EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015019851 (Gene tree)
Gene ID: 108929509
Gene Symbol: -
Alias: -
Full Name: R3H domain-containing protein 1-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 45364 bases
Position: chrKV410788.1:4327182-4372545
Accession: 108929509
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015031357	R3H	PF01424.22	5e-13	1	1
ENSSFOP00015031310	R3H	PF01424.22	6.2e-13	1	1
ENSSFOP00015031188	R3H	PF01424.22	6.3e-13	1	1
ENSSFOP00015031257	R3H	PF01424.22	6.4e-13	1	1
ENSSFOP00015031141	R3H	PF01424.22	6.7e-13	1	1
ENSSFOP00015031413	R3H	PF01424.22	6.7e-13	1	1
ENSSFOP00015031110	R3H	PF01424.22	6.8e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015031709	-	3353	-	ENSSFOP00015031357	922 (aa)	-	-
ENSSFOT00015031540	-	3725	-	ENSSFOP00015031188	1046 (aa)	-	-
ENSSFOT00015031491	-	3815	XM_018744064	ENSSFOP00015031141	1076 (aa)	XP_018599580	-
ENSSFOT00015031609	-	3713	-	ENSSFOP00015031257	1042 (aa)	-	-
ENSSFOT00015031662	-	3683	-	ENSSFOP00015031310	1032 (aa)	-	-
ENSSFOT00015031458	-	3201	-	ENSSFOP00015031110	1066 (aa)	-	-
ENSSFOT00015031765	-	3562	-	ENSSFOP00015031413	1076 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015019851's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015019851's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015019851	-	69	44.168	ENSSFOG00015021262	ARPP21	94	44.037
ENSSFOG00015019851	-	100	70.325	ENSSFOG00015014134	r3hdm1	100	73.105
ENSSFOG00015019851	-	81	61.976	ENSSFOG00015011219	r3hdm2	91	58.424

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015019851	-	100	56.572	ENSG00000048991	R3HDM1	93	75.342	Homo_sapiens
ENSSFOG00015019851	-	94	53.936	ENSAPOG00000020850	r3hdm1	97	48.341	Acanthochromis_polyacanthus
ENSSFOG00015019851	-	100	56.394	ENSAMEG00000014886	R3HDM1	100	56.788	Ailuropoda_melanoleuca
ENSSFOG00015019851	-	94	50.711	ENSAOCG00000005192	r3hdm1	100	48.387	Amphiprion_ocellaris
ENSSFOG00015019851	-	94	56.530	ENSAPEG00000016108	r3hdm1	100	48.183	Amphiprion_percula
ENSSFOG00015019851	-	90	57.722	ENSATEG00000000232	r3hdm1	100	48.684	Anabas_testudineus
ENSSFOG00015019851	-	99	60.019	ENSAPLG00000015231	R3HDM1	100	59.013	Anas_platyrhynchos
ENSSFOG00015019851	-	99	58.942	ENSACAG00000001676	R3HDM1	100	56.121	Anolis_carolinensis
ENSSFOG00015019851	-	100	56.433	ENSANAG00000035334	R3HDM1	100	56.788	Aotus_nancymaae
ENSSFOG00015019851	-	91	58.661	ENSACLG00000027282	r3hdm1	100	47.353	Astatotilapia_calliptera
ENSSFOG00015019851	-	99	59.908	ENSAMXG00000003536	r3hdm1	100	57.332	Astyanax_mexicanus
ENSSFOG00015019851	-	55	51.667	ENSAMXG00000020587	arpp21	81	56.332	Astyanax_mexicanus
ENSSFOG00015019851	-	100	67.028	ENSAMXG00000012861	R3HDM1	100	74.515	Astyanax_mexicanus
