EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015019860 (Gene tree)
Gene ID: 108942704
Gene Symbol: polr1c
Alias: zgc:65973
Full Name: RNA polymerase I and III subunit C
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 4253 bases
Position: chrKV411250.1:5277912-5282164
Accession: 108942704
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015030984	RNA_pol_A_bac	PF01000.26	1.6e-30	1	1
ENSSFOP00015030984	RNA_pol_L	PF01193.24	3.8e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015031333	-	1638	XM_018766174	ENSSFOP00015030984	347 (aa)	XP_018621690	A0A1W5B820

Gene Model

Click here to download ENSSFOG00015019860's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03020	RNA polymerase	KEGG
sfm04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015019860's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015019860	polr1c	100	74.352	ENSG00000171453	POLR1C	100	82.258	Homo_sapiens
ENSSFOG00015019860	polr1c	100	82.051	ENSAPOG00000024356	polr1c	100	82.621	Acanthochromis_polyacanthus
ENSSFOG00015019860	polr1c	98	75.294	ENSAMEG00000012205	POLR1C	98	75.294	Ailuropoda_melanoleuca
ENSSFOG00015019860	polr1c	94	69.789	ENSACIG00000016268	polr1c	91	70.393	Amphilophus_citrinellus
ENSSFOG00015019860	polr1c	100	80.627	ENSAOCG00000011687	polr1c	97	81.197	Amphiprion_ocellaris
ENSSFOG00015019860	polr1c	100	80.912	ENSAPEG00000002433	polr1c	100	81.481	Amphiprion_percula
ENSSFOG00015019860	polr1c	99	82.235	ENSATEG00000005985	polr1c	99	82.235	Anabas_testudineus
ENSSFOG00015019860	polr1c	86	73.667	ENSAPLG00000002908	POLR1C	100	73.667	Anas_platyrhynchos
ENSSFOG00015019860	polr1c	89	74.351	ENSACAG00000009764	POLR1C	88	74.351	Anolis_carolinensis
ENSSFOG00015019860	polr1c	100	74.063	ENSANAG00000025805	POLR1C	99	74.063	Aotus_nancymaae
ENSSFOG00015019860	polr1c	100	82.621	ENSACLG00000006573	polr1c	100	83.191	Astatotilapia_calliptera
ENSSFOG00015019860	polr1c	100	85.879	ENSAMXG00000012062	polr1c	99	85.879	Astyanax_mexicanus
ENSSFOG00015019860	polr1c	99	74.783	ENSBTAG00000018969	POLR1C	99	74.783	Bos_taurus
ENSSFOG00015019860	polr1c	97	47.191	WBGene00019275	rpac-40	94	47.191	Caenorhabditis_elegans
ENSSFOG00015019860	polr1c	99	73.623	ENSCJAG00000005594	POLR1C	99	73.623	Callithrix_jacchus
ENSSFOG00015019860	polr1c	99	74.493	ENSCAFG00000001872	POLR1C	99	74.493	Canis_familiaris
ENSSFOG00015019860	polr1c	60	31.308	ENSCAFG00020007660	POLR2C	60	31.308	Canis_lupus_dingo
ENSSFOG00015019860	polr1c	99	74.493	ENSCAFG00020012018	POLR1C	99	74.493	Canis_lupus_dingo
ENSSFOG00015019860	polr1c	99	74.277	ENSCHIG00000004352	POLR1C	99	74.277	Capra_hircus
ENSSFOG00015019860	polr1c	99	74.493	ENSTSYG00000011921	POLR1C	99	74.493	Carlito_syrichta
ENSSFOG00015019860	polr1c	86	76.589	ENSCAPG00000015364	POLR1C	88	76.589	Cavia_aperea
ENSSFOG00015019860	polr1c	100	74.928	ENSCPOG00000038098	POLR1C	100	74.928	Cavia_porcellus
ENSSFOG00015019860	polr1c	99	74.203	ENSCCAG00000020169	POLR1C	99	74.203	Cebus_capucinus
ENSSFOG00015019860	polr1c	100	74.352	ENSCATG00000044045	POLR1C	100	74.352	Cercocebus_atys
