EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015021523 (Gene tree)
Gene ID: -
Gene Symbol: snrpf
Alias: snrpfl
Full Name: small nuclear ribonucleoprotein polypeptide F
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 390 bases
Position: chrKV411299.1:955968-956357
Accession: ZDB-GENE-040930-9
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015033721	LSM	PF01423.22	2.5e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015034099	-	204	-	ENSSFOP00015033721	67 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015021523's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015021523's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015021523	snrpf	88	45.763	ENSSFOG00015016480	lsm6	74	45.763

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015021523	snrpf	96	96.875	ENSG00000139343	SNRPF	74	96.875	Homo_sapiens
ENSSFOG00015021523	snrpf	97	98.462	ENSAPOG00000003377	snrpf	51	98.462	Acanthochromis_polyacanthus
ENSSFOG00015021523	snrpf	96	85.938	ENSAMEG00000018718	-	74	85.938	Ailuropoda_melanoleuca
ENSSFOG00015021523	snrpf	96	96.875	ENSAMEG00000002166	-	75	96.875	Ailuropoda_melanoleuca
ENSSFOG00015021523	snrpf	94	100.000	ENSACIG00000013216	snrpf	74	100.000	Amphilophus_citrinellus
ENSSFOG00015021523	snrpf	94	100.000	ENSAOCG00000015108	snrpf	74	100.000	Amphiprion_ocellaris
ENSSFOG00015021523	snrpf	94	100.000	ENSAPEG00000022022	snrpf	74	100.000	Amphiprion_percula
ENSSFOG00015021523	snrpf	97	96.923	ENSATEG00000022625	snrpf	70	96.923	Anabas_testudineus
ENSSFOG00015021523	snrpf	97	93.846	ENSACAG00000014073	SNRPF	75	93.846	Anolis_carolinensis
ENSSFOG00015021523	snrpf	96	67.188	ENSANAG00000025860	-	69	67.188	Aotus_nancymaae
ENSSFOG00015021523	snrpf	91	86.885	ENSANAG00000020297	-	56	86.885	Aotus_nancymaae
ENSSFOG00015021523	snrpf	96	96.875	ENSANAG00000032845	SNRPF	74	96.875	Aotus_nancymaae
ENSSFOG00015021523	snrpf	94	100.000	ENSACLG00000016066	snrpf	74	100.000	Astatotilapia_calliptera
ENSSFOG00015021523	snrpf	94	98.413	ENSAMXG00000007421	snrpf	74	98.413	Astyanax_mexicanus
ENSSFOG00015021523	snrpf	96	89.062	ENSBTAG00000050012	-	79	89.062	Bos_taurus
ENSSFOG00015021523	snrpf	96	96.875	ENSBTAG00000016271	SNRPF	74	96.875	Bos_taurus
ENSSFOG00015021523	snrpf	100	68.657	WBGene00004918	snr-5	79	68.657	Caenorhabditis_elegans
ENSSFOG00015021523	snrpf	96	96.875	ENSCJAG00000002705	-	74	96.875	Callithrix_jacchus
ENSSFOG00015021523	snrpf	96	96.875	ENSCAFG00000006395	-	58	96.875	Canis_familiaris
ENSSFOG00015021523	snrpf	94	90.476	ENSCAFG00000031151	-	73	90.476	Canis_familiaris
ENSSFOG00015021523	snrpf	90	95.000	ENSCAFG00020013161	-	64	95.000	Canis_lupus_dingo
