EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015021535 (Gene tree)
Gene ID: 108926501
Gene Symbol: sf3b1
Alias: tst|wu:fb99f09
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 16398 bases
Position: chrKV410854.1:54305-70702
Accession: 108926501
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015033786	SF3b1	PF08920.10	2.7e-47	1	1
ENSSFOP00015033823	SF3b1	PF08920.10	1.7e-45	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015034201	-	3894	-	ENSSFOP00015033823	1297 (aa)	-	-
ENSSFOT00015034164	-	6767	XM_018739219	ENSSFOP00015033786	1315 (aa)	XP_018594735	A0A1W4Z2G6

Gene Model

Click here to download ENSSFOG00015021535's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015021535's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015021535	sf3b1	100	94.761	ENSG00000115524	SF3B1	100	94.609	Homo_sapiens
ENSSFOG00015021535	sf3b1	100	96.578	ENSAPOG00000011894	sf3b1	100	96.578	Acanthochromis_polyacanthus
ENSSFOG00015021535	sf3b1	99	94.652	ENSAMEG00000013809	SF3B1	99	94.500	Ailuropoda_melanoleuca
ENSSFOG00015021535	sf3b1	100	95.589	ENSACIG00000020910	sf3b1	97	95.589	Amphilophus_citrinellus
ENSSFOG00015021535	sf3b1	100	96.578	ENSAOCG00000004478	sf3b1	100	96.578	Amphiprion_ocellaris
ENSSFOG00015021535	sf3b1	100	96.578	ENSAPEG00000012937	sf3b1	100	96.578	Amphiprion_percula
ENSSFOG00015021535	sf3b1	100	97.034	ENSATEG00000020435	sf3b1	100	97.034	Anabas_testudineus
ENSSFOG00015021535	sf3b1	99	94.946	ENSAPLG00000003993	SF3B1	99	94.793	Anas_platyrhynchos
ENSSFOG00015021535	sf3b1	100	94.833	ENSACAG00000009612	SF3B1	100	94.681	Anolis_carolinensis
ENSSFOG00015021535	sf3b1	100	94.761	ENSANAG00000021577	SF3B1	100	95.637	Aotus_nancymaae
ENSSFOG00015021535	sf3b1	100	95.513	ENSACLG00000023470	sf3b1	100	95.513	Astatotilapia_calliptera
ENSSFOG00015021535	sf3b1	100	96.809	ENSAMXG00000002219	sf3b1	100	96.809	Astyanax_mexicanus
ENSSFOG00015021535	sf3b1	100	94.685	ENSBTAG00000008915	SF3B1	100	94.533	Bos_taurus
ENSSFOG00015021535	sf3b1	99	65.364	WBGene00011605	sftb-1	99	65.390	Caenorhabditis_elegans
ENSSFOG00015021535	sf3b1	100	94.761	ENSCJAG00000003902	SF3B1	100	94.609	Callithrix_jacchus
ENSSFOG00015021535	sf3b1	100	94.761	ENSCAFG00000010826	SF3B1	100	94.609	Canis_familiaris
ENSSFOG00015021535	sf3b1	100	94.761	ENSCAFG00020004750	SF3B1	100	94.609	Canis_lupus_dingo
ENSSFOG00015021535	sf3b1	100	94.685	ENSCHIG00000015226	SF3B1	100	94.533	Capra_hircus
ENSSFOG00015021535	sf3b1	100	94.685	ENSTSYG00000009214	SF3B1	100	94.533	Carlito_syrichta
ENSSFOG00015021535	sf3b1	99	94.593	ENSCAPG00000006547	SF3B1	99	94.440	Cavia_aperea
ENSSFOG00015021535	sf3b1	99	94.721	ENSCPOG00000009353	SF3B1	100	94.568	Cavia_porcellus
