EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015021095 (Gene tree)
Gene ID: 108930585
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 14626 bases
Position: chrKV410925.1:1542574-1557199
Accession: 108930585
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015033081	UPF1_Zn_bind	PF09416.10	7.7e-75	1	1
ENSSFOP00015033056	UPF1_Zn_bind	PF09416.10	8.6e-75	1	1
ENSSFOP00015033081	ResIII	PF04851.15	2.9e-05	1	1
ENSSFOP00015033056	ResIII	PF04851.15	3.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015033420	-	3523	XM_018745903	ENSSFOP00015033056	1101 (aa)	XP_018601419	A0A1W4ZCG4
ENSSFOT00015033445	-	3223	XM_018745906	ENSSFOP00015033081	1045 (aa)	XP_018601422	-

Gene Model

Click here to download ENSSFOG00015021095's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03013	RNA transport	KEGG
sfm03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015021095's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015021095	upf1	99	97.214	ENSG00000005007	UPF1	100	94.826	Homo_sapiens
ENSSFOG00015021095	upf1	100	94.033	ENSAPOG00000023773	upf1	100	93.852	Acanthochromis_polyacanthus
ENSSFOG00015021095	upf1	100	95.644	ENSAPOG00000010916	-	100	95.644	Acanthochromis_polyacanthus
ENSSFOG00015021095	upf1	99	96.300	ENSAMEG00000011474	UPF1	100	94.494	Ailuropoda_melanoleuca
ENSSFOG00015021095	upf1	98	94.932	ENSACIG00000010985	-	100	94.834	Amphilophus_citrinellus
ENSSFOG00015021095	upf1	100	94.107	ENSACIG00000019949	upf1	100	94.096	Amphilophus_citrinellus
ENSSFOG00015021095	upf1	100	95.735	ENSAOCG00000006352	-	100	95.735	Amphiprion_ocellaris
ENSSFOG00015021095	upf1	100	93.460	ENSAOCG00000018519	upf1	100	93.638	Amphiprion_ocellaris
ENSSFOG00015021095	upf1	100	95.735	ENSAPEG00000006292	-	100	95.735	Amphiprion_percula
ENSSFOG00015021095	upf1	100	93.460	ENSAPEG00000016344	upf1	100	93.638	Amphiprion_percula
ENSSFOG00015021095	upf1	100	92.616	ENSATEG00000017867	upf1	100	93.470	Anabas_testudineus
ENSSFOG00015021095	upf1	100	95.735	ENSATEG00000016606	-	100	95.735	Anabas_testudineus
ENSSFOG00015021095	upf1	99	96.679	ENSAPLG00000009175	UPF1	100	96.777	Anas_platyrhynchos
ENSSFOG00015021095	upf1	99	94.867	ENSANAG00000024107	UPF1	96	94.423	Aotus_nancymaae
ENSSFOG00015021095	upf1	100	93.835	ENSACLG00000007181	upf1	100	93.824	Astatotilapia_calliptera
ENSSFOG00015021095	upf1	100	95.459	ENSACLG00000022630	-	100	95.459	Astatotilapia_calliptera
ENSSFOG00015021095	upf1	100	97.368	ENSAMXG00000042187	upf1	100	97.368	Astyanax_mexicanus
ENSSFOG00015021095	upf1	99	96.300	ENSBTAG00000020922	UPF1	100	94.504	Bos_taurus