ENSSFOG00015019851	-	99	57.195	ENSBTAG00000013302	R3HDM1	100	55.017	Bos_taurus
ENSSFOG00015019851	-	100	56.533	ENSCJAG00000011718	R3HDM1	100	56.800	Callithrix_jacchus
ENSSFOG00015019851	-	99	57.397	ENSCAFG00000005075	R3HDM1	100	56.699	Canis_familiaris
ENSSFOG00015019851	-	99	57.397	ENSCAFG00020016119	R3HDM1	94	64.394	Canis_lupus_dingo
ENSSFOG00015019851	-	99	57.815	ENSCHIG00000020851	R3HDM1	100	56.875	Capra_hircus
ENSSFOG00015019851	-	99	55.213	ENSCPOG00000012784	R3HDM1	100	63.518	Cavia_porcellus
ENSSFOG00015019851	-	100	56.306	ENSCCAG00000027199	R3HDM1	100	56.661	Cebus_capucinus
ENSSFOG00015019851	-	99	64.093	ENSCATG00000023642	R3HDM1	100	56.483	Cercocebus_atys
ENSSFOG00015019851	-	99	56.199	ENSCLAG00000007962	R3HDM1	100	65.472	Chinchilla_lanigera
ENSSFOG00015019851	-	99	56.884	ENSCSAG00000016356	R3HDM1	100	54.978	Chlorocebus_sabaeus
ENSSFOG00015019851	-	78	70.677	ENSCHOG00000013638	R3HDM1	81	70.677	Choloepus_hoffmanni
ENSSFOG00015019851	-	88	67.488	ENSCPBG00000009645	R3HDM1	100	77.289	Chrysemys_picta_bellii
ENSSFOG00015019851	-	100	55.911	ENSCANG00000034748	R3HDM1	100	56.256	Colobus_angolensis_palliatus
ENSSFOG00015019851	-	99	56.256	ENSCGRG00001012357	R3hdm1	97	54.419	Cricetulus_griseus_chok1gshd
ENSSFOG00015019851	-	99	56.453	ENSCGRG00000012080	R3hdm1	100	66.124	Cricetulus_griseus_crigri
ENSSFOG00015019851	-	90	52.941	ENSCSEG00000008944	r3hdm1	100	44.495	Cynoglossus_semilaevis
ENSSFOG00015019851	-	94	52.195	ENSCVAG00000007582	r3hdm1	100	48.120	Cyprinodon_variegatus
ENSSFOG00015019851	-	70	35.286	ENSDARG00000061081	arpp21	87	33.138	Danio_rerio
ENSSFOG00015019851	-	100	54.181	ENSDNOG00000000771	R3HDM1	100	54.537	Dasypus_novemcinctus
ENSSFOG00015019851	-	96	56.308	ENSETEG00000013606	R3HDM1	100	51.809	Echinops_telfairi
ENSSFOG00015019851	-	66	37.940	ENSEBUG00000014746	arpp21	99	40.061	Eptatretus_burgeri
ENSSFOG00015019851	-	96	63.419	ENSEASG00005007392	R3HDM1	100	56.990	Equus_asinus_asinus
ENSSFOG00015019851	-	96	63.419	ENSECAG00000019114	R3HDM1	100	56.800	Equus_caballus
ENSSFOG00015019851	-	79	55.952	ENSEEUG00000012589	R3HDM1	75	55.952	Erinaceus_europaeus
ENSSFOG00015019851	-	84	66.667	ENSELUG00000014413	r3hdm1	100	53.825	Esox_lucius
ENSSFOG00015019851	-	88	70.270	ENSELUG00000004909	R3HDM1	99	59.249	Esox_lucius
ENSSFOG00015019851	-	96	63.221	ENSFCAG00000027113	R3HDM1	100	56.812	Felis_catus
ENSSFOG00015019851	-	97	60.343	ENSFALG00000013731	R3HDM1	93	55.585	Ficedula_albicollis
ENSSFOG00015019851	-	99	56.884	ENSFDAG00000016478	R3HDM1	100	67.427	Fukomys_damarensis
ENSSFOG00015019851	-	94	52.226	ENSFHEG00000018713	r3hdm1	100	47.290	Fundulus_heteroclitus
ENSSFOG00015019851	-	70	67.681	ENSGMOG00000006042	-	81	65.065	Gadus_morhua
ENSSFOG00015019851	-	99	60.870	ENSGALG00000012246	R3HDM1	100	61.165	Gallus_gallus
