EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015019716 (Gene tree)
Gene ID: 108921099
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 26722 bases
Position: chrKV410804.1:4090440-4117161
Accession: 108921099
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015030900	RNA_pol_Rpb1_5	PF04998.17	3.7e-99	1	1
ENSSFOP00015030829	RNA_pol_Rpb1_5	PF04998.17	4.3e-99	1	1
ENSSFOP00015030900	RNA_pol_Rpb1_4	PF05000.17	2.5e-21	1	1
ENSSFOP00015030829	RNA_pol_Rpb1_4	PF05000.17	2.5e-21	1	1
ENSSFOP00015030900	RNA_pol_Rpb1_2	PF00623.20	1.2e-69	1	1
ENSSFOP00015030829	RNA_pol_Rpb1_2	PF00623.20	1.2e-69	1	1
ENSSFOP00015030900	RNA_pol_Rpb1_3	PF04983.18	1.1e-38	1	1
ENSSFOP00015030829	RNA_pol_Rpb1_3	PF04983.18	1.1e-38	1	1
ENSSFOP00015030900	RNA_pol_Rpb1_1	PF04997.12	6.6e-25	1	1
ENSSFOP00015030829	RNA_pol_Rpb1_1	PF04997.12	8.1e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015031249	-	5016	-	ENSSFOP00015030900	1671 (aa)	-	-
ENSSFOT00015031178	-	5370	XM_018730395	ENSSFOP00015030829	1702 (aa)	XP_018585911	A0A1W4YC89

Gene Model

Click here to download ENSSFOG00015019716's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015019716's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015019716	polr1a	75	30.495	ENSSFOG00015023275	polr2a	54	35.838
ENSSFOG00015019716	polr1a	59	64.179	ENSSFOG00015014357	polr3a	68	64.179

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015019716	polr1a	100	67.400	ENSG00000068654	POLR1A	100	67.514	Homo_sapiens
ENSSFOG00015019716	polr1a	69	73.362	ENSAPOG00000017945	polr1a	99	73.702	Acanthochromis_polyacanthus
ENSSFOG00015019716	polr1a	100	67.984	ENSAMEG00000005807	POLR1A	100	73.156	Ailuropoda_melanoleuca
ENSSFOG00015019716	polr1a	96	72.835	ENSACIG00000022147	polr1a	100	73.128	Amphilophus_citrinellus
ENSSFOG00015019716	polr1a	100	70.722	ENSAOCG00000017336	polr1a	100	74.412	Amphiprion_ocellaris
ENSSFOG00015019716	polr1a	100	70.780	ENSAPEG00000016105	polr1a	100	71.220	Amphiprion_percula
ENSSFOG00015019716	polr1a	100	70.787	ENSATEG00000016773	polr1a	100	70.688	Anabas_testudineus
ENSSFOG00015019716	polr1a	86	68.784	ENSAPLG00000013871	POLR1A	99	69.319	Anas_platyrhynchos
ENSSFOG00015019716	polr1a	99	66.706	ENSACAG00000012141	POLR1A	99	66.511	Anolis_carolinensis
ENSSFOG00015019716	polr1a	100	67.054	ENSANAG00000033927	POLR1A	100	67.400	Aotus_nancymaae
ENSSFOG00015019716	polr1a	100	67.596	ENSACLG00000020541	polr1a	100	67.340	Astatotilapia_calliptera
ENSSFOG00015019716	polr1a	100	67.633	ENSBTAG00000006481	POLR1A	100	67.517	Bos_taurus
ENSSFOG00015019716	polr1a	98	41.661	WBGene00012999	rpoa-1	98	39.209	Caenorhabditis_elegans
ENSSFOG00015019716	polr1a	100	66.455	ENSCJAG00000019547	POLR1A	100	67.399	Callithrix_jacchus
ENSSFOG00015019716	polr1a	100	67.886	ENSCAFG00000007613	POLR1A	100	67.886	Canis_familiaris
ENSSFOG00015019716	polr1a	100	67.886	ENSCAFG00020014752	POLR1A	95	73.171	Canis_lupus_dingo