ENSSFOG00015021095	upf1	80	56.604	WBGene00004880	smg-2	83	54.586	Caenorhabditis_elegans
ENSSFOG00015021095	upf1	99	96.198	ENSCJAG00000019627	UPF1	100	94.076	Callithrix_jacchus
ENSSFOG00015021095	upf1	99	96.300	ENSCAFG00000014578	UPF1	100	94.253	Canis_familiaris
ENSSFOG00015021095	upf1	99	97.315	ENSCAFG00020012347	UPF1	100	95.004	Canis_lupus_dingo
ENSSFOG00015021095	upf1	99	97.315	ENSCHIG00000011018	UPF1	100	95.259	Capra_hircus
ENSSFOG00015021095	upf1	99	96.008	ENSTSYG00000008877	UPF1	98	96.103	Carlito_syrichta
ENSSFOG00015021095	upf1	99	96.008	ENSCAPG00000005758	UPF1	96	95.395	Cavia_aperea
ENSSFOG00015021095	upf1	100	95.234	ENSCPOG00000025463	UPF1	100	95.234	Cavia_porcellus
ENSSFOG00015021095	upf1	99	97.214	ENSCCAG00000032175	UPF1	100	94.826	Cebus_capucinus
ENSSFOG00015021095	upf1	99	96.282	ENSCATG00000040306	UPF1	98	96.282	Cercocebus_atys
ENSSFOG00015021095	upf1	99	96.198	ENSCLAG00000004037	UPF1	99	96.293	Chinchilla_lanigera
ENSSFOG00015021095	upf1	99	97.214	ENSCSAG00000005276	UPF1	100	94.826	Chlorocebus_sabaeus
ENSSFOG00015021095	upf1	99	97.228	ENSCPBG00000012513	UPF1	100	95.605	Chrysemys_picta_bellii
ENSSFOG00015021095	upf1	77	79.649	ENSCING00000021399	-	99	80.000	Ciona_intestinalis
ENSSFOG00015021095	upf1	99	73.971	ENSCSAVG00000006533	-	99	72.801	Ciona_savignyi
ENSSFOG00015021095	upf1	99	96.198	ENSCANG00000029819	UPF1	97	96.293	Colobus_angolensis_palliatus
ENSSFOG00015021095	upf1	99	96.830	ENSCGRG00001021067	Upf1	100	94.892	Cricetulus_griseus_chok1gshd
ENSSFOG00015021095	upf1	99	95.817	ENSCGRG00000013480	Upf1	98	95.913	Cricetulus_griseus_crigri
ENSSFOG00015021095	upf1	100	88.577	ENSCSEG00000017239	upf1	100	87.939	Cynoglossus_semilaevis
ENSSFOG00015021095	upf1	100	95.281	ENSCSEG00000016159	-	100	94.828	Cynoglossus_semilaevis
ENSSFOG00015021095	upf1	100	95.191	ENSCVAG00000010561	upf1	100	95.191	Cyprinodon_variegatus
ENSSFOG00015021095	upf1	100	97.005	ENSDARG00000016302	upf1	100	97.005	Danio_rerio
ENSSFOG00015021095	upf1	99	93.352	ENSDORG00000009984	Upf1	95	93.352	Dipodomys_ordii
ENSSFOG00015021095	upf1	85	72.611	FBgn0030354	Upf1	84	69.444	Drosophila_melanogaster
ENSSFOG00015021095	upf1	52	90.203	ENSEBUG00000010069	upf1	96	87.294	Eptatretus_burgeri
ENSSFOG00015021095	upf1	99	97.220	ENSEASG00005006549	UPF1	100	95.170	Equus_asinus_asinus
ENSSFOG00015021095	upf1	99	97.220	ENSECAG00000010639	UPF1	100	95.170	Equus_caballus
ENSSFOG00015021095	upf1	100	93.948	ENSELUG00000020917	upf1	100	93.225	Esox_lucius
ENSSFOG00015021095	upf1	100	95.668	ENSELUG00000012916	-	100	95.668	Esox_lucius