ENSSFOG00015021523	snrpf	94	90.476	ENSCAFG00020010823	-	73	90.476	Canis_lupus_dingo
ENSSFOG00015021523	snrpf	96	81.250	ENSTSYG00000030635	-	73	81.250	Carlito_syrichta
ENSSFOG00015021523	snrpf	96	92.308	ENSTSYG00000036502	-	74	92.308	Carlito_syrichta
ENSSFOG00015021523	snrpf	94	93.651	ENSTSYG00000031636	-	53	93.651	Carlito_syrichta
ENSSFOG00015021523	snrpf	96	96.875	ENSCAPG00000007242	SNRPF	75	96.875	Cavia_aperea
ENSSFOG00015021523	snrpf	96	96.875	ENSCPOG00000013898	SNRPF	74	96.875	Cavia_porcellus
ENSSFOG00015021523	snrpf	96	96.875	ENSCCAG00000037378	-	74	96.875	Cebus_capucinus
ENSSFOG00015021523	snrpf	96	96.875	ENSCCAG00000017356	-	74	96.875	Cebus_capucinus
ENSSFOG00015021523	snrpf	94	88.889	ENSCCAG00000033627	-	50	88.889	Cebus_capucinus
ENSSFOG00015021523	snrpf	97	96.923	ENSCLAG00000007200	SNRPF	75	96.923	Chinchilla_lanigera
ENSSFOG00015021523	snrpf	96	96.875	ENSCSAG00000003602	-	52	96.875	Chlorocebus_sabaeus
ENSSFOG00015021523	snrpf	94	96.825	ENSCHOG00000009392	SNRPF	98	96.825	Choloepus_hoffmanni
ENSSFOG00015021523	snrpf	96	89.062	ENSCPBG00000006227	-	74	89.062	Chrysemys_picta_bellii
ENSSFOG00015021523	snrpf	94	88.889	ENSCPBG00000001985	-	75	88.889	Chrysemys_picta_bellii
ENSSFOG00015021523	snrpf	97	93.846	ENSCPBG00000024287	-	52	93.846	Chrysemys_picta_bellii
ENSSFOG00015021523	snrpf	96	87.500	ENSCPBG00000026463	-	74	87.500	Chrysemys_picta_bellii
ENSSFOG00015021523	snrpf	97	90.769	ENSCSAVG00000007498	-	74	90.769	Ciona_savignyi
ENSSFOG00015021523	snrpf	96	96.875	ENSCGRG00001017100	-	74	96.875	Cricetulus_griseus_chok1gshd
ENSSFOG00015021523	snrpf	94	88.889	ENSCGRG00000018878	-	78	88.889	Cricetulus_griseus_crigri
ENSSFOG00015021523	snrpf	96	96.875	ENSCGRG00000000336	-	74	96.875	Cricetulus_griseus_crigri
ENSSFOG00015021523	snrpf	96	98.438	ENSCSEG00000004748	snrpf	74	98.438	Cynoglossus_semilaevis
ENSSFOG00015021523	snrpf	97	98.462	ENSCVAG00000000397	snrpf	52	98.462	Cyprinodon_variegatus
ENSSFOG00015021523	snrpf	96	96.970	ENSDARG00000105037	snrpf	75	96.970	Danio_rerio
ENSSFOG00015021523	snrpf	96	95.312	ENSDNOG00000048989	-	57	95.312	Dasypus_novemcinctus
ENSSFOG00015021523	snrpf	96	84.375	ENSDNOG00000049373	-	56	84.375	Dasypus_novemcinctus
ENSSFOG00015021523	snrpf	73	93.878	ENSDORG00000029740	-	60	93.878	Dipodomys_ordii
ENSSFOG00015021523	snrpf	96	85.938	ENSDORG00000025351	-	89	85.938	Dipodomys_ordii
ENSSFOG00015021523	snrpf	100	77.612	FBgn0000426	SmF	76	77.612	Drosophila_melanogaster
ENSSFOG00015021523	snrpf	96	96.875	ENSETEG00000001558	-	74	96.875	Echinops_telfairi
ENSSFOG00015021523	snrpf	91	93.443	ENSEBUG00000001793	-	66	93.443	Eptatretus_burgeri