ENSSFOG00015019851	-	94	53.115	ENSGAFG00000006203	r3hdm1	100	46.997	Gambusia_affinis
ENSSFOG00015019851	-	92	61.053	ENSGACG00000014925	r3hdm1	99	48.636	Gasterosteus_aculeatus
ENSSFOG00015019851	-	97	62.298	ENSGAGG00000007840	R3HDM1	100	58.177	Gopherus_agassizii
ENSSFOG00015019851	-	100	56.483	ENSGGOG00000008156	R3HDM1	99	58.376	Gorilla_gorilla
ENSSFOG00015019851	-	55	55.842	ENSHBUG00000015737	R3HDM1	97	55.556	Haplochromis_burtoni
ENSSFOG00015019851	-	99	57.000	ENSHGLG00000015718	R3HDM1	100	66.450	Heterocephalus_glaber_female
ENSSFOG00015019851	-	95	44.554	ENSHGLG00100015374	-	93	48.140	Heterocephalus_glaber_male
ENSSFOG00015019851	-	99	57.143	ENSHGLG00100003184	-	100	67.101	Heterocephalus_glaber_male
ENSSFOG00015019851	-	91	53.831	ENSHCOG00000013366	r3hdm1	87	58.780	Hippocampus_comes
ENSSFOG00015019851	-	52	50.242	ENSIPUG00000020552	arpp21	92	38.196	Ictalurus_punctatus
ENSSFOG00015019851	-	95	63.237	ENSIPUG00000001676	R3HDM1	100	64.350	Ictalurus_punctatus
ENSSFOG00015019851	-	99	58.425	ENSIPUG00000013629	r3hdm1	95	56.958	Ictalurus_punctatus
ENSSFOG00015019851	-	100	56.622	ENSSTOG00000007572	R3HDM1	100	67.101	Ictidomys_tridecemlineatus
ENSSFOG00015019851	-	51	57.676	ENSLBEG00000027981	-	99	56.108	Labrus_bergylta
ENSSFOG00015019851	-	92	67.647	ENSLACG00000005334	R3HDM1	99	58.510	Latimeria_chalumnae
ENSSFOG00015019851	-	100	65.014	ENSLOCG00000001641	r3hdm1	100	64.209	Lepisosteus_oculatus
ENSSFOG00015019851	-	99	57.285	ENSLAFG00000009065	R3HDM1	100	55.306	Loxodonta_africana
ENSSFOG00015019851	-	100	56.394	ENSMFAG00000030331	R3HDM1	100	56.661	Macaca_fascicularis
ENSSFOG00015019851	-	100	56.306	ENSMMUG00000009844	R3HDM1	100	56.572	Macaca_mulatta
ENSSFOG00015019851	-	100	56.306	ENSMNEG00000027793	R3HDM1	100	56.572	Macaca_nemestrina
ENSSFOG00015019851	-	100	56.394	ENSMLEG00000043189	R3HDM1	100	56.661	Mandrillus_leucophaeus
ENSSFOG00015019851	-	93	55.556	ENSMAMG00000004532	r3hdm1	100	49.807	Mastacembelus_armatus
ENSSFOG00015019851	-	94	55.978	ENSMZEG00005003157	r3hdm1	100	49.086	Maylandia_zebra
ENSSFOG00015019851	-	99	59.357	ENSMGAG00000012461	R3HDM1	100	58.259	Meleagris_gallopavo
ENSSFOG00015019851	-	99	56.463	ENSMAUG00000010315	R3hdm1	100	66.124	Mesocricetus_auratus
ENSSFOG00015019851	-	91	65.854	ENSMICG00000005900	-	100	60.922	Microcebus_murinus
ENSSFOG00015019851	-	94	43.666	ENSMICG00000042655	-	96	65.385	Microcebus_murinus
ENSSFOG00015019851	-	52	61.664	ENSMOCG00000019833	-	100	65.798	Microtus_ochrogaster
ENSSFOG00015019851	-	96	57.802	ENSMODG00000000923	R3HDM1	97	57.909	Monodelphis_domestica
ENSSFOG00015019851	-	98	53.102	ENSMALG00000009000	r3hdm1	99	46.897	Monopterus_albus
ENSSFOG00015019851	-	99	56.312	MGP_CAROLIEiJ_G0014543	R3hdm1	100	68.163	Mus_caroli