ENSSFOG00015019860	polr1c	60	31.308	ENSCLAG00000013676	POLR2C	52	31.308	Chinchilla_lanigera
ENSSFOG00015019860	polr1c	100	75.504	ENSCLAG00000009266	POLR1C	100	75.504	Chinchilla_lanigera
ENSSFOG00015019860	polr1c	100	73.487	ENSCSAG00000011913	POLR1C	100	73.487	Chlorocebus_sabaeus
ENSSFOG00015019860	polr1c	61	71.226	ENSCHOG00000006601	POLR1C	100	71.226	Choloepus_hoffmanni
ENSSFOG00015019860	polr1c	98	77.419	ENSCPBG00000025203	POLR1C	99	77.419	Chrysemys_picta_bellii
ENSSFOG00015019860	polr1c	98	55.425	ENSCING00000003563	-	98	55.425	Ciona_intestinalis
ENSSFOG00015019860	polr1c	100	74.063	ENSCANG00000043167	POLR1C	100	74.063	Colobus_angolensis_palliatus
ENSSFOG00015019860	polr1c	99	73.623	ENSCGRG00001017533	Polr1c	99	73.623	Cricetulus_griseus_chok1gshd
ENSSFOG00015019860	polr1c	86	75.251	ENSCGRG00000013225	Polr1c	100	75.251	Cricetulus_griseus_crigri
ENSSFOG00015019860	polr1c	100	82.421	ENSCSEG00000018097	polr1c	100	82.421	Cynoglossus_semilaevis
ENSSFOG00015019860	polr1c	61	82.075	ENSCVAG00000005684	polr1c	87	81.193	Cyprinodon_variegatus
ENSSFOG00015019860	polr1c	100	84.438	ENSDARG00000039400	polr1c	96	84.438	Danio_rerio
ENSSFOG00015019860	polr1c	100	74.640	ENSDNOG00000042693	POLR1C	100	74.640	Dasypus_novemcinctus
ENSSFOG00015019860	polr1c	99	75.072	ENSDORG00000000429	Polr1c	99	75.072	Dipodomys_ordii
ENSSFOG00015019860	polr1c	90	53.185	FBgn0031657	CG3756	93	53.185	Drosophila_melanogaster
ENSSFOG00015019860	polr1c	99	71.676	ENSETEG00000010807	POLR1C	99	71.676	Echinops_telfairi
ENSSFOG00015019860	polr1c	99	70.468	ENSEBUG00000013725	polr1c	98	70.468	Eptatretus_burgeri
ENSSFOG00015019860	polr1c	99	74.493	ENSEASG00005003338	POLR1C	99	74.493	Equus_asinus_asinus
ENSSFOG00015019860	polr1c	99	74.493	ENSECAG00000023516	POLR1C	98	74.493	Equus_caballus
ENSSFOG00015019860	polr1c	98	76.765	ENSEEUG00000005471	POLR1C	98	76.765	Erinaceus_europaeus
ENSSFOG00015019860	polr1c	100	84.726	ENSELUG00000013027	polr1c	100	84.726	Esox_lucius
ENSSFOG00015019860	polr1c	99	73.623	ENSFCAG00000009735	POLR1C	99	73.623	Felis_catus
ENSSFOG00015019860	polr1c	93	73.994	ENSFALG00000012111	POLR1C	100	73.994	Ficedula_albicollis
ENSSFOG00015019860	polr1c	99	74.203	ENSFDAG00000008428	POLR1C	99	74.203	Fukomys_damarensis
ENSSFOG00015019860	polr1c	50	77.841	ENSFHEG00000013867	-	86	77.841	Fundulus_heteroclitus
ENSSFOG00015019860	polr1c	100	69.741	ENSFHEG00000000262	polr1c	100	70.029	Fundulus_heteroclitus
ENSSFOG00015019860	polr1c	93	81.173	ENSGMOG00000013878	polr1c	100	81.173	Gadus_morhua
ENSSFOG00015019860	polr1c	100	73.775	ENSGALG00000010349	POLR1C	100	73.775	Gallus_gallus
ENSSFOG00015019860	polr1c	100	81.481	ENSGAFG00000010153	polr1c	100	81.766	Gambusia_affinis
ENSSFOG00015019860	polr1c	100	76.923	ENSGACG00000002453	polr1c	100	77.778	Gasterosteus_aculeatus
ENSSFOG00015019860	polr1c	98	76.540	ENSGAGG00000010640	POLR1C	99	76.540	Gopherus_agassizii
ENSSFOG00015019860	polr1c	100	74.352	ENSGGOG00000010903	POLR1C	100	74.352	Gorilla_gorilla