ENSSFOG00015021523	snrpf	96	96.875	ENSECAG00000019817	SNRPF	52	96.875	Equus_caballus
ENSSFOG00015021523	snrpf	96	96.875	ENSEEUG00000013509	SNRPF	75	96.875	Erinaceus_europaeus
ENSSFOG00015021523	snrpf	96	96.875	ENSELUG00000007737	RUXF	74	96.875	Esox_lucius
ENSSFOG00015021523	snrpf	96	96.875	ENSELUG00000003121	RUXF	74	96.875	Esox_lucius
ENSSFOG00015021523	snrpf	93	72.581	ENSFCAG00000031148	-	57	72.581	Felis_catus
ENSSFOG00015021523	snrpf	93	75.806	ENSFCAG00000021942	-	76	75.806	Felis_catus
ENSSFOG00015021523	snrpf	96	96.875	ENSFCAG00000029966	-	74	96.875	Felis_catus
ENSSFOG00015021523	snrpf	97	95.385	ENSFALG00000010799	SNRPF	76	95.385	Ficedula_albicollis
ENSSFOG00015021523	snrpf	96	96.875	ENSFDAG00000002831	-	74	96.875	Fukomys_damarensis
ENSSFOG00015021523	snrpf	97	98.462	ENSFHEG00000003240	snrpf	59	95.522	Fundulus_heteroclitus
ENSSFOG00015021523	snrpf	96	100.000	ENSGMOG00000007741	snrpf	75	100.000	Gadus_morhua
ENSSFOG00015021523	snrpf	96	96.875	ENSGALG00000011409	SNRPF	74	96.875	Gallus_gallus
ENSSFOG00015021523	snrpf	94	100.000	ENSGAFG00000016187	snrpf	72	100.000	Gambusia_affinis
ENSSFOG00015021523	snrpf	96	98.438	ENSGACG00000020055	snrpf	75	98.438	Gasterosteus_aculeatus
ENSSFOG00015021523	snrpf	79	94.340	ENSGAGG00000012945	-	59	92.188	Gopherus_agassizii
ENSSFOG00015021523	snrpf	100	80.597	ENSGAGG00000022991	-	79	80.597	Gopherus_agassizii
ENSSFOG00015021523	snrpf	94	90.476	ENSGAGG00000020974	-	53	90.476	Gopherus_agassizii
ENSSFOG00015021523	snrpf	58	92.308	ENSGAGG00000011163	-	68	92.308	Gopherus_agassizii
ENSSFOG00015021523	snrpf	96	85.938	ENSGAGG00000014132	-	77	85.938	Gopherus_agassizii
ENSSFOG00015021523	snrpf	96	71.875	ENSGGOG00000039936	-	69	71.875	Gorilla_gorilla
ENSSFOG00015021523	snrpf	96	68.750	ENSGGOG00000039564	-	75	68.750	Gorilla_gorilla
ENSSFOG00015021523	snrpf	96	96.875	ENSGGOG00000001127	-	74	96.875	Gorilla_gorilla
ENSSFOG00015021523	snrpf	96	95.312	ENSHGLG00000021172	-	74	95.312	Heterocephalus_glaber_female
ENSSFOG00015021523	snrpf	96	96.875	ENSHGLG00000009108	SNRPF	74	96.875	Heterocephalus_glaber_female
ENSSFOG00015021523	snrpf	96	95.312	ENSHGLG00100019596	-	74	95.312	Heterocephalus_glaber_male
ENSSFOG00015021523	snrpf	96	96.875	ENSHGLG00100008103	-	75	96.875	Heterocephalus_glaber_male
ENSSFOG00015021523	snrpf	94	88.571	ENSHCOG00000018663	snrpf	55	88.571	Hippocampus_comes
ENSSFOG00015021523	snrpf	96	100.000	ENSIPUG00000018994	snrpf	74	100.000	Ictalurus_punctatus
ENSSFOG00015021523	snrpf	96	96.875	ENSSTOG00000010434	-	74	96.875	Ictidomys_tridecemlineatus
ENSSFOG00015021523	snrpf	96	96.875	ENSJJAG00000011272	-	74	96.875	Jaculus_jaculus