ENSSFOG00015019716	polr1a	100	67.853	ENSCHIG00000018204	POLR1A	100	67.503	Capra_hircus
ENSSFOG00015019716	polr1a	100	66.879	ENSTSYG00000002761	POLR1A	100	67.712	Carlito_syrichta
ENSSFOG00015019716	polr1a	97	65.000	ENSCAPG00000010132	POLR1A	100	64.940	Cavia_aperea
ENSSFOG00015019716	polr1a	100	67.930	ENSCPOG00000012350	POLR1A	100	67.872	Cavia_porcellus
ENSSFOG00015019716	polr1a	100	67.480	ENSCCAG00000019839	POLR1A	100	67.673	Cebus_capucinus
ENSSFOG00015019716	polr1a	100	67.070	ENSCATG00000029786	POLR1A	100	67.766	Cercocebus_atys
ENSSFOG00015019716	polr1a	100	66.705	ENSCLAG00000005187	POLR1A	100	67.283	Chinchilla_lanigera
ENSSFOG00015019716	polr1a	100	66.782	ENSCSAG00000016251	POLR1A	100	67.746	Chlorocebus_sabaeus
ENSSFOG00015019716	polr1a	99	70.392	ENSCPBG00000001115	POLR1A	99	70.334	Chrysemys_picta_bellii
ENSSFOG00015019716	polr1a	94	54.353	ENSCSAVG00000007184	-	97	55.769	Ciona_savignyi
ENSSFOG00015019716	polr1a	100	65.122	ENSCANG00000031785	POLR1A	100	65.107	Colobus_angolensis_palliatus
ENSSFOG00015019716	polr1a	96	70.111	ENSCGRG00001006651	Polr1a	100	70.111	Cricetulus_griseus_chok1gshd
ENSSFOG00015019716	polr1a	60	64.425	ENSCGRG00000010834	Polr1a	100	64.362	Cricetulus_griseus_crigri
ENSSFOG00015019716	polr1a	100	67.316	ENSCSEG00000020190	polr1a	100	67.257	Cynoglossus_semilaevis
ENSSFOG00015019716	polr1a	100	68.206	ENSCVAG00000020941	polr1a	82	70.563	Cyprinodon_variegatus
ENSSFOG00015019716	polr1a	100	71.890	ENSDARG00000098375	polr1a	100	71.829	Danio_rerio
ENSSFOG00015019716	polr1a	100	64.269	ENSDNOG00000010829	POLR1A	100	65.255	Dasypus_novemcinctus
ENSSFOG00015019716	polr1a	100	67.133	ENSDORG00000008298	Polr1a	100	66.938	Dipodomys_ordii
ENSSFOG00015019716	polr1a	79	43.764	FBgn0019938	RpI1	99	42.866	Drosophila_melanogaster
ENSSFOG00015019716	polr1a	72	87.500	ENSETEG00000000412	-	72	87.500	Echinops_telfairi
ENSSFOG00015019716	polr1a	89	48.915	ENSEBUG00000005667	-	93	64.341	Eptatretus_burgeri
ENSSFOG00015019716	polr1a	100	68.000	ENSEASG00005001625	POLR1A	100	67.942	Equus_asinus_asinus
ENSSFOG00015019716	polr1a	100	68.000	ENSECAG00000030510	-	100	72.774	Equus_caballus
ENSSFOG00015019716	polr1a	100	68.000	ENSECAG00000036306	-	100	72.774	Equus_caballus
ENSSFOG00015019716	polr1a	100	68.000	ENSECAG00000010092	POLR1A	100	72.774	Equus_caballus
ENSSFOG00015019716	polr1a	84	79.724	ENSEEUG00000000676	POLR1A	84	79.724	Erinaceus_europaeus
ENSSFOG00015019716	polr1a	100	74.898	ENSELUG00000012769	polr1a	99	74.505	Esox_lucius
ENSSFOG00015019716	polr1a	100	67.229	ENSFCAG00000008966	POLR1A	100	67.288	Felis_catus
ENSSFOG00015019716	polr1a	99	68.474	ENSFALG00000010082	POLR1A	99	68.107	Ficedula_albicollis
ENSSFOG00015019716	polr1a	100	67.572	ENSFDAG00000013726	POLR1A	100	67.733	Fukomys_damarensis
ENSSFOG00015019716	polr1a	100	67.118	ENSFHEG00000005996	polr1a	100	67.136	Fundulus_heteroclitus