ENSSFOG00015019851	-	99	56.312	ENSMUSG00000056211	R3hdm1	100	68.163	Mus_musculus
ENSSFOG00015019851	-	99	56.494	MGP_PahariEiJ_G0027779	R3hdm1	100	68.163	Mus_pahari
ENSSFOG00015019851	-	99	56.261	MGP_SPRETEiJ_G0015350	R3hdm1	100	68.163	Mus_spretus
ENSSFOG00015019851	-	99	57.357	ENSMPUG00000002412	R3HDM1	100	56.584	Mustela_putorius_furo
ENSSFOG00015019851	-	100	55.713	ENSMLUG00000013824	R3HDM1	100	56.106	Myotis_lucifugus
ENSSFOG00015019851	-	100	56.750	ENSNLEG00000008622	R3HDM1	100	56.927	Nomascus_leucogenys
ENSSFOG00015019851	-	90	59.761	ENSMEUG00000011784	R3HDM1	93	59.761	Notamacropus_eugenii
ENSSFOG00015019851	-	99	55.971	ENSODEG00000008607	R3HDM1	100	66.124	Octodon_degus
ENSSFOG00015019851	-	93	60.460	ENSONIG00000012017	r3hdm1	98	48.801	Oreochromis_niloticus
ENSSFOG00015019851	-	99	57.959	ENSOANG00000007987	R3HDM1	100	57.335	Ornithorhynchus_anatinus
ENSSFOG00015019851	-	95	57.561	ENSOCUG00000017366	R3HDM1	98	58.209	Oryctolagus_cuniculus
ENSSFOG00015019851	-	94	57.396	ENSORLG00000004297	r3hdm1	100	46.218	Oryzias_latipes
ENSSFOG00015019851	-	94	57.480	ENSORLG00015017355	r3hdm1	97	52.313	Oryzias_latipes_hsok
ENSSFOG00015019851	-	56	54.982	ENSOMEG00000003882	-	96	58.955	Oryzias_melastigma
ENSSFOG00015019851	-	100	55.861	ENSOGAG00000003136	R3HDM1	100	56.406	Otolemur_garnettii
ENSSFOG00015019851	-	99	57.964	ENSOARG00000010788	R3HDM1	100	57.015	Ovis_aries
ENSSFOG00015019851	-	100	56.472	ENSPPAG00000027858	R3HDM1	100	56.738	Pan_paniscus
ENSSFOG00015019851	-	99	57.653	ENSPPRG00000002626	R3HDM1	100	56.901	Panthera_pardus
ENSSFOG00015019851	-	99	57.653	ENSPTIG00000016581	R3HDM1	100	56.901	Panthera_tigris_altaica
ENSSFOG00015019851	-	100	56.472	ENSPTRG00000012494	R3HDM1	100	56.738	Pan_troglodytes
ENSSFOG00015019851	-	100	56.394	ENSPANG00000026448	R3HDM1	100	56.661	Papio_anubis
ENSSFOG00015019851	-	99	67.225	ENSPKIG00000004328	r3hdm1	95	67.424	Paramormyrops_kingsleyae
ENSSFOG00015019851	-	57	60.413	ENSPKIG00000011224	R3HDM1	90	67.726	Paramormyrops_kingsleyae
ENSSFOG00015019851	-	99	59.087	ENSPSIG00000012915	R3HDM1	100	58.513	Pelodiscus_sinensis
ENSSFOG00015019851	-	50	52.092	ENSPMGG00000011264	-	86	56.386	Periophthalmus_magnuspinnatus
ENSSFOG00015019851	-	99	56.857	ENSPEMG00000015187	R3hdm1	100	65.798	Peromyscus_maniculatus_bairdii
ENSSFOG00015019851	-	88	54.148	ENSPMAG00000003369	-	99	43.391	Petromyzon_marinus
ENSSFOG00015019851	-	96	64.286	ENSPCIG00000002491	R3HDM1	93	67.202	Phascolarctos_cinereus
ENSSFOG00015019851	-	87	57.088	ENSPFOG00000015036	r3hdm1	100	48.411	Poecilia_formosa
ENSSFOG00015019851	-	94	56.180	ENSPLAG00000018042	r3hdm1	100	47.536	Poecilia_latipinna
ENSSFOG00015019851	-	95	47.363	ENSPMEG00000023947	r3hdm1	100	47.582	Poecilia_mexicana