ENSSFOG00015021523	snrpf	69	91.304	ENSJJAG00000004828	-	71	91.304	Jaculus_jaculus
ENSSFOG00015021523	snrpf	96	76.562	ENSJJAG00000004558	-	76	76.562	Jaculus_jaculus
ENSSFOG00015021523	snrpf	96	84.375	ENSJJAG00000010502	-	76	84.375	Jaculus_jaculus
ENSSFOG00015021523	snrpf	94	100.000	ENSKMAG00000013566	snrpf	73	100.000	Kryptolebias_marmoratus
ENSSFOG00015021523	snrpf	96	98.438	ENSLBEG00000008800	snrpf	74	98.438	Labrus_bergylta
ENSSFOG00015021523	snrpf	96	96.875	ENSLACG00000002456	-	55	96.875	Latimeria_chalumnae
ENSSFOG00015021523	snrpf	96	96.875	ENSLOCG00000015744	snrpf	74	96.875	Lepisosteus_oculatus
ENSSFOG00015021523	snrpf	97	95.385	ENSLAFG00000017426	SNRPF	76	95.385	Loxodonta_africana
ENSSFOG00015021523	snrpf	94	98.413	ENSMAMG00000016593	snrpf	74	98.413	Mastacembelus_armatus
ENSSFOG00015021523	snrpf	94	100.000	ENSMZEG00005014701	snrpf	74	100.000	Maylandia_zebra
ENSSFOG00015021523	snrpf	94	96.825	ENSMGAG00000011453	-	57	96.825	Meleagris_gallopavo
ENSSFOG00015021523	snrpf	96	92.188	ENSMAUG00000008799	-	74	92.188	Mesocricetus_auratus
ENSSFOG00015021523	snrpf	93	67.742	ENSMAUG00000010289	-	72	67.742	Mesocricetus_auratus
ENSSFOG00015021523	snrpf	79	96.226	ENSMAUG00000016909	-	72	96.226	Mesocricetus_auratus
ENSSFOG00015021523	snrpf	79	96.226	ENSMAUG00000019737	-	72	96.226	Mesocricetus_auratus
ENSSFOG00015021523	snrpf	96	96.875	ENSMICG00000012153	-	74	96.875	Microcebus_murinus
ENSSFOG00015021523	snrpf	96	90.625	ENSMICG00000030494	-	51	90.625	Microcebus_murinus
ENSSFOG00015021523	snrpf	96	82.812	ENSMOCG00000022166	-	70	82.812	Microtus_ochrogaster
ENSSFOG00015021523	snrpf	87	81.034	ENSMOCG00000020220	-	74	81.034	Microtus_ochrogaster
ENSSFOG00015021523	snrpf	96	96.875	ENSMOCG00000020437	Snrpf	74	96.875	Microtus_ochrogaster
ENSSFOG00015021523	snrpf	94	100.000	ENSMMOG00000007127	snrpf	75	100.000	Mola_mola
ENSSFOG00015021523	snrpf	96	96.875	ENSMODG00000008091	SNRPF	56	96.875	Monodelphis_domestica
ENSSFOG00015021523	snrpf	94	100.000	ENSMALG00000012328	snrpf	74	100.000	Monopterus_albus
ENSSFOG00015021523	snrpf	96	96.875	MGP_CAROLIEiJ_G0015735	-	74	96.875	Mus_caroli
ENSSFOG00015021523	snrpf	96	96.875	ENSMUSG00000020018	Snrpf	74	96.875	Mus_musculus
ENSSFOG00015021523	snrpf	96	96.875	MGP_PahariEiJ_G0031350	Snrpf	74	96.875	Mus_pahari
ENSSFOG00015021523	snrpf	96	96.875	MGP_SPRETEiJ_G0016553	Snrpf	74	96.875	Mus_spretus
ENSSFOG00015021523	snrpf	96	96.875	ENSMPUG00000007176	-	57	96.875	Mustela_putorius_furo
ENSSFOG00015021523	snrpf	96	78.125	ENSMLUG00000026269	-	60	78.125	Myotis_lucifugus
ENSSFOG00015021523	snrpf	96	96.875	ENSMLUG00000026149	-	60	96.875	Myotis_lucifugus