ENSSFOG00015021535	sf3b1	100	94.761	ENSCCAG00000020506	SF3B1	100	94.609	Cebus_capucinus
ENSSFOG00015021535	sf3b1	100	94.761	ENSCATG00000035735	SF3B1	100	94.609	Cercocebus_atys
ENSSFOG00015021535	sf3b1	99	94.725	ENSCLAG00000014767	SF3B1	99	94.572	Chinchilla_lanigera
ENSSFOG00015021535	sf3b1	100	94.761	ENSCSAG00000011505	SF3B1	100	94.609	Chlorocebus_sabaeus
ENSSFOG00015021535	sf3b1	76	93.044	ENSCHOG00000009860	SF3B1	76	93.044	Choloepus_hoffmanni
ENSSFOG00015021535	sf3b1	100	95.057	ENSCPBG00000021902	SF3B1	100	94.905	Chrysemys_picta_bellii
ENSSFOG00015021535	sf3b1	69	77.644	ENSCING00000002558	-	99	78.122	Ciona_intestinalis
ENSSFOG00015021535	sf3b1	99	79.323	ENSCSAVG00000002559	-	99	79.398	Ciona_savignyi
ENSSFOG00015021535	sf3b1	100	94.761	ENSCANG00000029415	SF3B1	100	94.609	Colobus_angolensis_palliatus
ENSSFOG00015021535	sf3b1	100	94.761	ENSCGRG00001016990	Sf3b1	100	94.609	Cricetulus_griseus_chok1gshd
ENSSFOG00015021535	sf3b1	100	94.761	ENSCGRG00000005301	Sf3b1	100	94.609	Cricetulus_griseus_crigri
ENSSFOG00015021535	sf3b1	100	92.167	ENSCSEG00000003860	sf3b1	100	92.167	Cynoglossus_semilaevis
ENSSFOG00015021535	sf3b1	96	96.361	ENSCVAG00000003680	sf3b1	99	96.361	Cyprinodon_variegatus
ENSSFOG00015021535	sf3b1	100	96.353	ENSDARG00000056138	sf3b1	100	96.353	Danio_rerio
ENSSFOG00015021535	sf3b1	100	94.689	ENSDNOG00000011754	SF3B1	100	94.537	Dasypus_novemcinctus
ENSSFOG00015021535	sf3b1	99	92.731	ENSDORG00000002399	Sf3b1	100	92.655	Dipodomys_ordii
ENSSFOG00015021535	sf3b1	100	75.875	FBgn0031266	Sf3b1	100	75.933	Drosophila_melanogaster
ENSSFOG00015021535	sf3b1	83	93.676	ENSETEG00000009188	SF3B1	100	93.492	Echinops_telfairi
ENSSFOG00015021535	sf3b1	99	86.509	ENSEBUG00000004325	sf3b1	100	88.554	Eptatretus_burgeri
ENSSFOG00015021535	sf3b1	100	94.685	ENSEASG00005020159	SF3B1	98	94.533	Equus_asinus_asinus
ENSSFOG00015021535	sf3b1	100	94.685	ENSECAG00000021657	SF3B1	98	94.533	Equus_caballus
ENSSFOG00015021535	sf3b1	87	99.712	ENSEEUG00000000836	SF3B1	81	99.712	Erinaceus_europaeus
ENSSFOG00015021535	sf3b1	100	96.375	ENSELUG00000005977	sf3b1	98	96.375	Esox_lucius
ENSSFOG00015021535	sf3b1	100	94.761	ENSFCAG00000005038	SF3B1	100	94.609	Felis_catus
ENSSFOG00015021535	sf3b1	99	94.870	ENSFALG00000004281	SF3B1	99	94.717	Ficedula_albicollis
ENSSFOG00015021535	sf3b1	100	94.761	ENSFDAG00000017510	SF3B1	100	94.609	Fukomys_damarensis
ENSSFOG00015021535	sf3b1	100	95.365	ENSFHEG00000014333	sf3b1	100	95.365	Fundulus_heteroclitus
ENSSFOG00015021535	sf3b1	100	95.372	ENSGMOG00000006773	sf3b1	100	95.372	Gadus_morhua
ENSSFOG00015021535	sf3b1	100	94.981	ENSGALG00000008038	SF3B1	100	94.829	Gallus_gallus
ENSSFOG00015021535	sf3b1	100	94.301	ENSGAFG00000000704	sf3b1	100	96.296	Gambusia_affinis