ENSSFOG00015019860	polr1c	100	76.081	ENSHBUG00000017816	polr1c	100	76.081	Haplochromis_burtoni
ENSSFOG00015019860	polr1c	99	74.203	ENSHGLG00000019441	POLR1C	100	74.231	Heterocephalus_glaber_female
ENSSFOG00015019860	polr1c	99	74.493	ENSHGLG00100005970	POLR1C	100	74.231	Heterocephalus_glaber_male
ENSSFOG00015019860	polr1c	98	77.681	ENSHCOG00000002179	polr1c	99	77.681	Hippocampus_comes
ENSSFOG00015019860	polr1c	100	85.920	ENSIPUG00000024464	polr1c	100	85.920	Ictalurus_punctatus
ENSSFOG00015019860	polr1c	60	31.308	ENSSTOG00000015150	-	50	31.308	Ictidomys_tridecemlineatus
ENSSFOG00015019860	polr1c	99	74.493	ENSSTOG00000010631	POLR1C	99	74.493	Ictidomys_tridecemlineatus
ENSSFOG00015019860	polr1c	99	74.783	ENSJJAG00000023110	Polr1c	99	74.783	Jaculus_jaculus
ENSSFOG00015019860	polr1c	100	79.202	ENSKMAG00000014305	polr1c	97	79.772	Kryptolebias_marmoratus
ENSSFOG00015019860	polr1c	100	81.197	ENSLBEG00000014925	polr1c	100	81.766	Labrus_bergylta
ENSSFOG00015019860	polr1c	95	60.542	ENSLACG00000012567	POLR1C	98	60.542	Latimeria_chalumnae
ENSSFOG00015019860	polr1c	100	85.591	ENSLOCG00000016710	polr1c	96	85.591	Lepisosteus_oculatus
ENSSFOG00015019860	polr1c	60	31.308	ENSLAFG00000027230	POLR2C	74	31.308	Loxodonta_africana
ENSSFOG00015019860	polr1c	86	76.744	ENSLAFG00000026248	POLR1C	100	76.744	Loxodonta_africana
ENSSFOG00015019860	polr1c	100	74.063	ENSMFAG00000046295	POLR1C	100	74.063	Macaca_fascicularis
ENSSFOG00015019860	polr1c	100	74.063	ENSMMUG00000015192	POLR1C	100	74.063	Macaca_mulatta
ENSSFOG00015019860	polr1c	100	74.063	ENSMNEG00000028073	POLR1C	100	74.063	Macaca_nemestrina
ENSSFOG00015019860	polr1c	100	74.063	ENSMLEG00000034818	POLR1C	100	74.063	Mandrillus_leucophaeus
ENSSFOG00015019860	polr1c	100	82.051	ENSMAMG00000008700	polr1c	100	82.051	Mastacembelus_armatus
ENSSFOG00015019860	polr1c	100	82.336	ENSMZEG00005018545	polr1c	100	82.906	Maylandia_zebra
ENSSFOG00015019860	polr1c	84	70.790	ENSMGAG00000011020	POLR1C	100	70.790	Meleagris_gallopavo
ENSSFOG00015019860	polr1c	99	73.623	ENSMAUG00000014329	Polr1c	99	73.623	Mesocricetus_auratus
ENSSFOG00015019860	polr1c	99	73.913	ENSMICG00000005027	POLR1C	99	73.941	Microcebus_murinus
ENSSFOG00015019860	polr1c	99	73.623	ENSMOCG00000017549	Polr1c	99	73.623	Microtus_ochrogaster
ENSSFOG00015019860	polr1c	59	30.144	ENSMOCG00000013652	Polr2c	73	30.144	Microtus_ochrogaster
ENSSFOG00015019860	polr1c	100	67.435	ENSMMOG00000005380	polr1c	100	67.723	Mola_mola
ENSSFOG00015019860	polr1c	84	77.320	ENSMODG00000018964	POLR1C	100	77.320	Monodelphis_domestica
ENSSFOG00015019860	polr1c	100	72.334	ENSMALG00000011711	polr1c	100	72.622	Monopterus_albus
ENSSFOG00015019860	polr1c	99	65.797	MGP_CAROLIEiJ_G0021662	Polr1c	100	75.000	Mus_caroli
ENSSFOG00015019860	polr1c	99	74.493	ENSMUSG00000067148	Polr1c	100	75.000	Mus_musculus
ENSSFOG00015019860	polr1c	99	73.913	MGP_PahariEiJ_G0020654	Polr1c	100	74.615	Mus_pahari
ENSSFOG00015019860	polr1c	99	74.493	MGP_SPRETEiJ_G0022574	Polr1c	100	75.000	Mus_spretus