ENSSFOG00015019716	polr1a	100	64.205	ENSGMOG00000002230	polr1a	100	64.695	Gadus_morhua
ENSSFOG00015019716	polr1a	90	65.176	ENSGALG00000038160	-	91	69.392	Gallus_gallus
ENSSFOG00015019716	polr1a	100	69.254	ENSGAFG00000015266	polr1a	100	68.754	Gambusia_affinis
ENSSFOG00015019716	polr1a	100	68.336	ENSGACG00000018791	polr1a	100	68.224	Gasterosteus_aculeatus
ENSSFOG00015019716	polr1a	89	70.125	ENSGAGG00000004984	-	95	77.436	Gopherus_agassizii
ENSSFOG00015019716	polr1a	100	67.458	ENSGGOG00000001788	POLR1A	100	67.572	Gorilla_gorilla
ENSSFOG00015019716	polr1a	91	70.603	ENSHBUG00000020021	polr1a	96	75.771	Haplochromis_burtoni
ENSSFOG00015019716	polr1a	100	67.949	ENSHGLG00000006334	POLR1A	100	68.026	Heterocephalus_glaber_female
ENSSFOG00015019716	polr1a	100	67.695	ENSHGLG00100006614	POLR1A	100	67.768	Heterocephalus_glaber_male
ENSSFOG00015019716	polr1a	100	68.012	ENSHCOG00000003345	polr1a	100	67.974	Hippocampus_comes
ENSSFOG00015019716	polr1a	100	73.003	ENSIPUG00000013174	polr1a	100	72.913	Ictalurus_punctatus
ENSSFOG00015019716	polr1a	99	66.221	ENSSTOG00000012580	POLR1A	100	66.299	Ictidomys_tridecemlineatus
ENSSFOG00015019716	polr1a	100	67.439	ENSJJAG00000013113	Polr1a	100	67.558	Jaculus_jaculus
ENSSFOG00015019716	polr1a	100	70.723	ENSKMAG00000007399	polr1a	100	70.307	Kryptolebias_marmoratus
ENSSFOG00015019716	polr1a	95	72.599	ENSLBEG00000015401	polr1a	99	73.479	Labrus_bergylta
ENSSFOG00015019716	polr1a	53	75.791	ENSLACG00000003218	polr1a	100	75.791	Latimeria_chalumnae
ENSSFOG00015019716	polr1a	100	75.713	ENSLOCG00000010881	polr1a	100	75.597	Lepisosteus_oculatus
ENSSFOG00015019716	polr1a	100	68.155	ENSLAFG00000014948	POLR1A	100	68.329	Loxodonta_africana
ENSSFOG00015019716	polr1a	100	67.478	ENSMFAG00000046097	POLR1A	100	67.805	Macaca_fascicularis
ENSSFOG00015019716	polr1a	100	67.362	ENSMMUG00000015815	POLR1A	100	67.690	Macaca_mulatta
ENSSFOG00015019716	polr1a	100	67.478	ENSMNEG00000043313	POLR1A	100	67.805	Macaca_nemestrina
ENSSFOG00015019716	polr1a	100	66.667	ENSMLEG00000042428	POLR1A	100	67.361	Mandrillus_leucophaeus
ENSSFOG00015019716	polr1a	100	70.355	ENSMAMG00000016565	polr1a	100	70.178	Mastacembelus_armatus
ENSSFOG00015019716	polr1a	100	71.278	ENSMZEG00005004915	polr1a	100	70.970	Maylandia_zebra
ENSSFOG00015019716	polr1a	99	65.135	ENSMGAG00000013111	POLR1A	99	65.145	Meleagris_gallopavo
ENSSFOG00015019716	polr1a	92	67.025	ENSMAUG00000008497	Polr1a	100	67.427	Mesocricetus_auratus
ENSSFOG00015019716	polr1a	100	67.205	ENSMICG00000000757	POLR1A	100	67.474	Microcebus_murinus
ENSSFOG00015019716	polr1a	100	67.596	ENSMOCG00000000122	Polr1a	100	67.770	Microtus_ochrogaster
ENSSFOG00015019716	polr1a	100	70.278	ENSMMOG00000010216	polr1a	100	70.337	Mola_mola
ENSSFOG00015019716	polr1a	100	65.043	ENSMODG00000009335	POLR1A	100	64.507	Monodelphis_domestica
ENSSFOG00015019716	polr1a	100	70.169	ENSMALG00000013363	polr1a	100	70.461	Monopterus_albus