ENSSFOG00015021535	sf3b1	100	95.368	ENSGACG00000008839	sf3b1	100	95.368	Gasterosteus_aculeatus
ENSSFOG00015021535	sf3b1	100	94.411	ENSGAGG00000017478	SF3B1	100	94.260	Gopherus_agassizii
ENSSFOG00015021535	sf3b1	99	89.908	ENSGGOG00000009264	SF3B1	99	89.908	Gorilla_gorilla
ENSSFOG00015021535	sf3b1	99	95.583	ENSHBUG00000007705	sf3b1	99	95.583	Haplochromis_burtoni
ENSSFOG00015021535	sf3b1	99	94.725	ENSHGLG00000008285	-	99	94.572	Heterocephalus_glaber_female
ENSSFOG00015021535	sf3b1	99	92.813	ENSHGLG00100005535	-	99	92.661	Heterocephalus_glaber_male
ENSSFOG00015021535	sf3b1	100	95.537	ENSHCOG00000016775	sf3b1	100	95.537	Hippocampus_comes
ENSSFOG00015021535	sf3b1	100	96.578	ENSIPUG00000013171	sf3b1	100	96.578	Ictalurus_punctatus
ENSSFOG00015021535	sf3b1	100	94.761	ENSSTOG00000011034	SF3B1	100	94.609	Ictidomys_tridecemlineatus
ENSSFOG00015021535	sf3b1	99	94.781	ENSJJAG00000010903	Sf3b1	99	94.628	Jaculus_jaculus
ENSSFOG00015021535	sf3b1	100	95.675	ENSKMAG00000004009	sf3b1	100	95.675	Kryptolebias_marmoratus
ENSSFOG00015021535	sf3b1	100	95.589	ENSLBEG00000022208	sf3b1	100	95.589	Labrus_bergylta
ENSSFOG00015021535	sf3b1	99	91.331	ENSLACG00000014832	SF3B1	99	91.103	Latimeria_chalumnae
ENSSFOG00015021535	sf3b1	100	96.369	ENSLOCG00000003899	sf3b1	100	96.369	Lepisosteus_oculatus
ENSSFOG00015021535	sf3b1	100	94.761	ENSLAFG00000001956	SF3B1	100	94.609	Loxodonta_africana
ENSSFOG00015021535	sf3b1	99	94.725	ENSMMUG00000022430	SF3B1	99	94.572	Macaca_mulatta
ENSSFOG00015021535	sf3b1	100	94.761	ENSMNEG00000042333	SF3B1	100	95.637	Macaca_nemestrina
ENSSFOG00015021535	sf3b1	94	89.911	ENSMLEG00000026141	SF3B1	98	90.169	Mandrillus_leucophaeus
ENSSFOG00015021535	sf3b1	100	96.730	ENSMAMG00000010241	sf3b1	100	96.730	Mastacembelus_armatus
ENSSFOG00015021535	sf3b1	100	95.513	ENSMZEG00005021254	sf3b1	100	95.513	Maylandia_zebra
ENSSFOG00015021535	sf3b1	99	94.334	ENSMGAG00000007017	SF3B1	99	94.181	Meleagris_gallopavo
ENSSFOG00015021535	sf3b1	99	90.520	ENSMAUG00000009071	Sf3b1	99	90.367	Mesocricetus_auratus
ENSSFOG00015021535	sf3b1	100	94.685	ENSMICG00000013879	SF3B1	100	94.533	Microcebus_murinus
ENSSFOG00015021535	sf3b1	99	90.451	ENSMOCG00000000455	Sf3b1	99	90.451	Microtus_ochrogaster
ENSSFOG00015021535	sf3b1	84	96.182	ENSMMOG00000000475	sf3b1	100	96.182	Mola_mola
ENSSFOG00015021535	sf3b1	100	94.229	ENSMODG00000012275	SF3B1	100	94.077	Monodelphis_domestica
ENSSFOG00015021535	sf3b1	100	96.578	ENSMALG00000017211	sf3b1	100	96.578	Monopterus_albus
ENSSFOG00015021535	sf3b1	100	94.761	MGP_CAROLIEiJ_G0014141	Sf3b1	100	94.609	Mus_caroli
ENSSFOG00015021535	sf3b1	100	94.761	ENSMUSG00000025982	Sf3b1	100	94.609	Mus_musculus
ENSSFOG00015021535	sf3b1	100	94.761	MGP_SPRETEiJ_G0014947	Sf3b1	100	94.609	Mus_spretus
