EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015021851 (Gene tree)
Gene ID: 108928964
Gene Symbol: upf3a
Alias: -
Full Name: regulator of nonsense transcripts 3A-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 5502 bases
Position: chrKV410788.1:5626317-5631818
Accession: 108928964
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015034285	Smg4_UPF3	PF03467.15	1.7e-52	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015034663	-	1293	XM_018743179	ENSSFOP00015034285	430 (aa)	XP_018598695	-

Gene Model

Click here to download ENSSFOG00015021851's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03013	RNA transport	KEGG
sfm03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015021851's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015021851	upf3a	89	57.007	ENSG00000169062	UPF3A	88	57.007	Homo_sapiens
ENSSFOG00015021851	upf3a	99	71.491	ENSAPOG00000013484	upf3a	98	72.527	Acanthochromis_polyacanthus
ENSSFOG00015021851	upf3a	86	56.341	ENSAMEG00000004259	UPF3A	90	55.690	Ailuropoda_melanoleuca
ENSSFOG00015021851	upf3a	99	68.134	ENSACIG00000020468	upf3a	99	69.118	Amphilophus_citrinellus
ENSSFOG00015021851	upf3a	90	48.402	ENSACIG00000013582	upf3b	94	48.753	Amphilophus_citrinellus
ENSSFOG00015021851	upf3a	100	71.058	ENSAOCG00000020784	upf3a	99	71.922	Amphiprion_ocellaris
ENSSFOG00015021851	upf3a	86	49.165	ENSAOCG00000000706	upf3b	91	51.064	Amphiprion_ocellaris
ENSSFOG00015021851	upf3a	100	71.058	ENSAPEG00000003519	upf3a	99	71.922	Amphiprion_percula
ENSSFOG00015021851	upf3a	100	70.410	ENSATEG00000005843	upf3a	99	71.058	Anabas_testudineus
ENSSFOG00015021851	upf3a	88	61.631	ENSACAG00000001540	UPF3A	100	62.350	Anolis_carolinensis
ENSSFOG00015021851	upf3a	86	45.324	ENSANAG00000025598	-	71	71.014	Aotus_nancymaae
ENSSFOG00015021851	upf3a	88	55.476	ENSANAG00000021713	UPF3A	87	55.476	Aotus_nancymaae
ENSSFOG00015021851	upf3a	99	68.776	ENSACLG00000026274	upf3a	98	69.767	Astatotilapia_calliptera
ENSSFOG00015021851	upf3a	100	70.614	ENSAMXG00000002608	upf3a	100	71.930	Astyanax_mexicanus
ENSSFOG00015021851	upf3a	51	31.513	WBGene00004882	smg-4	51	34.078	Caenorhabditis_elegans
ENSSFOG00015021851	upf3a	93	52.667	ENSCJAG00000019102	UPF3A	94	52.655	Callithrix_jacchus
ENSSFOG00015021851	upf3a	93	52.298	ENSCAFG00000006504	UPF3A	98	48.822	Canis_familiaris
ENSSFOG00015021851	upf3a	93	52.298	ENSCAFG00020014268	UPF3A	83	52.580	Canis_lupus_dingo
ENSSFOG00015021851	upf3a	71	53.125	ENSTSYG00000001918	UPF3A	94	53.409	Carlito_syrichta
ENSSFOG00015021851	upf3a	76	55.285	ENSCPOG00000006824	UPF3A	85	55.285	Cavia_porcellus
ENSSFOG00015021851	upf3a	93	54.444	ENSCCAG00000018406	UPF3A	94	53.540	Cebus_capucinus
ENSSFOG00015021851	upf3a	89	58.824	ENSCATG00000029733	UPF3A	94	56.264	Cercocebus_atys
ENSSFOG00015021851	upf3a	89	58.637	ENSCSAG00000017388	UPF3A	94	56.109	Chlorocebus_sabaeus
ENSSFOG00015021851	upf3a	80	58.400	ENSCGRG00001017387	Upf3a	87	58.400	Cricetulus_griseus_chok1gshd
ENSSFOG00015021851	upf3a	80	58.400	ENSCGRG00000001468	Upf3a	87	58.400	Cricetulus_griseus_crigri