ENSSFOG00015021095	upf1	99	96.300	ENSFCAG00000009757	UPF1	100	94.253	Felis_catus
ENSSFOG00015021095	upf1	100	97.235	ENSFALG00000009312	UPF1	96	97.331	Ficedula_albicollis
ENSSFOG00015021095	upf1	99	96.103	ENSFDAG00000014816	UPF1	99	96.198	Fukomys_damarensis
ENSSFOG00015021095	upf1	91	95.025	ENSFHEG00000016276	-	96	95.274	Fundulus_heteroclitus
ENSSFOG00015021095	upf1	100	90.689	ENSFHEG00000006428	upf1	100	89.973	Fundulus_heteroclitus
ENSSFOG00015021095	upf1	100	94.070	ENSGMOG00000007541	upf1	100	93.801	Gadus_morhua
ENSSFOG00015021095	upf1	99	97.699	ENSGALG00000003220	UPF1	100	95.532	Gallus_gallus
ENSSFOG00015021095	upf1	100	95.100	ENSGAFG00000004831	upf1	100	95.100	Gambusia_affinis
ENSSFOG00015021095	upf1	68	93.715	ENSGAFG00000015443	-	88	93.584	Gambusia_affinis
ENSSFOG00015021095	upf1	99	97.507	ENSGAGG00000022217	UPF1	100	96.126	Gopherus_agassizii
ENSSFOG00015021095	upf1	99	97.214	ENSGGOG00000002608	UPF1	99	97.214	Gorilla_gorilla
ENSSFOG00015021095	upf1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSSFOG00015021095	upf1	86	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSSFOG00015021095	upf1	99	95.913	ENSHGLG00000010900	UPF1	100	93.811	Heterocephalus_glaber_female
ENSSFOG00015021095	upf1	99	94.202	ENSHGLG00100005904	UPF1	96	94.202	Heterocephalus_glaber_male
ENSSFOG00015021095	upf1	100	95.195	ENSHCOG00000008918	upf1	100	95.195	Hippocampus_comes
ENSSFOG00015021095	upf1	100	97.368	ENSIPUG00000005108	UPF1	100	97.368	Ictalurus_punctatus
ENSSFOG00015021095	upf1	99	97.214	ENSSTOG00000009196	UPF1	100	94.826	Ictidomys_tridecemlineatus
ENSSFOG00015021095	upf1	99	95.437	ENSJJAG00000023151	Upf1	100	93.950	Jaculus_jaculus
ENSSFOG00015021095	upf1	100	95.372	ENSKMAG00000004962	upf1	100	95.372	Kryptolebias_marmoratus
ENSSFOG00015021095	upf1	100	92.294	ENSLBEG00000014862	upf1	100	93.011	Labrus_bergylta
ENSSFOG00015021095	upf1	100	95.554	ENSLBEG00000027848	-	100	95.554	Labrus_bergylta
ENSSFOG00015021095	upf1	67	97.848	ENSLACG00000008482	UPF1	100	97.848	Latimeria_chalumnae
ENSSFOG00015021095	upf1	100	98.456	ENSLOCG00000002072	upf1	100	98.456	Lepisosteus_oculatus
ENSSFOG00015021095	upf1	99	96.205	ENSLAFG00000014963	UPF1	100	94.331	Loxodonta_africana
ENSSFOG00015021095	upf1	99	96.198	ENSMFAG00000037748	UPF1	100	94.746	Macaca_fascicularis
ENSSFOG00015021095	upf1	99	96.198	ENSMMUG00000023286	UPF1	100	94.494	Macaca_mulatta
ENSSFOG00015021095	upf1	99	96.198	ENSMNEG00000000046	UPF1	100	94.746	Macaca_nemestrina
ENSSFOG00015021095	upf1	99	96.198	ENSMLEG00000028404	UPF1	99	96.293	Mandrillus_leucophaeus
