EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015021539 (Gene tree)
Gene ID: 108930784
Gene Symbol: rif1
Alias: fc38c03|si:dkey-89p3.2|wu:fc38c03
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 16075 bases
Position: chrKV410788.1:5528600-5544674
Accession: 108930784
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015034002	Rif1_N	PF12231.8	4.6e-82	1	1
ENSSFOP00015034036	Rif1_N	PF12231.8	4.5e-80	1	1
ENSSFOP00015034061	Rif1_N	PF12231.8	1.2e-64	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015034439	-	6240	-	ENSSFOP00015034061	2079 (aa)	-	-
ENSSFOT00015034380	-	6450	XM_018746195	ENSSFOP00015034002	2149 (aa)	XP_018601711	-
ENSSFOT00015034414	-	6441	XM_018746219	ENSSFOP00015034036	2146 (aa)	XP_018601735	-

Gene Model

Click here to download ENSSFOG00015021539's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015021539's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015021539	rif1	75	53.193	ENSG00000080345	RIF1	96	58.852	Homo_sapiens
ENSSFOG00015021539	rif1	93	53.916	ENSAPOG00000011073	rif1	83	53.855	Acanthochromis_polyacanthus
ENSSFOG00015021539	rif1	56	64.411	ENSACIG00000017765	rif1	60	60.857	Amphilophus_citrinellus
ENSSFOG00015021539	rif1	88	55.752	ENSAOCG00000017231	rif1	77	57.064	Amphiprion_ocellaris
ENSSFOG00015021539	rif1	85	66.285	ENSAPEG00000013228	rif1	77	66.539	Amphiprion_percula
ENSSFOG00015021539	rif1	84	66.279	ENSATEG00000022887	rif1	79	66.279	Anabas_testudineus
ENSSFOG00015021539	rif1	86	48.214	ENSAPLG00000007092	RIF1	70	53.822	Anas_platyrhynchos
ENSSFOG00015021539	rif1	85	44.149	ENSACAG00000003714	RIF1	66	51.176	Anolis_carolinensis
ENSSFOG00015021539	rif1	70	52.989	ENSANAG00000024840	RIF1	63	53.150	Aotus_nancymaae
ENSSFOG00015021539	rif1	99	58.616	ENSAMXG00000010910	rif1	99	57.316	Astyanax_mexicanus
ENSSFOG00015021539	rif1	66	50.914	ENSBTAG00000021020	RIF1	63	52.361	Bos_taurus
ENSSFOG00015021539	rif1	69	53.306	ENSCAFG00000005670	RIF1	60	53.306	Canis_familiaris
ENSSFOG00015021539	rif1	69	53.306	ENSCAFG00020016401	RIF1	63	53.306	Canis_lupus_dingo
ENSSFOG00015021539	rif1	69	53.441	ENSCHIG00000020327	RIF1	62	53.441	Capra_hircus
ENSSFOG00015021539	rif1	80	54.762	ENSTSYG00000008861	RIF1	75	54.762	Carlito_syrichta
ENSSFOG00015021539	rif1	59	44.048	ENSCAPG00000008957	RIF1	65	44.048	Cavia_aperea
ENSSFOG00015021539	rif1	70	50.962	ENSCCAG00000024760	RIF1	62	51.373	Cebus_capucinus
ENSSFOG00015021539	rif1	70	53.188	ENSCATG00000033353	RIF1	63	53.387	Cercocebus_atys
ENSSFOG00015021539	rif1	73	51.020	ENSCLAG00000001517	RIF1	61	54.145	Chinchilla_lanigera
ENSSFOG00015021539	rif1	75	53.349	ENSCSAG00000016089	RIF1	63	53.548	Chlorocebus_sabaeus
ENSSFOG00015021539	rif1	69	53.097	ENSCHOG00000007187	RIF1	59	53.540	Choloepus_hoffmanni
ENSSFOG00015021539	rif1	96	55.967	ENSCPBG00000025885	RIF1	73	53.942	Chrysemys_picta_bellii