ENSSFOG00015021535	sf3b1	100	94.761	ENSMPUG00000007799	SF3B1	100	94.609	Mustela_putorius_furo
ENSSFOG00015021535	sf3b1	100	93.622	ENSMLUG00000000840	SF3B1	100	93.470	Myotis_lucifugus
ENSSFOG00015021535	sf3b1	99	94.440	ENSNGAG00000021884	-	100	94.288	Nannospalax_galili
ENSSFOG00015021535	sf3b1	100	90.653	ENSNBRG00000015816	sf3b1	100	90.653	Neolamprologus_brichardi
ENSSFOG00015021535	sf3b1	100	94.761	ENSNLEG00000006861	SF3B1	100	94.609	Nomascus_leucogenys
ENSSFOG00015021535	sf3b1	69	99.717	ENSMEUG00000015848	-	66	99.717	Notamacropus_eugenii
ENSSFOG00015021535	sf3b1	100	81.872	ENSOPRG00000008596	SF3B1	100	82.932	Ochotona_princeps
ENSSFOG00015021535	sf3b1	100	94.761	ENSODEG00000011153	-	100	94.609	Octodon_degus
ENSSFOG00015021535	sf3b1	100	95.513	ENSONIG00000013758	sf3b1	100	95.513	Oreochromis_niloticus
ENSSFOG00015021535	sf3b1	82	96.587	ENSOCUG00000012722	-	96	96.587	Oryctolagus_cuniculus
ENSSFOG00015021535	sf3b1	100	95.817	ENSORLG00000020219	sf3b1	100	95.817	Oryzias_latipes
ENSSFOG00015021535	sf3b1	100	95.817	ENSORLG00020001746	sf3b1	100	95.817	Oryzias_latipes_hni
ENSSFOG00015021535	sf3b1	64	94.076	ENSORLG00015001759	sf3b1	98	94.076	Oryzias_latipes_hsok
ENSSFOG00015021535	sf3b1	100	96.049	ENSOMEG00000019231	sf3b1	100	96.049	Oryzias_melastigma
ENSSFOG00015021535	sf3b1	100	94.685	ENSOARG00000015374	SF3B1	100	94.533	Ovis_aries
ENSSFOG00015021535	sf3b1	100	94.761	ENSPPAG00000035007	SF3B1	100	94.609	Pan_paniscus
ENSSFOG00015021535	sf3b1	100	94.761	ENSPPRG00000009090	SF3B1	100	94.609	Panthera_pardus
ENSSFOG00015021535	sf3b1	100	94.761	ENSPTIG00000021557	SF3B1	100	94.609	Panthera_tigris_altaica
ENSSFOG00015021535	sf3b1	99	87.338	ENSPTRG00000012771	SF3B1	99	87.185	Pan_troglodytes
ENSSFOG00015021535	sf3b1	100	94.761	ENSPANG00000013417	SF3B1	100	94.609	Papio_anubis
ENSSFOG00015021535	sf3b1	100	97.494	ENSPKIG00000000784	sf3b1	100	97.494	Paramormyrops_kingsleyae
ENSSFOG00015021535	sf3b1	99	94.100	ENSPSIG00000017222	SF3B1	98	94.100	Pelodiscus_sinensis
ENSSFOG00015021535	sf3b1	91	95.973	ENSPMGG00000004330	sf3b1	99	95.973	Periophthalmus_magnuspinnatus
ENSSFOG00015021535	sf3b1	99	94.725	ENSPEMG00000010699	Sf3b1	100	94.572	Peromyscus_maniculatus_bairdii
ENSSFOG00015021535	sf3b1	100	89.728	ENSPMAG00000001311	sf3b1	100	89.728	Petromyzon_marinus
ENSSFOG00015021535	sf3b1	100	94.305	ENSPCIG00000010642	SF3B1	100	94.153	Phascolarctos_cinereus
ENSSFOG00015021535	sf3b1	100	96.279	ENSPFOG00000000073	sf3b1	100	96.279	Poecilia_formosa
ENSSFOG00015021535	sf3b1	100	96.353	ENSPLAG00000002293	sf3b1	100	96.353	Poecilia_latipinna
ENSSFOG00015021535	sf3b1	100	96.353	ENSPMEG00000000446	sf3b1	98	96.353	Poecilia_mexicana
