarcophilus_harrisii
ENSSFOG00015019619puf60b7494.946ENSSMAG00000016381puf60b7294.946Scophthalmus_maximus
ENSSFOG00015019619puf60b10087.037ENSSDUG00000009935puf60b10087.037Seriola_dumerili
ENSSFOG00015019619puf60b9879.716ENSSDUG00000007048-9777.308Seriola_dumerili
ENSSFOG00015019619puf60b9979.719ENSSLDG00000007366-9680.160Seriola_lalandi_dorsalis
ENSSFOG00015019619puf60b9986.179ENSSLDG00000024011puf60b10081.426Seriola_lalandi_dorsalis
ENSSFOG00015019619puf60b6679.941ENSSPUG00000013518PUF609280.606Sphenodon_punctatus
ENSSFOG00015019619puf60b9983.202ENSSPAG00000012144puf60b10081.238Stegastes_partitus
ENSSFOG00015019619puf60b9981.855ENSSPAG00000020285-10079.658Stegastes_partitus
ENSSFOG00015019619puf60b9986.437ENSSSCG00000038800PUF6010080.384Sus_scrofa
ENSSFOG00015019619puf60b9983.673ENSTGUG00000012797-9979.962Taeniopygia_guttata
ENSSFOG00015019619puf60b9984.168ENSTRUG00000005420puf60b10080.300Takifugu_rubripes
ENSSFOG00015019619puf60b9978.395ENSTRUG00000008843-10077.291Takifugu_rubripes
ENSSFOG00015019619puf60b9980.165ENSTNIG00000003069-9976.654Tetraodon_nigroviridis
ENSSFOG00015019619puf60b9984.959ENSTNIG00000013675puf60b9982.466Tetraodon_nigroviridis
ENSSFOG00015019619puf60b6588.660ENSTBEG00000002751-9788.660Tupaia_belangeri
ENSSFOG00015019619puf60b7966.957ENSTBEG00000001899-10067.826Tupaia_belangeri
ENSSFOG00015019619puf60b9985.223ENSTTRG00000017088PUF609685.425Tursiops_truncatus
ENSSFOG00015019619puf60b9986.437ENSUAMG00000024917PUF609386.437Ursus_americanus
ENSSFOG00015019619puf60b9983.878ENSUMAG00000000272PUF609282.205Ursus_maritimus
ENSSFOG00015019619puf60b9986.437ENSVVUG00000022527PUF609686.437Vulpes_vulpes
ENSSFOG00015019619puf60b9985.425ENSXETG00000012469puf609880.906Xenopus_tropicalis
ENSSFOG00015019619puf60b10082.609ENSXCOG00000012355puf60b10082.470Xiphophorus_couchianus
ENSSFOG00015019619puf60b9985.772ENSXMAG00000001862puf60b10083.044Xiphophorus_maculatus
ENSSFOG00015019619puf60b9979.346ENSXMAG00000010507-9878.175Xiphophorus_maculatus

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