ENSSFOG00015021095	upf1	100	95.463	ENSMAMG00000006231	-	100	95.463	Mastacembelus_armatus
ENSSFOG00015021095	upf1	100	92.576	ENSMAMG00000006229	upf1	100	93.381	Mastacembelus_armatus
ENSSFOG00015021095	upf1	100	92.500	ENSMZEG00005003489	upf1	100	93.531	Maylandia_zebra
ENSSFOG00015021095	upf1	100	95.459	ENSMZEG00005016386	-	100	95.459	Maylandia_zebra
ENSSFOG00015021095	upf1	99	96.201	ENSMGAG00000004745	UPF1	100	96.296	Meleagris_gallopavo
ENSSFOG00015021095	upf1	99	95.817	ENSMAUG00000011398	Upf1	95	95.913	Mesocricetus_auratus
ENSSFOG00015021095	upf1	99	97.118	ENSMICG00000001659	UPF1	100	94.737	Microcebus_murinus
ENSSFOG00015021095	upf1	99	95.817	ENSMOCG00000005699	Upf1	100	94.227	Microtus_ochrogaster
ENSSFOG00015021095	upf1	100	93.117	ENSMMOG00000007537	-	99	93.212	Mola_mola
ENSSFOG00015021095	upf1	100	93.370	ENSMMOG00000007881	upf1	100	93.466	Mola_mola
ENSSFOG00015021095	upf1	99	97.507	ENSMODG00000003689	UPF1	100	94.180	Monodelphis_domestica
ENSSFOG00015021095	upf1	100	94.033	ENSMALG00000018100	-	100	94.033	Monopterus_albus
ENSSFOG00015021095	upf1	100	94.278	ENSMALG00000000144	upf1	100	94.278	Monopterus_albus
ENSSFOG00015021095	upf1	99	96.734	MGP_CAROLIEiJ_G0031142	Upf1	100	94.803	Mus_caroli
ENSSFOG00015021095	upf1	99	96.734	ENSMUSG00000058301	Upf1	100	94.803	Mus_musculus
ENSSFOG00015021095	upf1	99	96.734	MGP_PahariEiJ_G0021607	Upf1	100	94.803	Mus_pahari
ENSSFOG00015021095	upf1	99	96.734	MGP_SPRETEiJ_G0032260	Upf1	100	94.803	Mus_spretus
ENSSFOG00015021095	upf1	99	97.315	ENSMPUG00000015516	UPF1	100	95.004	Mustela_putorius_furo
ENSSFOG00015021095	upf1	100	96.938	ENSMLUG00000012122	UPF1	99	94.808	Myotis_lucifugus
ENSSFOG00015021095	upf1	99	95.913	ENSNGAG00000024107	Upf1	100	93.977	Nannospalax_galili
ENSSFOG00015021095	upf1	98	94.655	ENSNBRG00000022069	-	100	94.655	Neolamprologus_brichardi
ENSSFOG00015021095	upf1	100	91.931	ENSNBRG00000000670	upf1	100	91.916	Neolamprologus_brichardi
ENSSFOG00015021095	upf1	99	90.399	ENSNLEG00000006062	UPF1	99	90.399	Nomascus_leucogenys
ENSSFOG00015021095	upf1	83	91.585	ENSMEUG00000014146	-	83	91.389	Notamacropus_eugenii
ENSSFOG00015021095	upf1	99	89.817	ENSOPRG00000014018	UPF1	99	89.721	Ochotona_princeps
ENSSFOG00015021095	upf1	100	95.230	ENSODEG00000012426	UPF1	100	95.230	Octodon_degus
ENSSFOG00015021095	upf1	100	92.768	ENSONIG00000010452	upf1	100	93.801	Oreochromis_niloticus
ENSSFOG00015021095	upf1	100	95.459	ENSONIG00000012729	-	100	95.459	Oreochromis_niloticus
ENSSFOG00015021095	upf1	100	95.652	ENSOANG00000004568	UPF1	100	94.243	Ornithorhynchus_anatinus