ENSSFOG00015021851	upf3a	81	52.261	ENSCSEG00000002046	upf3b	89	51.364	Cynoglossus_semilaevis
ENSSFOG00015021851	upf3a	100	68.696	ENSCSEG00000005106	upf3a	99	69.130	Cynoglossus_semilaevis
ENSSFOG00015021851	upf3a	99	68.928	ENSCVAG00000022333	upf3a	98	69.518	Cyprinodon_variegatus
ENSSFOG00015021851	upf3a	100	69.848	ENSDARG00000069297	upf3a	100	71.150	Danio_rerio
ENSSFOG00015021851	upf3a	84	57.039	ENSDNOG00000034391	UPF3A	93	57.178	Dasypus_novemcinctus
ENSSFOG00015021851	upf3a	92	50.577	ENSETEG00000010110	UPF3A	94	49.032	Echinops_telfairi
ENSSFOG00015021851	upf3a	96	54.084	ENSEASG00005021884	UPF3A	93	54.286	Equus_asinus_asinus
ENSSFOG00015021851	upf3a	96	54.505	ENSECAG00000017141	UPF3A	93	54.705	Equus_caballus
ENSSFOG00015021851	upf3a	51	68.103	ENSELUG00000020389	upf3b	59	71.429	Esox_lucius
ENSSFOG00015021851	upf3a	100	70.474	ENSELUG00000011050	upf3a	100	71.767	Esox_lucius
ENSSFOG00015021851	upf3a	93	54.846	ENSFCAG00000014602	UPF3A	94	54.626	Felis_catus
ENSSFOG00015021851	upf3a	69	72.289	ENSGMOG00000019615	upf3a	100	72.289	Gadus_morhua
ENSSFOG00015021851	upf3a	100	66.951	ENSGAFG00000021170	upf3a	99	69.612	Gambusia_affinis
ENSSFOG00015021851	upf3a	80	45.363	ENSGACG00000017435	upf3b	94	46.014	Gasterosteus_aculeatus
ENSSFOG00015021851	upf3a	69	76.012	ENSGACG00000001972	upf3a	100	75.701	Gasterosteus_aculeatus
ENSSFOG00015021851	upf3a	88	46.394	ENSGGOG00000041219	-	92	46.310	Gorilla_gorilla
ENSSFOG00015021851	upf3a	88	47.146	ENSGGOG00000043074	-	87	46.310	Gorilla_gorilla
ENSSFOG00015021851	upf3a	89	58.911	ENSGGOG00000015428	UPF3A	87	58.663	Gorilla_gorilla
ENSSFOG00015021851	upf3a	99	71.491	ENSHBUG00000011325	upf3a	98	72.527	Haplochromis_burtoni
ENSSFOG00015021851	upf3a	78	53.406	ENSHGLG00000001544	UPF3A	81	56.342	Heterocephalus_glaber_female
ENSSFOG00015021851	upf3a	78	53.406	ENSHGLG00100013244	UPF3A	81	56.342	Heterocephalus_glaber_male
ENSSFOG00015021851	upf3a	100	69.079	ENSIPUG00000023450	upf3a	100	70.678	Ictalurus_punctatus
ENSSFOG00015021851	upf3a	100	70.043	ENSKMAG00000004381	upf3a	99	70.043	Kryptolebias_marmoratus
ENSSFOG00015021851	upf3a	100	67.188	ENSLBEG00000021570	upf3a	100	66.449	Labrus_bergylta
ENSSFOG00015021851	upf3a	64	51.493	ENSLACG00000006645	UPF3A	79	51.493	Latimeria_chalumnae
ENSSFOG00015021851	upf3a	99	72.570	ENSLOCG00000002665	upf3a	100	73.866	Lepisosteus_oculatus
ENSSFOG00015021851	upf3a	87	59.542	ENSMFAG00000045016	UPF3A	85	59.542	Macaca_fascicularis
ENSSFOG00015021851	upf3a	87	58.794	ENSMMUG00000007449	UPF3A	94	56.776	Macaca_mulatta
ENSSFOG00015021851	upf3a	87	59.194	ENSMNEG00000036402	UPF3A	83	59.194	Macaca_nemestrina
ENSSFOG00015021851	upf3a	87	59.194	ENSMLEG00000014726	UPF3A	94	59.194	Mandrillus_leucophaeus
ENSSFOG00015021851	upf3a	99	68.644	ENSMAMG00000018364	upf3a	99	69.311	Mastacembelus_armatus
ENSSFOG00015021851	upf3a	99	68.776	ENSMZEG00005021571	upf3a	98	69.767	Maylandia_zebra
ENSSFOG00015021851	upf3a	84	61.443	ENSMGAG00000014837	UPF3A	99	61.538	Meleagris_gallopavo
ENSSFOG00015021851	upf3a	57	69.960	ENSMOCG00000000550	Upf3a	57	67.164	Microtus_ochrogaster