ENSSFOG00015021539	rif1	65	57.466	ENSCANG00000028962	RIF1	61	57.466	Colobus_angolensis_palliatus
ENSSFOG00015021539	rif1	75	48.487	ENSCGRG00001024589	Rif1	66	49.885	Cricetulus_griseus_chok1gshd
ENSSFOG00015021539	rif1	73	50.151	ENSCGRG00000010713	Rif1	66	51.648	Cricetulus_griseus_crigri
ENSSFOG00015021539	rif1	78	68.699	ENSCSEG00000003945	rif1	75	68.699	Cynoglossus_semilaevis
ENSSFOG00015021539	rif1	80	59.270	ENSCVAG00000022479	rif1	75	59.270	Cyprinodon_variegatus
ENSSFOG00015021539	rif1	83	58.494	ENSDARG00000062650	rif1	70	63.380	Danio_rerio
ENSSFOG00015021539	rif1	88	48.896	ENSDNOG00000011194	RIF1	60	52.090	Dasypus_novemcinctus
ENSSFOG00015021539	rif1	69	49.196	ENSETEG00000012421	RIF1	63	49.196	Echinops_telfairi
ENSSFOG00015021539	rif1	70	66.149	ENSEASG00005023434	RIF1	61	66.149	Equus_asinus_asinus
ENSSFOG00015021539	rif1	80	65.363	ENSELUG00000006826	rif1	66	64.972	Esox_lucius
ENSSFOG00015021539	rif1	73	51.727	ENSFCAG00000029742	RIF1	65	52.878	Felis_catus
ENSSFOG00015021539	rif1	73	50.949	ENSFDAG00000006538	RIF1	62	53.339	Fukomys_damarensis
ENSSFOG00015021539	rif1	93	59.104	ENSFHEG00000013721	rif1	78	59.104	Fundulus_heteroclitus
ENSSFOG00015021539	rif1	67	62.500	ENSGMOG00000003517	rif1	90	62.500	Gadus_morhua
ENSSFOG00015021539	rif1	65	52.609	ENSGALG00000012484	RIF1	68	52.650	Gallus_gallus
ENSSFOG00015021539	rif1	79	65.340	ENSGAFG00000017196	rif1	71	65.340	Gambusia_affinis
ENSSFOG00015021539	rif1	73	66.667	ENSGACG00000008579	rif1	74	66.803	Gasterosteus_aculeatus
ENSSFOG00015021539	rif1	99	43.256	ENSGAGG00000012595	RIF1	71	50.782	Gopherus_agassizii
ENSSFOG00015021539	rif1	88	57.728	ENSHBUG00000007125	rif1	77	68.797	Haplochromis_burtoni
ENSSFOG00015021539	rif1	68	51.708	ENSHGLG00100009807	RIF1	63	55.249	Heterocephalus_glaber_male
ENSSFOG00015021539	rif1	72	59.748	ENSHCOG00000015943	rif1	61	60.127	Hippocampus_comes
ENSSFOG00015021539	rif1	71	68.485	ENSIPUG00000021703	rif1	77	68.485	Ictalurus_punctatus
ENSSFOG00015021539	rif1	84	50.949	ENSSTOG00000020712	RIF1	76	51.266	Ictidomys_tridecemlineatus
ENSSFOG00015021539	rif1	73	49.206	ENSJJAG00000023000	Rif1	66	50.348	Jaculus_jaculus
ENSSFOG00015021539	rif1	84	55.287	ENSKMAG00000002852	rif1	68	62.960	Kryptolebias_marmoratus
ENSSFOG00015021539	rif1	81	61.607	ENSLBEG00000023196	rif1	69	61.607	Labrus_bergylta
ENSSFOG00015021539	rif1	75	57.440	ENSLACG00000005425	RIF1	67	57.554	Latimeria_chalumnae
ENSSFOG00015021539	rif1	76	54.450	ENSLOCG00000002657	rif1	75	54.514	Lepisosteus_oculatus
ENSSFOG00015021539	rif1	75	51.098	ENSLAFG00000009796	RIF1	66	52.688	Loxodonta_africana
ENSSFOG00015021539	rif1	70	53.188	ENSMLEG00000042945	RIF1	63	53.387	Mandrillus_leucophaeus
ENSSFOG00015021539	rif1	85	66.168	ENSMAMG00000001745	rif1	65	66.168	Mastacembelus_armatus