ENSSFOG00015021095	upf1	100	95.554	ENSORLG00000008453	upf1	100	95.554	Oryzias_latipes
ENSSFOG00015021095	upf1	100	95.467	ENSORLG00020014758	upf1	100	95.467	Oryzias_latipes_hni
ENSSFOG00015021095	upf1	100	95.467	ENSORLG00015010165	upf1	100	95.467	Oryzias_latipes_hsok
ENSSFOG00015021095	upf1	100	95.644	ENSOMEG00000003665	upf1	100	95.644	Oryzias_melastigma
ENSSFOG00015021095	upf1	99	97.310	ENSOGAG00000012866	UPF1	100	94.915	Otolemur_garnettii
ENSSFOG00015021095	upf1	96	95.678	ENSOARG00000010739	UPF1	100	93.100	Ovis_aries
ENSSFOG00015021095	upf1	99	96.198	ENSPPAG00000043884	UPF1	96	96.293	Pan_paniscus
ENSSFOG00015021095	upf1	99	96.300	ENSPPRG00000023470	UPF1	100	94.253	Panthera_pardus
ENSSFOG00015021095	upf1	99	95.211	ENSPTIG00000010159	UPF1	100	95.211	Panthera_tigris_altaica
ENSSFOG00015021095	upf1	99	96.198	ENSPTRG00000010721	UPF1	100	94.746	Pan_troglodytes
ENSSFOG00015021095	upf1	99	96.198	ENSPANG00000008847	UPF1	100	94.746	Papio_anubis
ENSSFOG00015021095	upf1	91	98.601	ENSPKIG00000006069	upf1	96	98.601	Paramormyrops_kingsleyae
ENSSFOG00015021095	upf1	73	96.475	ENSPSIG00000009491	UPF1	100	96.475	Pelodiscus_sinensis
ENSSFOG00015021095	upf1	100	91.584	ENSPMGG00000017327	upf1	100	92.036	Periophthalmus_magnuspinnatus
ENSSFOG00015021095	upf1	99	95.817	ENSPEMG00000001085	Upf1	100	94.139	Peromyscus_maniculatus_bairdii
ENSSFOG00015021095	upf1	99	89.800	ENSPMAG00000001206	upf1	100	88.040	Petromyzon_marinus
ENSSFOG00015021095	upf1	99	97.507	ENSPCIG00000006156	UPF1	100	95.357	Phascolarctos_cinereus
ENSSFOG00015021095	upf1	100	91.989	ENSPLAG00000018155	-	100	91.539	Poecilia_latipinna
ENSSFOG00015021095	upf1	100	95.009	ENSPLAG00000016232	-	100	95.009	Poecilia_latipinna
ENSSFOG00015021095	upf1	100	95.100	ENSPMEG00000016319	-	100	95.100	Poecilia_mexicana
ENSSFOG00015021095	upf1	100	92.566	ENSPMEG00000011443	-	100	92.098	Poecilia_mexicana
ENSSFOG00015021095	upf1	100	94.828	ENSPREG00000011247	-	100	94.828	Poecilia_reticulata
ENSSFOG00015021095	upf1	100	92.183	ENSPREG00000009940	upf1	100	91.734	Poecilia_reticulata
ENSSFOG00015021095	upf1	99	90.970	ENSPPYG00000009752	UPF1	100	88.506	Pongo_abelii
ENSSFOG00015021095	upf1	75	99.663	ENSPCAG00000012962	UPF1	76	99.663	Procavia_capensis
ENSSFOG00015021095	upf1	99	96.293	ENSPCOG00000023813	UPF1	100	94.667	Propithecus_coquereli
ENSSFOG00015021095	upf1	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSSFOG00015021095	upf1	100	95.459	ENSPNYG00000016731	-	100	95.459	Pundamilia_nyererei
ENSSFOG00015021095	upf1	100	92.500	ENSPNYG00000003694	upf1	100	93.531	Pundamilia_nyererei