ENSSFOG00015019851	-	94	54.023	ENSPREG00000007902	r3hdm1	88	64.133	Poecilia_reticulata
ENSSFOG00015019851	-	99	56.916	ENSPPYG00000012815	R3HDM1	100	56.322	Pongo_abelii
ENSSFOG00015019851	-	89	65.282	ENSPCAG00000006208	R3HDM1	88	65.089	Procavia_capensis
ENSSFOG00015019851	-	97	57.224	ENSPCOG00000012698	R3HDM1	100	54.400	Propithecus_coquereli
ENSSFOG00015019851	-	96	55.725	ENSPVAG00000006098	R3HDM1	100	50.667	Pteropus_vampyrus
ENSSFOG00015019851	-	100	59.079	ENSPNAG00000013952	r3hdm1	100	65.340	Pygocentrus_nattereri
ENSSFOG00015019851	-	56	53.252	ENSPNAG00000004162	arpp21	95	43.108	Pygocentrus_nattereri
ENSSFOG00015019851	-	82	81.639	ENSPNAG00000005436	R3HDM1	99	81.579	Pygocentrus_nattereri
ENSSFOG00015019851	-	99	56.131	ENSRNOG00000004099	R3hdm1	100	54.080	Rattus_norvegicus
ENSSFOG00015019851	-	100	55.142	ENSRBIG00000033317	R3HDM1	100	57.751	Rhinopithecus_bieti
ENSSFOG00015019851	-	95	63.158	ENSRROG00000034534	R3HDM1	100	56.217	Rhinopithecus_roxellana
ENSSFOG00015019851	-	100	56.039	ENSSBOG00000020389	R3HDM1	100	56.394	Saimiri_boliviensis_boliviensis
ENSSFOG00015019851	-	96	63.889	ENSSHAG00000016999	R3HDM1	100	58.244	Sarcophilus_harrisii
ENSSFOG00015019851	-	98	57.115	ENSSMAG00000001669	r3hdm1	99	47.105	Scophthalmus_maximus
ENSSFOG00015019851	-	89	57.418	ENSSDUG00000010749	r3hdm1	100	48.201	Seriola_dumerili
ENSSFOG00015019851	-	92	61.319	ENSSLDG00000004499	r3hdm1	99	48.384	Seriola_lalandi_dorsalis
ENSSFOG00015019851	-	64	59.283	ENSSARG00000000352	-	64	59.283	Sorex_araneus
ENSSFOG00015019851	-	100	58.438	ENSSPUG00000004167	R3HDM1	100	58.834	Sphenodon_punctatus
ENSSFOG00015019851	-	94	57.815	ENSSPAG00000004648	r3hdm1	100	50.143	Stegastes_partitus
ENSSFOG00015019851	-	96	62.823	ENSSSCG00000015692	R3HDM1	100	56.584	Sus_scrofa
ENSSFOG00015019851	-	100	58.009	ENSTGUG00000011750	R3HDM1	100	57.838	Taeniopygia_guttata
ENSSFOG00015019851	-	94	54.396	ENSTRUG00000011654	r3hdm1	99	46.118	Takifugu_rubripes
ENSSFOG00015019851	-	91	47.830	ENSTNIG00000010362	r3hdm1	98	46.869	Tetraodon_nigroviridis
ENSSFOG00015019851	-	95	58.550	ENSTTRG00000003935	R3HDM1	100	52.946	Tursiops_truncatus
ENSSFOG00015019851	-	76	57.646	ENSUAMG00000024806	R3HDM1	93	66.410	Ursus_americanus
ENSSFOG00015019851	-	96	63.221	ENSUMAG00000005552	R3HDM1	100	54.408	Ursus_maritimus
ENSSFOG00015019851	-	85	65.829	ENSVPAG00000007333	R3HDM1	88	55.092	Vicugna_pacos
ENSSFOG00015019851	-	95	63.765	ENSVVUG00000006457	R3HDM1	100	55.134	Vulpes_vulpes
ENSSFOG00015019851	-	95	53.568	ENSXETG00000019330	r3hdm1	99	55.135	Xenopus_tropicalis
ENSSFOG00015019851	-	64	62.217	ENSXCOG00000017448	r3hdm1	91	50.535	Xiphophorus_couchianus
ENSSFOG00015019851	-	93	57.393	ENSXMAG00000007885	r3hdm1	100	48.592	Xiphophorus_maculatus