ENSSFOG00015021851	upf3a	99	68.008	ENSMMOG00000019751	upf3a	98	68.856	Mola_mola
ENSSFOG00015021851	upf3a	89	63.443	ENSMODG00000003159	UPF3A	99	63.765	Monodelphis_domestica
ENSSFOG00015021851	upf3a	87	45.412	ENSMODG00000010232	UPF3B	99	44.186	Monodelphis_domestica
ENSSFOG00015021851	upf3a	83	57.292	MGP_CAROLIEiJ_G0030848	Upf3a	91	57.292	Mus_caroli
ENSSFOG00015021851	upf3a	83	55.416	ENSMUSG00000038398	Upf3a	92	55.696	Mus_musculus
ENSSFOG00015021851	upf3a	80	58.311	MGP_PahariEiJ_G0021311	Upf3a	87	58.311	Mus_pahari
ENSSFOG00015021851	upf3a	83	55.190	MGP_SPRETEiJ_G0031958	Upf3a	92	55.190	Mus_spretus
ENSSFOG00015021851	upf3a	99	52.479	ENSMPUG00000009139	UPF3A	95	53.191	Mustela_putorius_furo
ENSSFOG00015021851	upf3a	89	56.308	ENSMLUG00000015905	UPF3A	99	56.542	Myotis_lucifugus
ENSSFOG00015021851	upf3a	79	56.676	ENSNGAG00000019314	Upf3a	87	56.948	Nannospalax_galili
ENSSFOG00015021851	upf3a	99	71.491	ENSNBRG00000000828	upf3a	98	72.527	Neolamprologus_brichardi
ENSSFOG00015021851	upf3a	95	55.455	ENSNLEG00000007563	UPF3A	92	55.455	Nomascus_leucogenys
ENSSFOG00015021851	upf3a	99	71.212	ENSONIG00000006817	upf3a	98	72.707	Oreochromis_niloticus
ENSSFOG00015021851	upf3a	87	43.387	ENSOANG00000002594	-	68	75.625	Ornithorhynchus_anatinus
ENSSFOG00015021851	upf3a	77	55.586	ENSOANG00000006985	-	95	55.858	Ornithorhynchus_anatinus
ENSSFOG00015021851	upf3a	89	50.868	ENSOCUG00000008450	UPF3A	94	48.430	Oryctolagus_cuniculus
ENSSFOG00015021851	upf3a	100	68.522	ENSORLG00000010911	upf3a	99	68.522	Oryzias_latipes
ENSSFOG00015021851	upf3a	100	67.603	ENSORLG00020014317	upf3a	99	67.819	Oryzias_latipes_hni
ENSSFOG00015021851	upf3a	60	68.750	ENSORLG00020003758	upf3b	65	61.386	Oryzias_latipes_hni
ENSSFOG00015021851	upf3a	100	68.683	ENSORLG00015017339	upf3a	58	68.683	Oryzias_latipes_hsok
ENSSFOG00015021851	upf3a	100	68.035	ENSOMEG00000014425	upf3a	99	68.898	Oryzias_melastigma
ENSSFOG00015021851	upf3a	72	60.174	ENSOGAG00000004788	UPF3A	83	60.465	Otolemur_garnettii
ENSSFOG00015021851	upf3a	89	55.687	ENSOARG00000009004	UPF3A	87	55.687	Ovis_aries
ENSSFOG00015021851	upf3a	89	56.532	ENSPPAG00000042267	UPF3A	94	54.000	Pan_paniscus
ENSSFOG00015021851	upf3a	93	54.405	ENSPPRG00000025062	UPF3A	94	54.185	Panthera_pardus
ENSSFOG00015021851	upf3a	89	56.295	ENSPTRG00000006073	UPF3A	94	53.778	Pan_troglodytes
ENSSFOG00015021851	upf3a	88	45.906	ENSPTRG00000041835	-	92	43.325	Pan_troglodytes
ENSSFOG00015021851	upf3a	88	47.619	ENSPTRG00000041187	-	92	45.038	Pan_troglodytes
ENSSFOG00015021851	upf3a	88	43.614	ENSPTRG00000051640	-	92	42.787	Pan_troglodytes
ENSSFOG00015021851	upf3a	88	58.495	ENSPANG00000004346	UPF3A	94	56.036	Papio_anubis
ENSSFOG00015021851	upf3a	89	48.966	ENSPKIG00000019226	upf3b	86	67.376	Paramormyrops_kingsleyae
ENSSFOG00015021851	upf3a	100	69.467	ENSPKIG00000004422	upf3a	100	69.672	Paramormyrops_kingsleyae
ENSSFOG00015021851	upf3a	89	61.814	ENSPSIG00000007468	UPF3A	99	61.814	Pelodiscus_sinensis
ENSSFOG00015021851	upf3a	99	64.496	ENSPMGG00000012696	upf3a	98	67.296	Periophthalmus_magnuspinnatus