ENSSFOG00015019716	polr1a	100	66.976	MGP_CAROLIEiJ_G0028494	Polr1a	100	67.151	Mus_caroli
ENSSFOG00015019716	polr1a	100	67.188	ENSMUSG00000049553	Polr1a	100	67.307	Mus_musculus
ENSSFOG00015019716	polr1a	100	67.187	MGP_PahariEiJ_G0022230	Polr1a	100	67.228	Mus_pahari
ENSSFOG00015019716	polr1a	100	66.420	MGP_SPRETEiJ_G0029499	Polr1a	100	60.215	Mus_spretus
ENSSFOG00015019716	polr1a	100	67.285	ENSMPUG00000009135	POLR1A	100	67.673	Mustela_putorius_furo
ENSSFOG00015019716	polr1a	100	67.553	ENSMLUG00000015723	POLR1A	100	68.208	Myotis_lucifugus
ENSSFOG00015019716	polr1a	100	67.111	ENSNGAG00000017907	Polr1a	100	67.673	Nannospalax_galili
ENSSFOG00015019716	polr1a	100	70.465	ENSNBRG00000000519	polr1a	100	70.722	Neolamprologus_brichardi
ENSSFOG00015019716	polr1a	100	65.215	ENSNLEG00000002264	POLR1A	100	65.726	Nomascus_leucogenys
ENSSFOG00015019716	polr1a	76	87.402	ENSMEUG00000011665	-	75	87.402	Notamacropus_eugenii
ENSSFOG00015019716	polr1a	99	63.615	ENSOPRG00000008269	POLR1A	100	63.556	Ochotona_princeps
ENSSFOG00015019716	polr1a	100	67.246	ENSODEG00000003542	POLR1A	100	67.793	Octodon_degus
ENSSFOG00015019716	polr1a	100	70.140	ENSONIG00000015895	polr1a	100	70.478	Oreochromis_niloticus
ENSSFOG00015019716	polr1a	100	68.743	ENSOCUG00000010138	POLR1A	100	68.837	Oryctolagus_cuniculus
ENSSFOG00015019716	polr1a	100	70.386	ENSORLG00000008753	polr1a	99	70.427	Oryzias_latipes
ENSSFOG00015019716	polr1a	100	68.061	ENSORLG00020020726	polr1a	99	67.943	Oryzias_latipes_hni
ENSSFOG00015019716	polr1a	95	80.851	ENSORLG00015016071	polr1a	99	80.851	Oryzias_latipes_hsok
ENSSFOG00015019716	polr1a	100	67.188	ENSOGAG00000004031	POLR1A	100	67.207	Otolemur_garnettii
ENSSFOG00015019716	polr1a	100	67.805	ENSOARG00000020601	POLR1A	100	67.690	Ovis_aries
ENSSFOG00015019716	polr1a	100	67.341	ENSPPAG00000042450	POLR1A	100	67.457	Pan_paniscus
ENSSFOG00015019716	polr1a	100	67.423	ENSPPRG00000006702	POLR1A	100	67.579	Panthera_pardus
ENSSFOG00015019716	polr1a	100	67.072	ENSPTIG00000018783	POLR1A	100	67.227	Panthera_tigris_altaica
ENSSFOG00015019716	polr1a	100	67.514	ENSPTRG00000012147	POLR1A	100	67.514	Pan_troglodytes
ENSSFOG00015019716	polr1a	100	66.897	ENSPANG00000025908	POLR1A	100	67.593	Papio_anubis
ENSSFOG00015019716	polr1a	100	79.603	ENSPKIG00000005468	polr1a	99	80.556	Paramormyrops_kingsleyae
ENSSFOG00015019716	polr1a	63	67.587	ENSPSIG00000009321	-	99	67.910	Pelodiscus_sinensis
ENSSFOG00015019716	polr1a	55	73.941	ENSPMGG00000009718	polr1a	95	73.724	Periophthalmus_magnuspinnatus
ENSSFOG00015019716	polr1a	100	67.538	ENSPEMG00000022224	Polr1a	100	67.635	Peromyscus_maniculatus_bairdii
ENSSFOG00015019716	polr1a	95	68.118	ENSPCIG00000004222	POLR1A	99	67.791	Phascolarctos_cinereus
ENSSFOG00015019716	polr1a	100	69.271	ENSPFOG00000005025	polr1a	100	68.837	Poecilia_formosa
ENSSFOG00015019716	polr1a	100	69.509	ENSPLAG00000021389	polr1a	100	69.267	Poecilia_latipinna
