EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015021067 (Gene tree)
Gene ID: 108930554
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 2242 bases
Position: chrKV410925.1:1524413-1526654
Accession: 108930554
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015032981	LSM	PF01423.22	1.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015033345	-	586	XM_018745843	ENSSFOP00015032981	141 (aa)	XP_018601359	A0A1W4ZCA5

Gene Model

Click here to download ENSSFOG00015021067's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03018	RNA degradation	KEGG
sfm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015021067's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015021067	lsm4	69	32.000	ENSSFOG00015006734	lsm2	100	32.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015021067	lsm4	99	75.540	ENSG00000130520	LSM4	99	80.292	Homo_sapiens
ENSSFOG00015021067	lsm4	100	84.868	ENSAPOG00000005643	lsm4	100	84.868	Acanthochromis_polyacanthus
ENSSFOG00015021067	lsm4	62	98.851	ENSAMEG00000011162	LSM4	93	80.147	Ailuropoda_melanoleuca
ENSSFOG00015021067	lsm4	100	86.577	ENSAOCG00000006414	lsm4	100	86.577	Amphiprion_ocellaris
ENSSFOG00015021067	lsm4	100	86.000	ENSAPEG00000006238	lsm4	100	86.000	Amphiprion_percula
ENSSFOG00015021067	lsm4	100	84.314	ENSATEG00000016559	lsm4	100	84.967	Anabas_testudineus
ENSSFOG00015021067	lsm4	62	98.864	ENSANAG00000034659	LSM4	99	80.292	Aotus_nancymaae
ENSSFOG00015021067	lsm4	100	85.811	ENSACLG00000022738	lsm4	100	86.486	Astatotilapia_calliptera
ENSSFOG00015021067	lsm4	100	94.366	ENSAMXG00000016932	lsm4	100	94.366	Astyanax_mexicanus
ENSSFOG00015021067	lsm4	62	98.864	ENSBTAG00000008578	LSM4	99	80.292	Bos_taurus
ENSSFOG00015021067	lsm4	59	75.904	WBGene00003078	lsm-4	81	68.000	Caenorhabditis_elegans
ENSSFOG00015021067	lsm4	62	98.864	ENSCJAG00000014171	LSM4	99	80.292	Callithrix_jacchus
ENSSFOG00015021067	lsm4	62	98.864	ENSCAFG00000014900	LSM4	90	80.292	Canis_familiaris
ENSSFOG00015021067	lsm4	62	98.864	ENSCAFG00020012137	LSM4	99	80.292	Canis_lupus_dingo
ENSSFOG00015021067	lsm4	62	98.851	ENSCHIG00000010928	LSM4	90	80.147	Capra_hircus
ENSSFOG00015021067	lsm4	62	97.727	ENSTSYG00000030906	LSM4	99	79.562	Carlito_syrichta
ENSSFOG00015021067	lsm4	62	97.727	ENSCAPG00000014140	LSM4	96	80.597	Cavia_aperea
ENSSFOG00015021067	lsm4	62	97.727	ENSCPOG00000024117	LSM4	96	80.597	Cavia_porcellus
ENSSFOG00015021067	lsm4	62	98.864	ENSCCAG00000036308	LSM4	99	80.292	Cebus_capucinus
ENSSFOG00015021067	lsm4	98	74.638	ENSCATG00000029311	LSM4	99	80.292	Cercocebus_atys
ENSSFOG00015021067	lsm4	62	98.864	ENSCLAG00000010828	LSM4	99	79.562	Chinchilla_lanigera
ENSSFOG00015021067	lsm4	62	98.864	ENSCSAG00000005370	LSM4	99	80.292	Chlorocebus_sabaeus
ENSSFOG00015021067	lsm4	94	90.977	ENSCPBG00000012925	LSM4	96	90.977	Chrysemys_picta_bellii
ENSSFOG00015021067	lsm4	61	93.023	ENSCING00000007519	-	72	92.391	Ciona_intestinalis
ENSSFOG00015021067	lsm4	61	93.023	ENSCSAVG00000008596	-	74	92.391	Ciona_savignyi