ENSSFOG00015021539	rif1	84	60.440	ENSMZEG00005020920	rif1	84	60.440	Maylandia_zebra
ENSSFOG00015021539	rif1	68	55.574	ENSMGAG00000012732	RIF1	68	55.630	Meleagris_gallopavo
ENSSFOG00015021539	rif1	66	65.819	ENSMAUG00000013158	Rif1	63	65.819	Mesocricetus_auratus
ENSSFOG00015021539	rif1	75	50.514	ENSMICG00000046127	RIF1	65	52.160	Microcebus_murinus
ENSSFOG00015021539	rif1	85	49.051	ENSMOCG00000009381	Rif1	66	50.312	Microtus_ochrogaster
ENSSFOG00015021539	rif1	74	61.885	ENSMMOG00000006519	rif1	64	60.258	Mola_mola
ENSSFOG00015021539	rif1	69	52.048	ENSMODG00000003703	RIF1	64	51.083	Monodelphis_domestica
ENSSFOG00015021539	rif1	84	61.834	ENSMALG00000016759	rif1	79	61.834	Monopterus_albus
ENSSFOG00015021539	rif1	72	51.660	MGP_CAROLIEiJ_G0023555	Rif1	64	53.150	Mus_caroli
ENSSFOG00015021539	rif1	74	49.926	ENSMUSG00000036202	Rif1	65	51.193	Mus_musculus
ENSSFOG00015021539	rif1	72	49.211	MGP_PahariEiJ_G0025006	Rif1	63	50.324	Mus_pahari
ENSSFOG00015021539	rif1	57	51.008	ENSMLUG00000003376	RIF1	59	50.961	Myotis_lucifugus
ENSSFOG00015021539	rif1	83	48.571	ENSNGAG00000009268	Rif1	67	51.109	Nannospalax_galili
ENSSFOG00015021539	rif1	84	62.216	ENSNBRG00000014257	rif1	83	63.557	Neolamprologus_brichardi
ENSSFOG00015021539	rif1	75	52.278	ENSNLEG00000010955	RIF1	67	52.438	Nomascus_leucogenys
ENSSFOG00015021539	rif1	73	49.371	ENSODEG00000003950	RIF1	66	49.390	Octodon_degus
ENSSFOG00015021539	rif1	84	64.012	ENSONIG00000013657	rif1	74	75.000	Oreochromis_niloticus
ENSSFOG00015021539	rif1	70	58.239	ENSOANG00000006078	-	55	58.239	Ornithorhynchus_anatinus
ENSSFOG00015021539	rif1	69	53.231	ENSOCUG00000017435	RIF1	63	53.473	Oryctolagus_cuniculus
ENSSFOG00015021539	rif1	85	57.784	ENSORLG00020001302	rif1	68	60.856	Oryzias_latipes_hni
ENSSFOG00015021539	rif1	91	57.485	ENSORLG00015000009	rif1	68	61.340	Oryzias_latipes_hsok
ENSSFOG00015021539	rif1	70	53.032	ENSOGAG00000006141	RIF1	64	53.032	Otolemur_garnettii
ENSSFOG00015021539	rif1	83	49.684	ENSOARG00000008930	RIF1	62	54.045	Ovis_aries
ENSSFOG00015021539	rif1	75	53.193	ENSPPAG00000023754	RIF1	63	53.306	Pan_paniscus
ENSSFOG00015021539	rif1	73	51.504	ENSPPRG00000003618	RIF1	65	52.535	Panthera_pardus
ENSSFOG00015021539	rif1	73	51.504	ENSPTIG00000020652	RIF1	65	52.535	Panthera_tigris_altaica
ENSSFOG00015021539	rif1	75	53.274	ENSPTRG00000012534	RIF1	63	53.387	Pan_troglodytes
ENSSFOG00015021539	rif1	70	53.269	ENSPANG00000008525	RIF1	63	53.468	Papio_anubis
ENSSFOG00015021539	rif1	99	65.253	ENSPKIG00000004267	rif1	99	64.749	Paramormyrops_kingsleyae
ENSSFOG00015021539	rif1	87	54.108	ENSPMGG00000016141	rif1	93	54.122	Periophthalmus_magnuspinnatus
ENSSFOG00015021539	rif1	83	47.720	ENSPEMG00000000446	Rif1	63	53.117	Peromyscus_maniculatus_bairdii