ENSSFOG00015019860	polr1c	99	74.493	ENSMPUG00000012916	POLR1C	91	74.493	Mustela_putorius_furo
ENSSFOG00015019860	polr1c	99	74.493	ENSMLUG00000017751	POLR1C	99	74.493	Myotis_lucifugus
ENSSFOG00015019860	polr1c	99	75.072	ENSNGAG00000023487	Polr1c	100	77.663	Nannospalax_galili
ENSSFOG00015019860	polr1c	100	82.621	ENSNBRG00000018742	polr1c	100	83.191	Neolamprologus_brichardi
ENSSFOG00015019860	polr1c	100	74.352	ENSNLEG00000004035	POLR1C	100	74.352	Nomascus_leucogenys
ENSSFOG00015019860	polr1c	98	64.118	ENSMEUG00000006778	POLR1C	98	64.118	Notamacropus_eugenii
ENSSFOG00015019860	polr1c	77	74.157	ENSOPRG00000000145	POLR1C	99	74.157	Ochotona_princeps
ENSSFOG00015019860	polr1c	100	75.504	ENSODEG00000015831	-	100	75.504	Octodon_degus
ENSSFOG00015019860	polr1c	63	72.936	ENSODEG00000017109	-	99	72.936	Octodon_degus
ENSSFOG00015019860	polr1c	100	82.906	ENSONIG00000013133	polr1c	98	83.476	Oreochromis_niloticus
ENSSFOG00015019860	polr1c	99	73.043	ENSOANG00000003043	POLR1C	99	73.043	Ornithorhynchus_anatinus
ENSSFOG00015019860	polr1c	99	73.913	ENSOCUG00000005504	POLR1C	99	73.913	Oryctolagus_cuniculus
ENSSFOG00015019860	polr1c	99	76.657	ENSORLG00000019743	polr1c	99	76.657	Oryzias_latipes
ENSSFOG00015019860	polr1c	99	77.522	ENSORLG00020006489	POLR1C	99	77.522	Oryzias_latipes_hni
ENSSFOG00015019860	polr1c	77	60.145	ENSORLG00020005555	polr1c	81	60.145	Oryzias_latipes_hni
ENSSFOG00015019860	polr1c	99	77.233	ENSORLG00015013322	polr1c	99	77.233	Oryzias_latipes_hsok
ENSSFOG00015019860	polr1c	98	79.130	ENSOMEG00000016527	polr1c	98	79.130	Oryzias_melastigma
ENSSFOG00015019860	polr1c	99	73.775	ENSOGAG00000016318	POLR1C	99	73.775	Otolemur_garnettii
ENSSFOG00015019860	polr1c	99	74.493	ENSOARG00000007503	POLR1C	99	74.493	Ovis_aries
ENSSFOG00015019860	polr1c	100	74.352	ENSPPAG00000043678	POLR1C	100	74.352	Pan_paniscus
ENSSFOG00015019860	polr1c	99	73.623	ENSPPRG00000009760	POLR1C	99	73.623	Panthera_pardus
ENSSFOG00015019860	polr1c	99	73.623	ENSPTIG00000014813	POLR1C	99	73.623	Panthera_tigris_altaica
ENSSFOG00015019860	polr1c	100	74.352	ENSPTRG00000018202	POLR1C	100	74.352	Pan_troglodytes
ENSSFOG00015019860	polr1c	100	74.352	ENSPANG00000009025	POLR1C	99	74.352	Papio_anubis
ENSSFOG00015019860	polr1c	100	88.473	ENSPKIG00000009858	polr1c	100	88.473	Paramormyrops_kingsleyae
ENSSFOG00015019860	polr1c	98	77.941	ENSPSIG00000012580	POLR1C	93	77.941	Pelodiscus_sinensis
ENSSFOG00015019860	polr1c	100	70.317	ENSPMGG00000012121	polr1c	100	70.605	Periophthalmus_magnuspinnatus
ENSSFOG00015019860	polr1c	99	73.913	ENSPEMG00000006970	Polr1c	99	73.913	Peromyscus_maniculatus_bairdii
ENSSFOG00015019860	polr1c	60	31.481	ENSPMAG00000004827	polr2c	88	31.481	Petromyzon_marinus
ENSSFOG00015019860	polr1c	99	73.563	ENSPMAG00000005560	polr1c	99	73.563	Petromyzon_marinus
ENSSFOG00015019860	polr1c	98	75.882	ENSPCIG00000028137	POLR1C	97	75.882	Phascolarctos_cinereus
ENSSFOG00015019860	polr1c	100	80.342	ENSPFOG00000014342	POLR1C	100	80.627	Poecilia_formosa
ENSSFOG00015019860	polr1c	100	80.342	ENSPFOG00000014357	polr1c	98	80.627	Poecilia_formosa