ENSSFOG00015021851	upf3a	83	56.599	ENSPEMG00000019968	-	92	56.599	Peromyscus_maniculatus_bairdii
ENSSFOG00015021851	upf3a	97	50.229	ENSPCIG00000019590	-	87	72.381	Phascolarctos_cinereus
ENSSFOG00015021851	upf3a	100	68.683	ENSPFOG00000013222	upf3a	99	69.330	Poecilia_formosa
ENSSFOG00015021851	upf3a	100	69.476	ENSPLAG00000011960	upf3a	99	69.147	Poecilia_latipinna
ENSSFOG00015021851	upf3a	100	69.248	ENSPMEG00000000836	upf3a	99	66.874	Poecilia_mexicana
ENSSFOG00015021851	upf3a	89	56.295	ENSPPYG00000005536	UPF3A	88	57.007	Pongo_abelii
ENSSFOG00015021851	upf3a	91	54.756	ENSPVAG00000005656	UPF3A	99	51.025	Pteropus_vampyrus
ENSSFOG00015021851	upf3a	99	68.776	ENSPNYG00000011289	upf3a	98	69.767	Pundamilia_nyererei
ENSSFOG00015021851	upf3a	50	73.148	ENSPNAG00000021528	upf3b	63	74.847	Pygocentrus_nattereri
ENSSFOG00015021851	upf3a	100	70.614	ENSPNAG00000019532	upf3a	100	71.930	Pygocentrus_nattereri
ENSSFOG00015021851	upf3a	73	61.696	ENSRNOG00000017397	Upf3a	83	62.130	Rattus_norvegicus
ENSSFOG00015021851	upf3a	89	58.824	ENSRBIG00000034007	UPF3A	93	58.824	Rhinopithecus_bieti
ENSSFOG00015021851	upf3a	86	59.343	ENSRROG00000012212	UPF3A	85	59.343	Rhinopithecus_roxellana
ENSSFOG00015021851	upf3a	79	53.968	ENSSBOG00000029989	UPF3A	85	53.968	Saimiri_boliviensis_boliviensis
ENSSFOG00015021851	upf3a	87	64.146	ENSSHAG00000009895	UPF3A	97	64.146	Sarcophilus_harrisii
ENSSFOG00015021851	upf3a	100	65.377	ENSSMAG00000003858	upf3a	95	73.026	Scophthalmus_maximus
ENSSFOG00015021851	upf3a	99	68.856	ENSSDUG00000009680	upf3a	98	69.851	Seriola_dumerili
ENSSFOG00015021851	upf3a	99	71.272	ENSSLDG00000009700	upf3a	98	72.308	Seriola_lalandi_dorsalis
ENSSFOG00015021851	upf3a	79	47.884	ENSSARG00000007262	UPF3A	92	46.296	Sorex_araneus
ENSSFOG00015021851	upf3a	91	54.042	ENSSSCG00000024679	UPF3A	85	54.023	Sus_scrofa
ENSSFOG00015021851	upf3a	83	64.557	ENSTGUG00000009493	UPF3A	99	64.467	Taeniopygia_guttata
ENSSFOG00015021851	upf3a	99	67.105	ENSTRUG00000012730	upf3a	99	67.763	Takifugu_rubripes
ENSSFOG00015021851	upf3a	83	50.864	ENSTRUG00000010645	upf3b	89	51.589	Takifugu_rubripes
ENSSFOG00015021851	upf3a	89	49.757	ENSTNIG00000015763	upf3b	92	50.485	Tetraodon_nigroviridis
ENSSFOG00015021851	upf3a	84	62.698	ENSTNIG00000014973	upf3a	100	61.266	Tetraodon_nigroviridis
ENSSFOG00015021851	upf3a	61	49.158	ENSTBEG00000017186	-	94	49.832	Tupaia_belangeri
ENSSFOG00015021851	upf3a	80	50.914	ENSTTRG00000015414	UPF3A	77	50.653	Tursiops_truncatus
ENSSFOG00015021851	upf3a	80	57.441	ENSVPAG00000003525	UPF3A	94	58.073	Vicugna_pacos
ENSSFOG00015021851	upf3a	91	53.613	ENSVVUG00000013538	UPF3A	89	52.489	Vulpes_vulpes
ENSSFOG00015021851	upf3a	91	50.588	ENSXETG00000002572	upf3a	50	68.075	Xenopus_tropicalis
ENSSFOG00015021851	upf3a	87	43.062	ENSXETG00000007440	upf3b	71	73.780	Xenopus_tropicalis
ENSSFOG00015021851	upf3a	100	61.224	ENSXCOG00000018591	upf3a	99	68.172	Xiphophorus_couchianus
ENSSFOG00015021851	upf3a	100	69.704	ENSXMAG00000013452	upf3a	99	69.828	Xiphophorus_maculatus