ENSSFOG00015021539	rif1	72	50.661	ENSPCIG00000009185	RIF1	66	51.242	Phascolarctos_cinereus
ENSSFOG00015021539	rif1	72	61.143	ENSPFOG00000000554	-	65	63.142	Poecilia_formosa
ENSSFOG00015021539	rif1	80	61.143	ENSPFOG00000017804	rif1	68	63.124	Poecilia_formosa
ENSSFOG00015021539	rif1	80	62.928	ENSPLAG00000017945	rif1	71	58.104	Poecilia_latipinna
ENSSFOG00015021539	rif1	67	61.429	ENSPMEG00000006897	-	64	60.674	Poecilia_mexicana
ENSSFOG00015021539	rif1	80	58.203	ENSPREG00000018052	rif1	67	62.733	Poecilia_reticulata
ENSSFOG00015021539	rif1	70	53.150	ENSPPYG00000012846	RIF1	63	53.468	Pongo_abelii
ENSSFOG00015021539	rif1	79	53.215	ENSPCOG00000027888	RIF1	50	54.082	Propithecus_coquereli
ENSSFOG00015021539	rif1	60	59.919	ENSPVAG00000014276	RIF1	56	59.635	Pteropus_vampyrus
ENSSFOG00015021539	rif1	85	60.440	ENSPNYG00000012940	rif1	84	60.440	Pundamilia_nyererei
ENSSFOG00015021539	rif1	99	61.137	ENSPNAG00000016685	rif1	75	70.031	Pygocentrus_nattereri
ENSSFOG00015021539	rif1	70	50.525	ENSRNOG00000054901	Rif1	66	49.651	Rattus_norvegicus
ENSSFOG00015021539	rif1	75	52.666	ENSRBIG00000003704	RIF1	62	52.462	Rhinopithecus_bieti
ENSSFOG00015021539	rif1	75	53.430	ENSRROG00000028206	RIF1	63	53.672	Rhinopithecus_roxellana
ENSSFOG00015021539	rif1	66	55.952	ENSSBOG00000029530	RIF1	62	55.952	Saimiri_boliviensis_boliviensis
ENSSFOG00015021539	rif1	73	51.537	ENSSHAG00000018552	RIF1	64	51.537	Sarcophilus_harrisii
ENSSFOG00015021539	rif1	84	64.417	ENSSMAG00000011704	rif1	71	64.417	Scophthalmus_maximus
ENSSFOG00015021539	rif1	83	65.350	ENSSDUG00000015632	rif1	86	65.350	Seriola_dumerili
ENSSFOG00015021539	rif1	82	61.345	ENSSLDG00000019531	rif1	77	61.345	Seriola_lalandi_dorsalis
ENSSFOG00015021539	rif1	72	51.506	ENSSPUG00000003062	RIF1	69	52.304	Sphenodon_punctatus
ENSSFOG00015021539	rif1	62	69.935	ENSSPAG00000018359	rif1	98	69.935	Stegastes_partitus
ENSSFOG00015021539	rif1	69	53.441	ENSSSCG00000016395	RIF1	62	53.560	Sus_scrofa
ENSSFOG00015021539	rif1	51	58.506	ENSTGUG00000016761	RIF1	100	59.004	Taeniopygia_guttata
ENSSFOG00015021539	rif1	67	57.220	ENSTRUG00000015808	rif1	70	61.050	Takifugu_rubripes
ENSSFOG00015021539	rif1	61	64.286	ENSTBEG00000016082	RIF1	55	64.286	Tupaia_belangeri
ENSSFOG00015021539	rif1	69	53.927	ENSTTRG00000011190	RIF1	62	53.927	Tursiops_truncatus
ENSSFOG00015021539	rif1	58	51.497	ENSUAMG00000026385	RIF1	58	51.497	Ursus_americanus
ENSSFOG00015021539	rif1	69	52.946	ENSUMAG00000000337	RIF1	62	52.946	Ursus_maritimus
ENSSFOG00015021539	rif1	84	48.418	ENSVPAG00000002162	RIF1	64	50.807	Vicugna_pacos
ENSSFOG00015021539	rif1	69	51.238	ENSVVUG00000011293	RIF1	61	51.238	Vulpes_vulpes
ENSSFOG00015021539	rif1	91	47.024	ENSXETG00000004530	rif1	83	47.619	Xenopus_tropicalis
ENSSFOG00015021539	rif1	77	54.989	ENSXMAG00000000506	rif1	65	59.289	Xiphophorus_maculatus