ENSSFOG00015019860	polr1c	69	75.732	ENSPLAG00000004111	polr1c	99	75.732	Poecilia_latipinna
ENSSFOG00015019860	polr1c	100	80.342	ENSPMEG00000011877	-	100	80.627	Poecilia_mexicana
ENSSFOG00015019860	polr1c	100	80.342	ENSPMEG00000008420	polr1c	100	80.627	Poecilia_mexicana
ENSSFOG00015019860	polr1c	100	81.556	ENSPREG00000007985	polr1c	100	81.556	Poecilia_reticulata
ENSSFOG00015019860	polr1c	100	74.352	ENSPPYG00000016645	POLR1C	100	74.352	Pongo_abelii
ENSSFOG00015019860	polr1c	99	74.493	ENSPCOG00000024628	POLR1C	99	74.493	Propithecus_coquereli
ENSSFOG00015019860	polr1c	99	67.536	ENSPVAG00000005689	POLR1C	99	67.536	Pteropus_vampyrus
ENSSFOG00015019860	polr1c	100	82.720	ENSPNYG00000003620	polr1c	100	83.191	Pundamilia_nyererei
ENSSFOG00015019860	polr1c	100	87.608	ENSPNAG00000008443	polr1c	100	87.608	Pygocentrus_nattereri
ENSSFOG00015019860	polr1c	99	73.333	ENSRNOG00000019079	Polr1c	100	73.462	Rattus_norvegicus
ENSSFOG00015019860	polr1c	100	74.352	ENSRBIG00000007155	POLR1C	100	74.352	Rhinopithecus_bieti
ENSSFOG00015019860	polr1c	100	74.352	ENSRROG00000000257	POLR1C	100	74.352	Rhinopithecus_roxellana
ENSSFOG00015019860	polr1c	54	31.282	YIL021W	RPB3	55	31.282	Saccharomyces_cerevisiae
ENSSFOG00015019860	polr1c	92	51.402	YPR110C	RPC40	95	51.402	Saccharomyces_cerevisiae
ENSSFOG00015019860	polr1c	99	74.203	ENSSBOG00000025735	POLR1C	99	73.856	Saimiri_boliviensis_boliviensis
ENSSFOG00015019860	polr1c	98	69.118	ENSSHAG00000014456	POLR1C	98	69.118	Sarcophilus_harrisii
ENSSFOG00015019860	polr1c	100	84.150	ENSSMAG00000018865	polr1c	100	84.150	Scophthalmus_maximus
ENSSFOG00015019860	polr1c	100	82.906	ENSSDUG00000015745	polr1c	91	83.476	Seriola_dumerili
ENSSFOG00015019860	polr1c	100	82.621	ENSSLDG00000018285	polr1c	91	83.191	Seriola_lalandi_dorsalis
ENSSFOG00015019860	polr1c	99	71.429	ENSSPUG00000011822	POLR1C	99	71.429	Sphenodon_punctatus
ENSSFOG00015019860	polr1c	100	81.766	ENSSPAG00000022369	polr1c	100	82.336	Stegastes_partitus
ENSSFOG00015019860	polr1c	99	74.783	ENSSSCG00000028007	POLR1C	97	76.080	Sus_scrofa
ENSSFOG00015019860	polr1c	96	74.699	ENSTGUG00000009159	POLR1C	99	74.699	Taeniopygia_guttata
ENSSFOG00015019860	polr1c	100	77.778	ENSTRUG00000006264	polr1c	100	77.778	Takifugu_rubripes
ENSSFOG00015019860	polr1c	51	72.472	ENSTBEG00000002254	POLR1C	100	72.472	Tupaia_belangeri
ENSSFOG00015019860	polr1c	76	74.144	ENSTTRG00000006344	POLR1C	76	74.144	Tursiops_truncatus
ENSSFOG00015019860	polr1c	99	74.493	ENSUAMG00000025602	POLR1C	99	74.493	Ursus_americanus
ENSSFOG00015019860	polr1c	99	74.493	ENSUMAG00000005938	POLR1C	99	74.493	Ursus_maritimus
ENSSFOG00015019860	polr1c	99	72.174	ENSVVUG00000028922	POLR1C	99	72.174	Vulpes_vulpes
ENSSFOG00015019860	polr1c	100	72.414	ENSXETG00000010882	polr1c	100	72.414	Xenopus_tropicalis
ENSSFOG00015019860	polr1c	100	81.609	ENSXCOG00000014185	polr1c	100	81.609	Xiphophorus_couchianus
ENSSFOG00015019860	polr1c	100	80.912	ENSXMAG00000015076	polr1c	100	81.197	Xiphophorus_maculatus