ENSSFOG00015021067	lsm4	62	98.864	ENSCANG00000043686	LSM4	99	80.292	Colobus_angolensis_palliatus
ENSSFOG00015021067	lsm4	62	95.455	ENSCGRG00001014436	Lsm4	99	78.832	Cricetulus_griseus_chok1gshd
ENSSFOG00015021067	lsm4	62	95.402	ENSCGRG00000009398	Lsm4	99	78.676	Cricetulus_griseus_crigri
ENSSFOG00015021067	lsm4	100	83.803	ENSCSEG00000016127	lsm4	100	91.608	Cynoglossus_semilaevis
ENSSFOG00015021067	lsm4	100	90.972	ENSCVAG00000010601	lsm4	100	90.972	Cyprinodon_variegatus
ENSSFOG00015021067	lsm4	89	89.922	ENSCVAG00000021828	lsm4	98	89.922	Cyprinodon_variegatus
ENSSFOG00015021067	lsm4	96	90.141	ENSDARG00000023852	lsm4	99	89.437	Danio_rerio
ENSSFOG00015021067	lsm4	62	97.727	ENSDORG00000024225	Lsm4	99	78.832	Dipodomys_ordii
ENSSFOG00015021067	lsm4	69	82.474	FBgn0032240	CG17768	63	82.474	Drosophila_melanogaster
ENSSFOG00015021067	lsm4	52	97.260	ENSETEG00000007762	-	98	77.869	Echinops_telfairi
ENSSFOG00015021067	lsm4	57	88.750	ENSEBUG00000003639	-	63	78.947	Eptatretus_burgeri
ENSSFOG00015021067	lsm4	62	98.864	ENSECAG00000010141	LSM4	56	80.576	Equus_caballus
ENSSFOG00015021067	lsm4	93	89.474	ENSELUG00000012821	lsm4	100	89.474	Esox_lucius
ENSSFOG00015021067	lsm4	62	98.864	ENSFCAG00000040580	LSM4	99	80.292	Felis_catus
ENSSFOG00015021067	lsm4	94	90.152	ENSFALG00000009478	LSM4	96	90.152	Ficedula_albicollis
ENSSFOG00015021067	lsm4	62	98.851	ENSFDAG00000010124	LSM4	99	80.147	Fukomys_damarensis
ENSSFOG00015021067	lsm4	99	84.354	ENSGMOG00000007729	lsm4	99	80.952	Gadus_morhua
ENSSFOG00015021067	lsm4	94	90.226	ENSGALG00000003385	LSM4	96	90.226	Gallus_gallus
ENSSFOG00015021067	lsm4	100	89.583	ENSGAFG00000004903	lsm4	97	86.822	Gambusia_affinis
ENSSFOG00015021067	lsm4	100	84.000	ENSGACG00000008140	lsm4	100	84.000	Gasterosteus_aculeatus
ENSSFOG00015021067	lsm4	94	90.977	ENSGAGG00000017812	LSM4	96	90.977	Gopherus_agassizii
ENSSFOG00015021067	lsm4	99	75.540	ENSGGOG00000012914	-	99	80.292	Gorilla_gorilla
ENSSFOG00015021067	lsm4	100	86.395	ENSHBUG00000008858	lsm4	80	87.075	Haplochromis_burtoni
ENSSFOG00015021067	lsm4	98	78.417	ENSHGLG00000006568	LSM4	99	78.832	Heterocephalus_glaber_female
ENSSFOG00015021067	lsm4	66	97.849	ENSHGLG00100007894	LSM4	100	97.849	Heterocephalus_glaber_male
ENSSFOG00015021067	lsm4	100	90.909	ENSHCOG00000008819	lsm4	100	90.909	Hippocampus_comes
ENSSFOG00015021067	lsm4	100	95.775	ENSIPUG00000005368	Lsm4	100	95.775	Ictalurus_punctatus
ENSSFOG00015021067	lsm4	62	98.864	ENSSTOG00000016494	LSM4	99	80.292	Ictidomys_tridecemlineatus
ENSSFOG00015021067	lsm4	62	96.591	ENSJJAG00000017420	Lsm4	99	78.832	Jaculus_jaculus
ENSSFOG00015021067	lsm4	100	86.897	ENSKMAG00000005073	lsm4	100	89.655	Kryptolebias_marmoratus
ENSSFOG00015021067	lsm4	100	86.000	ENSLBEG00000027930	lsm4	100	86.000	Labrus_bergylta
ENSSFOG00015021067	lsm4	98	84.892	ENSLACG00000015861	LSM4	99	89.928	Latimeria_chalumnae
ENSSFOG00015021067	lsm4	100	95.035	ENSLOCG00000002025	lsm4	100	95.035	Lepisosteus_oculatus
ENSSFOG00015021067	lsm4	62	97.701	ENSLAFG00000017459	LSM4	98	80.147	Loxodonta_africana