ENSSFOG00015019716	polr1a	100	67.734	ENSPMEG00000006463	polr1a	100	67.564	Poecilia_mexicana
ENSSFOG00015019716	polr1a	100	69.674	ENSPREG00000002389	polr1a	100	69.409	Poecilia_reticulata
ENSSFOG00015019716	polr1a	100	67.073	ENSPPYG00000012217	POLR1A	100	67.169	Pongo_abelii
ENSSFOG00015019716	polr1a	91	68.692	ENSPCAG00000011582	POLR1A	95	57.143	Procavia_capensis
ENSSFOG00015019716	polr1a	100	67.398	ENSPCOG00000026987	POLR1A	100	67.647	Propithecus_coquereli
ENSSFOG00015019716	polr1a	95	66.691	ENSPVAG00000012674	POLR1A	95	66.716	Pteropus_vampyrus
ENSSFOG00015019716	polr1a	100	71.220	ENSPNYG00000000026	polr1a	100	70.911	Pundamilia_nyererei
ENSSFOG00015019716	polr1a	100	72.695	ENSPNAG00000019223	polr1a	99	75.505	Pygocentrus_nattereri
ENSSFOG00015019716	polr1a	100	67.149	ENSRNOG00000009545	Polr1a	100	67.364	Rattus_norvegicus
ENSSFOG00015019716	polr1a	100	67.013	ENSRBIG00000028335	POLR1A	100	67.630	Rhinopithecus_bieti
ENSSFOG00015019716	polr1a	100	66.955	ENSRROG00000031473	POLR1A	100	67.572	Rhinopithecus_roxellana
ENSSFOG00015019716	polr1a	99	36.693	YOR341W	RPA190	99	36.322	Saccharomyces_cerevisiae
ENSSFOG00015019716	polr1a	100	67.054	ENSSBOG00000030262	POLR1A	100	67.225	Saimiri_boliviensis_boliviensis
ENSSFOG00015019716	polr1a	100	62.623	ENSSHAG00000014739	POLR1A	100	63.116	Sarcophilus_harrisii
ENSSFOG00015019716	polr1a	100	71.522	ENSSMAG00000014342	polr1a	100	71.462	Scophthalmus_maximus
ENSSFOG00015019716	polr1a	100	71.270	ENSSDUG00000014631	polr1a	100	71.270	Seriola_dumerili
ENSSFOG00015019716	polr1a	100	69.540	ENSSLDG00000024095	polr1a	100	72.373	Seriola_lalandi_dorsalis
ENSSFOG00015019716	polr1a	71	97.561	ENSSARG00000003136	-	71	97.561	Sorex_araneus
ENSSFOG00015019716	polr1a	100	67.016	ENSSPUG00000004215	POLR1A	99	72.000	Sphenodon_punctatus
ENSSFOG00015019716	polr1a	63	79.002	ENSSPAG00000016341	polr1a	93	79.002	Stegastes_partitus
ENSSFOG00015019716	polr1a	84	69.580	ENSSSCG00000008226	POLR1A	99	69.580	Sus_scrofa
ENSSFOG00015019716	polr1a	99	68.222	ENSTGUG00000010704	POLR1A	100	67.349	Taeniopygia_guttata
ENSSFOG00015019716	polr1a	100	68.440	ENSTRUG00000002210	polr1a	99	68.440	Takifugu_rubripes
ENSSFOG00015019716	polr1a	100	63.458	ENSTNIG00000010116	polr1a	100	63.578	Tetraodon_nigroviridis
ENSSFOG00015019716	polr1a	74	86.283	ENSTBEG00000008646	POLR1A	74	86.283	Tupaia_belangeri
ENSSFOG00015019716	polr1a	100	65.351	ENSTTRG00000008597	POLR1A	100	65.215	Tursiops_truncatus
ENSSFOG00015019716	polr1a	69	67.966	ENSUAMG00000012158	-	94	67.966	Ursus_americanus
ENSSFOG00015019716	polr1a	100	67.153	ENSUMAG00000006700	POLR1A	97	72.814	Ursus_maritimus
ENSSFOG00015019716	polr1a	100	67.712	ENSVVUG00000001245	POLR1A	100	67.596	Vulpes_vulpes
ENSSFOG00015019716	polr1a	100	64.890	ENSXETG00000001952	polr1a	100	66.341	Xenopus_tropicalis
ENSSFOG00015019716	polr1a	100	70.213	ENSXMAG00000004032	polr1a	100	69.172	Xiphophorus_maculatus