ENSSFOG00015021535	sf3b1	100	96.429	ENSPREG00000019652	sf3b1	100	96.429	Poecilia_reticulata
ENSSFOG00015021535	sf3b1	82	97.507	ENSPPYG00000013044	SF3B1	95	97.507	Pongo_abelii
ENSSFOG00015021535	sf3b1	100	94.609	ENSPCAG00000009292	SF3B1	100	94.457	Procavia_capensis
ENSSFOG00015021535	sf3b1	100	94.685	ENSPCOG00000024074	SF3B1	100	94.533	Propithecus_coquereli
ENSSFOG00015021535	sf3b1	100	94.761	ENSPVAG00000008302	SF3B1	100	94.609	Pteropus_vampyrus
ENSSFOG00015021535	sf3b1	100	95.437	ENSPNYG00000014939	sf3b1	100	95.437	Pundamilia_nyererei
ENSSFOG00015021535	sf3b1	100	97.036	ENSPNAG00000008288	sf3b1	100	97.036	Pygocentrus_nattereri
ENSSFOG00015021535	sf3b1	100	94.761	ENSRNOG00000013516	Sf3b1	100	94.609	Rattus_norvegicus
ENSSFOG00015021535	sf3b1	99	91.027	ENSRBIG00000026096	SF3B1	100	90.875	Rhinopithecus_bieti
ENSSFOG00015021535	sf3b1	100	94.761	ENSRROG00000031308	SF3B1	100	94.609	Rhinopithecus_roxellana
ENSSFOG00015021535	sf3b1	100	94.761	ENSSBOG00000020080	SF3B1	100	94.609	Saimiri_boliviensis_boliviensis
ENSSFOG00015021535	sf3b1	100	94.229	ENSSHAG00000017564	SF3B1	100	94.077	Sarcophilus_harrisii
ENSSFOG00015021535	sf3b1	99	95.675	ENSSMAG00000013977	sf3b1	99	95.675	Scophthalmus_maximus
ENSSFOG00015021535	sf3b1	100	96.654	ENSSDUG00000017422	sf3b1	100	96.654	Seriola_dumerili
ENSSFOG00015021535	sf3b1	100	96.578	ENSSLDG00000019495	sf3b1	100	96.578	Seriola_lalandi_dorsalis
ENSSFOG00015021535	sf3b1	77	98.768	ENSSARG00000007016	SF3B1	75	98.768	Sorex_araneus
ENSSFOG00015021535	sf3b1	100	94.905	ENSSPUG00000000410	SF3B1	100	94.677	Sphenodon_punctatus
ENSSFOG00015021535	sf3b1	100	96.502	ENSSPAG00000010451	sf3b1	99	96.502	Stegastes_partitus
ENSSFOG00015021535	sf3b1	91	94.343	ENSSSCG00000016075	SF3B1	100	95.637	Sus_scrofa
ENSSFOG00015021535	sf3b1	100	94.981	ENSTGUG00000010553	SF3B1	100	94.829	Taeniopygia_guttata
ENSSFOG00015021535	sf3b1	100	96.122	ENSTRUG00000015534	sf3b1	100	96.122	Takifugu_rubripes
ENSSFOG00015021535	sf3b1	84	97.624	ENSTBEG00000008714	SF3B1	93	97.624	Tupaia_belangeri
ENSSFOG00015021535	sf3b1	92	93.300	ENSTTRG00000003414	SF3B1	92	93.300	Tursiops_truncatus
ENSSFOG00015021535	sf3b1	94	86.733	ENSUAMG00000018506	SF3B1	99	97.773	Ursus_americanus
ENSSFOG00015021535	sf3b1	100	94.761	ENSUMAG00000020945	SF3B1	100	94.609	Ursus_maritimus
ENSSFOG00015021535	sf3b1	95	93.951	ENSVPAG00000005798	SF3B1	96	93.951	Vicugna_pacos
ENSSFOG00015021535	sf3b1	100	94.761	ENSVVUG00000025948	SF3B1	95	94.609	Vulpes_vulpes
ENSSFOG00015021535	sf3b1	100	92.938	ENSXETG00000013339	sf3b1	100	92.711	Xenopus_tropicalis
ENSSFOG00015021535	sf3b1	100	91.945	ENSXCOG00000018086	sf3b1	100	92.249	Xiphophorus_couchianus
ENSSFOG00015021535	sf3b1	100	96.353	ENSXMAG00000007369	sf3b1	100	96.536	Xiphophorus_maculatus