EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015020129 (Gene tree)
Gene ID: 108921336
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 20821 bases
Position: chrKV410807.1:6232570-6253390
Accession: 108921336
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015031427	ResIII	PF04851.15	2.7e-11	1	1
ENSSFOP00015031427	DEAD	PF00270.29	5.5e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015031779	-	5356	XM_018730779	ENSSFOP00015031427	1503 (aa)	XP_018586295	A0A1W4YCX7

Gene Model

Click here to download ENSSFOG00015020129's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015020129's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015020129	hfm1	55	30.759	ENSSFOG00015018826	snrnp200	73	30.759
ENSSFOG00015020129	hfm1	52	31.765	ENSSFOG00015010273	ascc3	61	31.765

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015020129	hfm1	96	56.701	ENSG00000162669	HFM1	86	56.701	Homo_sapiens
ENSSFOG00015020129	hfm1	59	73.981	ENSAPOG00000005304	hfm1	100	73.981	Acanthochromis_polyacanthus
ENSSFOG00015020129	hfm1	93	57.325	ENSAMEG00000000432	HFM1	85	57.325	Ailuropoda_melanoleuca
ENSSFOG00015020129	hfm1	67	66.238	ENSACIG00000021553	hfm1	88	66.238	Amphilophus_citrinellus
ENSSFOG00015020129	hfm1	59	75.000	ENSAOCG00000022839	hfm1	100	75.000	Amphiprion_ocellaris
ENSSFOG00015020129	hfm1	59	74.760	ENSAPEG00000014316	hfm1	100	74.760	Amphiprion_percula
ENSSFOG00015020129	hfm1	83	62.441	ENSATEG00000019181	hfm1	99	62.441	Anabas_testudineus
ENSSFOG00015020129	hfm1	66	65.065	ENSAPLG00000013639	HFM1	68	65.065	Anas_platyrhynchos
ENSSFOG00015020129	hfm1	96	55.503	ENSANAG00000029513	HFM1	86	55.503	Aotus_nancymaae
ENSSFOG00015020129	hfm1	63	68.349	ENSACLG00000009033	hfm1	97	71.938	Astatotilapia_calliptera
ENSSFOG00015020129	hfm1	100	58.213	ENSAMXG00000006108	hfm1	100	58.213	Astyanax_mexicanus
ENSSFOG00015020129	hfm1	100	50.844	ENSBTAG00000020856	HFM1	86	57.245	Bos_taurus
ENSSFOG00015020129	hfm1	83	55.984	ENSCJAG00000001843	HFM1	86	55.906	Callithrix_jacchus
ENSSFOG00015020129	hfm1	93	55.994	ENSCAFG00000020187	HFM1	93	52.635	Canis_familiaris
ENSSFOG00015020129	hfm1	82	56.235	ENSTSYG00000014250	HFM1	86	56.235	Carlito_syrichta
ENSSFOG00015020129	hfm1	82	55.775	ENSCPOG00000007421	HFM1	87	55.943	Cavia_porcellus
ENSSFOG00015020129	hfm1	96	55.889	ENSCCAG00000033206	HFM1	86	55.889	Cebus_capucinus
ENSSFOG00015020129	hfm1	83	56.701	ENSCATG00000030987	HFM1	86	56.701	Cercocebus_atys
ENSSFOG00015020129	hfm1	100	50.065	ENSCLAG00000005173	HFM1	99	50.065	Chinchilla_lanigera
ENSSFOG00015020129	hfm1	63	61.416	ENSCGRG00001016995	Hfm1	67	61.192	Cricetulus_griseus_chok1gshd
ENSSFOG00015020129	hfm1	82	54.714	ENSCGRG00000017181	Hfm1	85	54.596	Cricetulus_griseus_crigri
ENSSFOG00015020129	hfm1	63	71.698	ENSCSEG00000017659	hfm1	87	71.399	Cynoglossus_semilaevis
ENSSFOG00015020129	hfm1	74	64.510	ENSDARG00000104288	hfm1	99	64.510	Danio_rerio
ENSSFOG00015020129	hfm1	100	49.679	ENSDNOG00000004776	HFM1	100	49.679	Dasypus_novemcinctus
ENSSFOG00015020129	hfm1	82	54.027	ENSDORG00000014661	Hfm1	85	54.027	Dipodomys_ordii
ENSSFOG00015020129	hfm1	64	63.430	ENSEASG00005015424	HFM1	90	63.430	Equus_asinus_asinus
ENSSFOG00015020129	hfm1	100	51.127	ENSECAG00000024039	HFM1	100	50.998	Equus_caballus