ENSSFOG00015021095	upf1	100	97.278	ENSPNAG00000025614	upf1	100	97.278	Pygocentrus_nattereri
ENSSFOG00015021095	upf1	99	96.734	ENSRNOG00000020134	Upf1	100	94.803	Rattus_norvegicus
ENSSFOG00015021095	upf1	99	93.821	ENSRBIG00000013894	UPF1	98	97.046	Rhinopithecus_bieti
ENSSFOG00015021095	upf1	99	96.198	ENSRROG00000040935	UPF1	98	97.046	Rhinopithecus_roxellana
ENSSFOG00015021095	upf1	78	56.916	YMR080C	NAM7	84	56.916	Saccharomyces_cerevisiae
ENSSFOG00015021095	upf1	99	96.194	ENSSBOG00000023632	UPF1	96	96.289	Saimiri_boliviensis_boliviensis
ENSSFOG00015021095	upf1	99	96.395	ENSSHAG00000010499	UPF1	100	96.490	Sarcophilus_harrisii
ENSSFOG00015021095	upf1	100	91.935	ENSSMAG00000005055	upf1	100	92.563	Scophthalmus_maximus
ENSSFOG00015021095	upf1	100	96.007	ENSSMAG00000021018	-	100	96.007	Scophthalmus_maximus
ENSSFOG00015021095	upf1	100	92.755	ENSSDUG00000013320	upf1	100	93.560	Seriola_dumerili
ENSSFOG00015021095	upf1	100	95.917	ENSSDUG00000009629	-	100	95.917	Seriola_dumerili
ENSSFOG00015021095	upf1	100	93.592	ENSSLDG00000020868	upf1	100	93.868	Seriola_lalandi_dorsalis
ENSSFOG00015021095	upf1	100	95.917	ENSSLDG00000006878	-	100	95.917	Seriola_lalandi_dorsalis
ENSSFOG00015021095	upf1	99	97.411	ENSSPUG00000010538	UPF1	100	95.953	Sphenodon_punctatus
ENSSFOG00015021095	upf1	100	92.029	ENSSPAG00000000003	upf1	100	91.750	Stegastes_partitus
ENSSFOG00015021095	upf1	100	94.828	ENSSPAG00000011521	-	100	95.554	Stegastes_partitus
ENSSFOG00015021095	upf1	99	97.414	ENSSSCG00000039301	UPF1	100	97.414	Sus_scrofa
ENSSFOG00015021095	upf1	81	91.098	ENSTGUG00000001057	UPF1	100	93.935	Taeniopygia_guttata
ENSSFOG00015021095	upf1	100	93.013	ENSTRUG00000000150	upf1	100	93.013	Takifugu_rubripes
ENSSFOG00015021095	upf1	100	94.737	ENSTRUG00000005131	-	100	94.737	Takifugu_rubripes
ENSSFOG00015021095	upf1	99	93.193	ENSTTRG00000011544	UPF1	100	91.413	Tursiops_truncatus
ENSSFOG00015021095	upf1	99	97.315	ENSUAMG00000007093	UPF1	100	95.004	Ursus_americanus
ENSSFOG00015021095	upf1	99	97.318	ENSUMAG00000006652	UPF1	99	97.513	Ursus_maritimus
ENSSFOG00015021095	upf1	99	97.315	ENSVVUG00000007797	UPF1	100	95.004	Vulpes_vulpes
ENSSFOG00015021095	upf1	100	82.115	ENSXETG00000013602	upf1	100	82.115	Xenopus_tropicalis
ENSSFOG00015021095	upf1	97	92.207	ENSXCOG00000015275	-	96	91.917	Xiphophorus_couchianus
ENSSFOG00015021095	upf1	99	95.446	ENSXCOG00000005764	-	100	95.446	Xiphophorus_couchianus
ENSSFOG00015021095	upf1	100	92.377	ENSXMAG00000001703	-	100	92.098	Xiphophorus_maculatus
ENSSFOG00015021095	upf1	100	95.100	ENSXMAG00000002540	-	100	95.100	Xiphophorus_maculatus