ENSSFOG00015021067	lsm4	62	98.864	ENSMFAG00000031194	LSM4	99	80.292	Macaca_fascicularis
ENSSFOG00015021067	lsm4	62	98.864	ENSMMUG00000004405	LSM4	99	80.292	Macaca_mulatta
ENSSFOG00015021067	lsm4	62	98.864	ENSMNEG00000042899	LSM4	99	80.292	Macaca_nemestrina
ENSSFOG00015021067	lsm4	98	74.638	ENSMLEG00000027948	LSM4	99	80.292	Mandrillus_leucophaeus
ENSSFOG00015021067	lsm4	100	89.510	ENSMAMG00000006190	lsm4	100	89.510	Mastacembelus_armatus
ENSSFOG00015021067	lsm4	100	86.395	ENSMZEG00005016420	lsm4	100	87.075	Maylandia_zebra
ENSSFOG00015021067	lsm4	94	83.459	ENSMGAG00000004976	LSM4	96	87.970	Meleagris_gallopavo
ENSSFOG00015021067	lsm4	71	94.000	ENSMICG00000000222	LSM4	99	79.562	Microcebus_murinus
ENSSFOG00015021067	lsm4	62	95.455	ENSMOCG00000020861	Lsm4	99	78.832	Microtus_ochrogaster
ENSSFOG00015021067	lsm4	52	100.000	ENSMODG00000015044	-	98	79.508	Monodelphis_domestica
ENSSFOG00015021067	lsm4	100	89.583	ENSMALG00000018159	lsm4	100	89.583	Monopterus_albus
ENSSFOG00015021067	lsm4	62	95.455	MGP_CAROLIEiJ_G0031158	Lsm4	99	78.832	Mus_caroli
ENSSFOG00015021067	lsm4	62	95.455	ENSMUSG00000031848	Lsm4	97	86.000	Mus_musculus
ENSSFOG00015021067	lsm4	62	95.455	MGP_PahariEiJ_G0021623	Lsm4	99	78.832	Mus_pahari
ENSSFOG00015021067	lsm4	62	95.455	MGP_SPRETEiJ_G0032276	Lsm4	99	78.832	Mus_spretus
ENSSFOG00015021067	lsm4	62	98.864	ENSMPUG00000015589	LSM4	99	80.292	Mustela_putorius_furo
ENSSFOG00015021067	lsm4	62	98.851	ENSMLUG00000004010	LSM4	98	80.147	Myotis_lucifugus
ENSSFOG00015021067	lsm4	62	95.455	ENSNGAG00000008644	Lsm4	99	78.832	Nannospalax_galili
ENSSFOG00015021067	lsm4	77	95.413	ENSNBRG00000022150	lsm4	67	95.413	Neolamprologus_brichardi
ENSSFOG00015021067	lsm4	87	80.645	ENSMEUG00000013229	LSM4	98	75.410	Notamacropus_eugenii
ENSSFOG00015021067	lsm4	55	96.154	ENSOPRG00000005575	LSM4	98	75.207	Ochotona_princeps
ENSSFOG00015021067	lsm4	96	63.768	ENSODEG00000011712	-	98	63.768	Octodon_degus
ENSSFOG00015021067	lsm4	62	98.864	ENSODEG00000020549	-	99	79.562	Octodon_degus
ENSSFOG00015021067	lsm4	98	73.913	ENSODEG00000004519	-	99	72.794	Octodon_degus
ENSSFOG00015021067	lsm4	100	85.811	ENSONIG00000012724	lsm4	100	86.486	Oreochromis_niloticus
ENSSFOG00015021067	lsm4	62	94.505	ENSOANG00000007434	LSM4	89	92.233	Ornithorhynchus_anatinus
ENSSFOG00015021067	lsm4	100	88.276	ENSORLG00000008391	lsm4	100	88.276	Oryzias_latipes
ENSSFOG00015021067	lsm4	100	88.276	ENSORLG00020014829	lsm4	100	88.276	Oryzias_latipes_hni
ENSSFOG00015021067	lsm4	100	87.586	ENSORLG00015010205	lsm4	100	87.586	Oryzias_latipes_hsok
ENSSFOG00015021067	lsm4	100	87.586	ENSOMEG00000003606	lsm4	100	87.586	Oryzias_melastigma
ENSSFOG00015021067	lsm4	70	93.939	ENSOGAG00000027992	LSM4	94	78.102	Otolemur_garnettii
ENSSFOG00015021067	lsm4	62	98.851	ENSOARG00000012553	LSM4	95	79.339	Ovis_aries
ENSSFOG00015021067	lsm4	98	76.087	ENSPPAG00000044045	-	99	80.292	Pan_paniscus
ENSSFOG00015021067	lsm4	62	98.864	ENSPPRG00000018264	LSM4	99	80.292	Panthera_pardus
ENSSFOG00015021067	lsm4	62	98.851	ENSPTIG00000006306	LSM4	99	80.147	Panthera_tigris_altaica