ENSSFOG00015020129	hfm1	61	76.905	ENSELUG00000018944	hfm1	99	76.905	Esox_lucius
ENSSFOG00015020129	hfm1	100	49.258	ENSFCAG00000029116	HFM1	100	49.451	Felis_catus
ENSSFOG00015020129	hfm1	66	64.371	ENSFALG00000001781	HFM1	85	54.988	Ficedula_albicollis
ENSSFOG00015020129	hfm1	84	55.684	ENSFDAG00000020816	HFM1	83	55.684	Fukomys_damarensis
ENSSFOG00015020129	hfm1	65	69.152	ENSGMOG00000017436	hfm1	100	69.152	Gadus_morhua
ENSSFOG00015020129	hfm1	61	72.662	ENSGAFG00000018093	hfm1	100	72.662	Gambusia_affinis
ENSSFOG00015020129	hfm1	65	68.814	ENSGACG00000015686	hfm1	100	68.814	Gasterosteus_aculeatus
ENSSFOG00015020129	hfm1	96	56.577	ENSGGOG00000038524	HFM1	86	56.577	Gorilla_gorilla
ENSSFOG00015020129	hfm1	63	70.168	ENSHBUG00000007309	hfm1	86	70.168	Haplochromis_burtoni
ENSSFOG00015020129	hfm1	54	72.025	ENSHCOG00000019632	hfm1	97	72.025	Hippocampus_comes
ENSSFOG00015020129	hfm1	63	74.738	ENSIPUG00000017020	hfm1	99	76.643	Ictalurus_punctatus
ENSSFOG00015020129	hfm1	82	55.068	ENSJJAG00000017198	Hfm1	88	55.068	Jaculus_jaculus
ENSSFOG00015020129	hfm1	61	69.239	ENSKMAG00000002282	hfm1	91	69.239	Kryptolebias_marmoratus
ENSSFOG00015020129	hfm1	65	69.530	ENSLBEG00000006759	hfm1	97	73.846	Labrus_bergylta
ENSSFOG00015020129	hfm1	65	67.683	ENSLACG00000010698	HFM1	91	67.683	Latimeria_chalumnae
ENSSFOG00015020129	hfm1	68	72.963	ENSLOCG00000004931	hfm1	95	72.963	Lepisosteus_oculatus
ENSSFOG00015020129	hfm1	83	54.502	ENSMFAG00000003649	HFM1	86	54.502	Macaca_fascicularis
ENSSFOG00015020129	hfm1	83	56.701	ENSMMUG00000006819	HFM1	86	56.701	Macaca_mulatta
ENSSFOG00015020129	hfm1	52	78.691	ENSMAMG00000004623	hfm1	91	85.000	Mastacembelus_armatus
ENSSFOG00015020129	hfm1	63	68.349	ENSMZEG00005004679	hfm1	97	71.938	Maylandia_zebra
ENSSFOG00015020129	hfm1	52	67.821	ENSMGAG00000008437	HFM1	97	67.821	Meleagris_gallopavo
ENSSFOG00015020129	hfm1	82	55.359	ENSMAUG00000018858	Hfm1	85	55.236	Mesocricetus_auratus
ENSSFOG00015020129	hfm1	82	56.165	ENSMICG00000037935	HFM1	85	56.165	Microcebus_murinus
ENSSFOG00015020129	hfm1	66	63.153	ENSMOCG00000014812	Hfm1	68	62.948	Microtus_ochrogaster
ENSSFOG00015020129	hfm1	62	72.865	ENSMMOG00000006148	hfm1	100	72.865	Mola_mola
ENSSFOG00015020129	hfm1	59	78.721	ENSMALG00000002401	hfm1	100	74.940	Monopterus_albus
ENSSFOG00015020129	hfm1	95	48.708	MGP_CAROLIEiJ_G0027496	Hfm1	82	58.250	Mus_caroli
ENSSFOG00015020129	hfm1	100	48.375	ENSMUSG00000043410	Hfm1	100	42.043	Mus_musculus
ENSSFOG00015020129	hfm1	100	49.060	MGP_PahariEiJ_G0017268	Hfm1	100	41.646	Mus_pahari
ENSSFOG00015020129	hfm1	100	47.238	MGP_SPRETEiJ_G0028495	Hfm1	100	42.518	Mus_spretus
ENSSFOG00015020129	hfm1	100	51.069	ENSMPUG00000004594	HFM1	100	51.069	Mustela_putorius_furo
ENSSFOG00015020129	hfm1	82	56.463	ENSMLUG00000010200	HFM1	85	56.463	Myotis_lucifugus
ENSSFOG00015020129	hfm1	63	65.861	ENSNBRG00000002910	hfm1	97	72.694	Neolamprologus_brichardi
ENSSFOG00015020129	hfm1	97	54.272	ENSNLEG00000010285	HFM1	86	54.272	Nomascus_leucogenys
ENSSFOG00015020129	hfm1	60	61.833	ENSMEUG00000015788	HFM1	62	61.148	Notamacropus_eugenii
ENSSFOG00015020129	hfm1	57	62.674	ENSOPRG00000013916	HFM1	60	62.674	Ochotona_princeps
ENSSFOG00015020129	hfm1	67	71.229	ENSONIG00000010590	hfm1	94	71.229	Oreochromis_niloticus