ENSSFOG00015021523	snrpf	96	96.875	ENSMLUG00000029201	-	60	96.875	Myotis_lucifugus
ENSSFOG00015021523	snrpf	96	96.875	ENSMLUG00000027932	-	60	96.875	Myotis_lucifugus
ENSSFOG00015021523	snrpf	96	96.875	ENSMLUG00000013577	-	75	96.875	Myotis_lucifugus
ENSSFOG00015021523	snrpf	96	96.875	ENSNGAG00000024292	-	74	96.875	Nannospalax_galili
ENSSFOG00015021523	snrpf	75	90.000	ENSNGAG00000005851	-	59	90.000	Nannospalax_galili
ENSSFOG00015021523	snrpf	100	95.522	ENSNBRG00000011682	snrpf	68	95.522	Neolamprologus_brichardi
ENSSFOG00015021523	snrpf	96	96.875	ENSODEG00000010328	-	74	96.875	Octodon_degus
ENSSFOG00015021523	snrpf	96	96.875	ENSOCUG00000010925	SNRPF	57	96.875	Oryctolagus_cuniculus
ENSSFOG00015021523	snrpf	94	98.413	ENSORLG00020008216	snrpf	75	98.413	Oryzias_latipes_hni
ENSSFOG00015021523	snrpf	94	98.413	ENSORLG00015007418	snrpf	75	98.413	Oryzias_latipes_hsok
ENSSFOG00015021523	snrpf	94	98.413	ENSOMEG00000003018	snrpf	74	98.413	Oryzias_melastigma
ENSSFOG00015021523	snrpf	96	95.312	ENSOGAG00000030323	-	74	95.312	Otolemur_garnettii
ENSSFOG00015021523	snrpf	96	96.875	ENSOARG00000011853	-	56	96.875	Ovis_aries
ENSSFOG00015021523	snrpf	96	68.750	ENSPPAG00000037479	-	76	68.750	Pan_paniscus
ENSSFOG00015021523	snrpf	96	71.875	ENSPPAG00000037544	-	69	71.875	Pan_paniscus
ENSSFOG00015021523	snrpf	96	96.875	ENSPPRG00000005875	-	74	96.875	Panthera_pardus
ENSSFOG00015021523	snrpf	93	72.581	ENSPPRG00000007449	-	63	72.581	Panthera_pardus
ENSSFOG00015021523	snrpf	93	72.581	ENSPTIG00000005117	-	74	72.581	Panthera_tigris_altaica
ENSSFOG00015021523	snrpf	96	96.875	ENSPTIG00000007520	SNRPF	74	96.875	Panthera_tigris_altaica
ENSSFOG00015021523	snrpf	96	68.750	ENSPTRG00000047717	-	76	68.750	Pan_troglodytes
ENSSFOG00015021523	snrpf	96	71.875	ENSPTRG00000043814	-	69	71.875	Pan_troglodytes
ENSSFOG00015021523	snrpf	100	94.286	ENSPKIG00000014784	snrpf	77	94.286	Paramormyrops_kingsleyae
ENSSFOG00015021523	snrpf	97	95.385	ENSPSIG00000016462	SNRPF	76	95.385	Pelodiscus_sinensis
ENSSFOG00015021523	snrpf	94	100.000	ENSPMGG00000023548	snrpf	75	100.000	Periophthalmus_magnuspinnatus
ENSSFOG00015021523	snrpf	96	96.875	ENSPEMG00000023326	Snrpf	74	96.875	Peromyscus_maniculatus_bairdii
ENSSFOG00015021523	snrpf	94	100.000	ENSPLAG00000023932	snrpf	74	100.000	Poecilia_latipinna
ENSSFOG00015021523	snrpf	94	100.000	ENSPMEG00000003377	snrpf	74	100.000	Poecilia_mexicana
ENSSFOG00015021523	snrpf	97	98.462	ENSPREG00000022635	snrpf	75	98.462	Poecilia_reticulata
ENSSFOG00015021523	snrpf	96	96.875	ENSPPYG00000004847	-	74	96.875	Pongo_abelii
ENSSFOG00015021523	snrpf	96	96.875	ENSPCOG00000023833	-	74	96.875	Propithecus_coquereli
