EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015019643 (Gene tree)
Gene ID: 108920070
Gene Symbol: ptcd3
Alias: fa08d08|wu:fa08d08|zgc:123014
Full Name: pentatricopeptide repeat domain 3
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 10967 bases
Position: chrKV410804.1:4079412-4090378
Accession: 108920070
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015030650	PPR	PF01535.20	7.9e-06	1	1
ENSSFOP00015030617	PPR	PF01535.20	2.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015030998	-	2913	-	ENSSFOP00015030650	633 (aa)	-	-
ENSSFOT00015030965	-	2319	XM_018728556	ENSSFOP00015030617	681 (aa)	XP_018584072	A0A1W4Y740

Gene Model

Click here to download ENSSFOG00015019643's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015019643's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015019643	ptcd3	95	53.659	ENSACIG00000022263	ptcd3	99	53.429	Amphilophus_citrinellus
ENSSFOG00015019643	ptcd3	100	53.079	ENSAOCG00000017186	ptcd3	98	53.079	Amphiprion_ocellaris
ENSSFOG00015019643	ptcd3	100	53.079	ENSAPEG00000016069	ptcd3	98	53.079	Amphiprion_percula
ENSSFOG00015019643	ptcd3	94	48.087	ENSAPLG00000005086	PTCD3	97	48.087	Anas_platyrhynchos
ENSSFOG00015019643	ptcd3	99	54.948	ENSACLG00000020653	ptcd3	99	54.948	Astatotilapia_calliptera
ENSSFOG00015019643	ptcd3	97	56.796	ENSAMXG00000011570	ptcd3	99	54.706	Astyanax_mexicanus
ENSSFOG00015019643	ptcd3	96	55.829	ENSCVAG00000020820	ptcd3	99	55.161	Cyprinodon_variegatus
ENSSFOG00015019643	ptcd3	91	51.813	ENSGAFG00000015291	ptcd3	93	51.813	Gambusia_affinis
ENSSFOG00015019643	ptcd3	99	56.210	ENSHBUG00000020056	ptcd3	98	56.210	Haplochromis_burtoni
ENSSFOG00015019643	ptcd3	97	55.537	ENSLBEG00000015349	ptcd3	98	53.134	Labrus_bergylta
ENSSFOG00015019643	ptcd3	99	55.096	ENSMZEG00005004980	ptcd3	99	55.096	Maylandia_zebra
ENSSFOG00015019643	ptcd3	97	45.469	ENSMGAG00000013124	PTCD3	99	45.268	Meleagris_gallopavo
ENSSFOG00015019643	ptcd3	97	55.537	ENSMALG00000013282	ptcd3	95	54.391	Monopterus_albus
ENSSFOG00015019643	ptcd3	95	53.156	ENSNBRG00000000447	ptcd3	100	53.105	Neolamprologus_brichardi
ENSSFOG00015019643	ptcd3	97	57.423	ENSONIG00000015886	ptcd3	99	55.244	Oreochromis_niloticus
ENSSFOG00015019643	ptcd3	97	55.825	ENSORLG00000008776	ptcd3	100	54.858	Oryzias_latipes
ENSSFOG00015019643	ptcd3	97	55.987	ENSORLG00020020676	ptcd3	99	54.772	Oryzias_latipes_hni
ENSSFOG00015019643	ptcd3	93	45.098	ENSORLG00015015978	ptcd3	99	46.091	Oryzias_latipes_hsok
ENSSFOG00015019643	ptcd3	96	54.530	ENSPFOG00000004442	ptcd3	100	52.246	Poecilia_formosa
ENSSFOG00015019643	ptcd3	90	51.014	ENSPLAG00000021401	ptcd3	100	51.014	Poecilia_latipinna
ENSSFOG00015019643	ptcd3	95	50.500	ENSPMEG00000007153	ptcd3	100	50.500	Poecilia_mexicana
ENSSFOG00015019643	ptcd3	85	51.201	ENSTGUG00000010760	PTCD3	100	50.725	Taeniopygia_guttata
ENSSFOG00015019643	ptcd3	97	51.623	ENSTRUG00000003939	ptcd3	97	50.769	Takifugu_rubripes