ENSSFOG00015020129	hfm1	54	72.044	ENSORLG00000026844	hfm1	99	72.044	Oryzias_latipes
ENSSFOG00015020129	hfm1	82	53.852	ENSORLG00020002951	hfm1	97	53.163	Oryzias_latipes_hni
ENSSFOG00015020129	hfm1	91	56.647	ENSOMEG00000016474	hfm1	85	59.294	Oryzias_melastigma
ENSSFOG00015020129	hfm1	82	56.714	ENSOGAG00000032369	HFM1	99	56.714	Otolemur_garnettii
ENSSFOG00015020129	hfm1	100	50.161	ENSOARG00000015812	HFM1	100	50.096	Ovis_aries
ENSSFOG00015020129	hfm1	83	56.860	ENSPPAG00000024582	HFM1	93	56.860	Pan_paniscus
ENSSFOG00015020129	hfm1	100	49.645	ENSPPRG00000003270	HFM1	100	49.710	Panthera_pardus
ENSSFOG00015020129	hfm1	100	49.580	ENSPTIG00000018881	HFM1	100	49.580	Panthera_tigris_altaica
ENSSFOG00015020129	hfm1	93	56.983	ENSPTRG00000000948	HFM1	85	56.983	Pan_troglodytes
ENSSFOG00015020129	hfm1	100	50.130	ENSPANG00000009838	HFM1	86	56.622	Papio_anubis
ENSSFOG00015020129	hfm1	70	80.418	ENSPKIG00000003810	hfm1	96	81.325	Paramormyrops_kingsleyae
ENSSFOG00015020129	hfm1	55	72.397	ENSPMGG00000011059	hfm1	100	72.397	Periophthalmus_magnuspinnatus
ENSSFOG00015020129	hfm1	100	48.260	ENSPEMG00000022852	Hfm1	85	54.805	Peromyscus_maniculatus_bairdii
ENSSFOG00015020129	hfm1	84	56.016	ENSPCIG00000014233	HFM1	83	56.016	Phascolarctos_cinereus
ENSSFOG00015020129	hfm1	65	70.408	ENSPFOG00000017194	hfm1	92	70.408	Poecilia_formosa
ENSSFOG00015020129	hfm1	64	71.757	ENSPLAG00000000571	hfm1	85	71.757	Poecilia_latipinna
ENSSFOG00015020129	hfm1	64	71.130	ENSPMEG00000019475	hfm1	86	71.130	Poecilia_mexicana
ENSSFOG00015020129	hfm1	64	70.968	ENSPREG00000007803	hfm1	100	73.109	Poecilia_reticulata
ENSSFOG00015020129	hfm1	96	56.463	ENSPPYG00000001163	HFM1	86	56.463	Pongo_abelii
ENSSFOG00015020129	hfm1	66	59.218	ENSPVAG00000009713	HFM1	69	59.218	Pteropus_vampyrus
ENSSFOG00015020129	hfm1	63	68.139	ENSPNYG00000001795	hfm1	97	71.819	Pundamilia_nyererei
ENSSFOG00015020129	hfm1	63	75.858	ENSPNAG00000010865	hfm1	95	75.858	Pygocentrus_nattereri
ENSSFOG00015020129	hfm1	67	63.310	ENSRNOG00000023299	Hfm1	68	63.310	Rattus_norvegicus
ENSSFOG00015020129	hfm1	83	56.463	ENSRROG00000045569	HFM1	86	56.463	Rhinopithecus_roxellana
ENSSFOG00015020129	hfm1	83	56.260	ENSSBOG00000027456	HFM1	87	56.260	Saimiri_boliviensis_boliviensis
ENSSFOG00015020129	hfm1	56	56.128	ENSSHAG00000014616	-	98	56.128	Sarcophilus_harrisii
ENSSFOG00015020129	hfm1	61	72.568	ENSSMAG00000006907	hfm1	87	72.568	Scophthalmus_maximus
ENSSFOG00015020129	hfm1	59	74.818	ENSSDUG00000011424	hfm1	99	74.818	Seriola_dumerili
ENSSFOG00015020129	hfm1	60	74.910	ENSSLDG00000016386	hfm1	100	74.910	Seriola_lalandi_dorsalis
ENSSFOG00015020129	hfm1	59	75.000	ENSSPAG00000001023	hfm1	100	75.000	Stegastes_partitus
ENSSFOG00015020129	hfm1	100	50.616	ENSSSCG00000006912	HFM1	100	50.616	Sus_scrofa
ENSSFOG00015020129	hfm1	65	65.341	ENSTGUG00000006172	HFM1	100	65.341	Taeniopygia_guttata
ENSSFOG00015020129	hfm1	91	52.920	ENSTTRG00000013933	HFM1	86	56.584	Tursiops_truncatus
ENSSFOG00015020129	hfm1	81	61.465	ENSVPAG00000011331	HFM1	71	61.465	Vicugna_pacos
ENSSFOG00015020129	hfm1	74	58.146	ENSVVUG00000020760	HFM1	91	63.120	Vulpes_vulpes
ENSSFOG00015020129	hfm1	60	73.583	ENSXMAG00000004178	hfm1	100	73.583	Xiphophorus_maculatus