ENSSFOG00015021067	lsm4	98	76.087	ENSPTRG00000031470	LSM4	99	80.292	Pan_troglodytes
ENSSFOG00015021067	lsm4	62	98.864	ENSPANG00000014399	LSM4	99	80.292	Papio_anubis
ENSSFOG00015021067	lsm4	100	97.163	ENSPKIG00000006154	lsm4	100	97.163	Paramormyrops_kingsleyae
ENSSFOG00015021067	lsm4	94	90.152	ENSPSIG00000012358	LSM4	96	90.152	Pelodiscus_sinensis
ENSSFOG00015021067	lsm4	62	95.455	ENSPEMG00000001358	Lsm4	99	78.832	Peromyscus_maniculatus_bairdii
ENSSFOG00015021067	lsm4	100	89.583	ENSPFOG00000000570	lsm4	76	89.583	Poecilia_formosa
ENSSFOG00015021067	lsm4	100	90.972	ENSPLAG00000016267	lsm4	100	89.583	Poecilia_latipinna
ENSSFOG00015021067	lsm4	100	89.583	ENSPMEG00000016378	lsm4	100	89.583	Poecilia_mexicana
ENSSFOG00015021067	lsm4	100	90.278	ENSPREG00000011290	lsm4	76	90.278	Poecilia_reticulata
ENSSFOG00015021067	lsm4	62	98.864	ENSPPYG00000009736	LSM4	99	80.292	Pongo_abelii
ENSSFOG00015021067	lsm4	52	97.260	ENSPCAG00000008513	LSM4	98	77.869	Procavia_capensis
ENSSFOG00015021067	lsm4	71	94.000	ENSPCOG00000019837	LSM4	99	79.562	Propithecus_coquereli
ENSSFOG00015021067	lsm4	62	98.864	ENSPVAG00000015383	LSM4	99	80.292	Pteropus_vampyrus
ENSSFOG00015021067	lsm4	100	86.395	ENSPNYG00000016794	lsm4	100	87.075	Pundamilia_nyererei
ENSSFOG00015021067	lsm4	95	95.556	ENSPNAG00000016598	lsm4	100	95.556	Pygocentrus_nattereri
ENSSFOG00015021067	lsm4	62	95.455	ENSRNOG00000019572	Lsm4	99	78.832	Rattus_norvegicus
ENSSFOG00015021067	lsm4	62	98.864	ENSRBIG00000024717	LSM4	99	80.292	Rhinopithecus_bieti
ENSSFOG00015021067	lsm4	98	75.362	ENSRROG00000045706	LSM4	99	80.292	Rhinopithecus_roxellana
ENSSFOG00015021067	lsm4	59	40.860	YER112W	LSM4	52	40.206	Saccharomyces_cerevisiae
ENSSFOG00015021067	lsm4	52	98.649	ENSSBOG00000022455	LSM4	98	78.049	Saimiri_boliviensis_boliviensis
ENSSFOG00015021067	lsm4	62	100.000	ENSSHAG00000011559	LSM4	99	81.752	Sarcophilus_harrisii
ENSSFOG00015021067	lsm4	100	77.333	ENSSMAG00000021020	lsm4	100	81.333	Scophthalmus_maximus
ENSSFOG00015021067	lsm4	100	77.381	ENSSDUG00000009588	lsm4	100	77.381	Seriola_dumerili
ENSSFOG00015021067	lsm4	100	75.740	ENSSLDG00000006827	lsm4	100	76.923	Seriola_lalandi_dorsalis
ENSSFOG00015021067	lsm4	62	100.000	ENSSPUG00000010166	LSM4	64	96.970	Sphenodon_punctatus
ENSSFOG00015021067	lsm4	100	84.868	ENSSPAG00000011615	lsm4	100	84.868	Stegastes_partitus
ENSSFOG00015021067	lsm4	62	98.864	ENSSSCG00000034314	LSM4	99	80.292	Sus_scrofa
ENSSFOG00015021067	lsm4	100	87.500	ENSTRUG00000021737	lsm4	100	87.500	Takifugu_rubripes
ENSSFOG00015021067	lsm4	100	88.194	ENSTNIG00000010191	lsm4	100	88.194	Tetraodon_nigroviridis
ENSSFOG00015021067	lsm4	62	98.864	ENSUAMG00000000665	LSM4	98	80.147	Ursus_americanus
ENSSFOG00015021067	lsm4	62	98.864	ENSUMAG00000009013	LSM4	99	80.292	Ursus_maritimus
ENSSFOG00015021067	lsm4	62	98.851	ENSVVUG00000008136	LSM4	70	80.147	Vulpes_vulpes
ENSSFOG00015021067	lsm4	96	88.235	ENSXETG00000024933	lsm4	99	88.235	Xenopus_tropicalis
ENSSFOG00015021067	lsm4	100	89.583	ENSXMAG00000026672	lsm4	76	89.583	Xiphophorus_maculatus