ENSSFOG00015021523	snrpf	96	96.875	ENSPVAG00000009036	SNRPF	74	96.875	Pteropus_vampyrus
ENSSFOG00015021523	snrpf	94	100.000	ENSPNYG00000021712	snrpf	74	100.000	Pundamilia_nyererei
ENSSFOG00015021523	snrpf	94	98.413	ENSPNAG00000019117	snrpf	74	98.413	Pygocentrus_nattereri
ENSSFOG00015021523	snrpf	96	96.875	ENSRNOG00000005556	Snrpf	74	96.875	Rattus_norvegicus
ENSSFOG00015021523	snrpf	96	93.750	ENSRBIG00000030414	-	74	93.750	Rhinopithecus_bieti
ENSSFOG00015021523	snrpf	96	93.750	ENSRROG00000021975	-	74	93.750	Rhinopithecus_roxellana
ENSSFOG00015021523	snrpf	93	55.556	YPR182W	SMX3	73	55.556	Saccharomyces_cerevisiae
ENSSFOG00015021523	snrpf	96	96.875	ENSSBOG00000012868	-	74	96.875	Saimiri_boliviensis_boliviensis
ENSSFOG00015021523	snrpf	96	77.612	ENSSBOG00000027638	-	75	77.612	Saimiri_boliviensis_boliviensis
ENSSFOG00015021523	snrpf	96	81.250	ENSSBOG00000032297	-	72	81.250	Saimiri_boliviensis_boliviensis
ENSSFOG00015021523	snrpf	96	96.875	ENSSBOG00000036179	-	74	96.875	Saimiri_boliviensis_boliviensis
ENSSFOG00015021523	snrpf	100	92.537	ENSSHAG00000012294	SNRPF	60	92.537	Sarcophilus_harrisii
ENSSFOG00015021523	snrpf	96	98.438	ENSSMAG00000005533	snrpf	74	98.438	Scophthalmus_maximus
ENSSFOG00015021523	snrpf	96	100.000	ENSSDUG00000016283	snrpf	76	100.000	Seriola_dumerili
ENSSFOG00015021523	snrpf	97	73.846	ENSSLDG00000003885	-	79	73.846	Seriola_lalandi_dorsalis
ENSSFOG00015021523	snrpf	94	100.000	ENSSLDG00000005119	snrpf	73	100.000	Seriola_lalandi_dorsalis
ENSSFOG00015021523	snrpf	94	96.825	ENSSPUG00000014590	-	74	96.825	Sphenodon_punctatus
ENSSFOG00015021523	snrpf	100	100.000	ENSSPAG00000003283	snrpf	76	100.000	Stegastes_partitus
ENSSFOG00015021523	snrpf	96	96.875	ENSSSCG00000000895	SNRPF	74	96.875	Sus_scrofa
ENSSFOG00015021523	snrpf	72	97.917	ENSTRUG00000014956	snrpf	70	97.917	Takifugu_rubripes
ENSSFOG00015021523	snrpf	96	98.438	ENSTNIG00000012672	snrpf	74	98.438	Tetraodon_nigroviridis
ENSSFOG00015021523	snrpf	96	85.938	ENSUAMG00000001101	-	75	85.938	Ursus_americanus
ENSSFOG00015021523	snrpf	96	96.875	ENSUAMG00000008176	-	82	96.875	Ursus_americanus
ENSSFOG00015021523	snrpf	96	96.875	ENSUMAG00000003528	-	78	96.875	Ursus_maritimus
ENSSFOG00015021523	snrpf	96	85.938	ENSUMAG00000006177	-	75	85.938	Ursus_maritimus
ENSSFOG00015021523	snrpf	96	96.875	ENSVPAG00000008712	-	74	96.875	Vicugna_pacos
ENSSFOG00015021523	snrpf	96	89.062	ENSVVUG00000023821	-	82	89.062	Vulpes_vulpes
ENSSFOG00015021523	snrpf	97	98.462	ENSXCOG00000013860	snrpf	75	98.462	Xiphophorus_couchianus
ENSSFOG00015021523	snrpf	94	100.000	ENSXMAG00000015448	snrpf	74	100.000	Xiphophorus_maculatus