EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015021896 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain containing 1b%2C with ZNF domain
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 17745 bases
Position: chrKV410964.1:1193149-1210893
Accession: ZDB-GENE-080618-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015034376	zf-C2H2	PF00096.26	2.2e-15	1	3
ENSSFOP00015034376	zf-C2H2	PF00096.26	2.2e-15	2	3
ENSSFOP00015034376	zf-C2H2	PF00096.26	2.2e-15	3	3
ENSSFOP00015034376	zf-met	PF12874.7	0.00013	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015034754	-	2040	-	ENSSFOP00015034376	679 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015021896's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015021896's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015021896	prdm1b	65	33.071	ENSSFOG00015013930	PRDM15	68	33.065

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015021896	prdm1b	52	65.753	ENSAPOG00000022084	prdm1b	80	65.753	Acanthochromis_polyacanthus
ENSSFOG00015021896	prdm1b	92	40.948	ENSAPOG00000014135	-	56	56.299	Acanthochromis_polyacanthus
ENSSFOG00015021896	prdm1b	77	58.289	ENSACIG00000014426	prdm1b	90	58.289	Amphilophus_citrinellus
ENSSFOG00015021896	prdm1b	70	53.293	ENSACIG00000009747	-	61	53.293	Amphilophus_citrinellus
ENSSFOG00015021896	prdm1b	77	62.774	ENSAOCG00000002230	prdm1b	96	61.879	Amphiprion_ocellaris
ENSSFOG00015021896	prdm1b	92	65.055	ENSAPEG00000019826	prdm1b	95	64.231	Amphiprion_percula
ENSSFOG00015021896	prdm1b	66	51.852	ENSATEG00000014034	-	57	51.852	Anabas_testudineus
ENSSFOG00015021896	prdm1b	61	61.207	ENSATEG00000021017	prdm1a	58	61.207	Anabas_testudineus
ENSSFOG00015021896	prdm1b	79	60.315	ENSATEG00000006924	prdm1b	92	60.664	Anabas_testudineus
ENSSFOG00015021896	prdm1b	78	59.464	ENSACLG00000005487	prdm1b	87	59.464	Astatotilapia_calliptera
ENSSFOG00015021896	prdm1b	72	53.261	ENSCSEG00000009707	prdm1a	54	60.776	Cynoglossus_semilaevis
ENSSFOG00015021896	prdm1b	57	60.345	ENSCVAG00000019081	prdm1a	54	60.345	Cyprinodon_variegatus
ENSSFOG00015021896	prdm1b	92	63.150	ENSCVAG00000016746	prdm1b	92	63.914	Cyprinodon_variegatus
ENSSFOG00015021896	prdm1b	77	60.364	ENSFHEG00000019848	prdm1b	90	60.364	Fundulus_heteroclitus
ENSSFOG00015021896	prdm1b	79	73.684	ENSGAFG00000016191	prdm1b	90	58.834	Gambusia_affinis
ENSSFOG00015021896	prdm1b	63	55.952	ENSGAFG00000013012	-	56	55.952	Gambusia_affinis
ENSSFOG00015021896	prdm1b	92	56.938	ENSGACG00000002716	prdm1b	99	57.368	Gasterosteus_aculeatus
ENSSFOG00015021896	prdm1b	77	60.072	ENSHBUG00000001475	prdm1b	92	60.072	Haplochromis_burtoni
ENSSFOG00015021896	prdm1b	77	58.813	ENSHCOG00000003617	prdm1b	90	58.813	Hippocampus_comes
ENSSFOG00015021896	prdm1b	85	68.235	ENSIPUG00000013740	prdm1b	94	54.766	Ictalurus_punctatus
ENSSFOG00015021896	prdm1b	78	54.491	ENSKMAG00000016247	-	71	54.491	Kryptolebias_marmoratus
ENSSFOG00015021896	prdm1b	78	59.459	ENSKMAG00000011218	prdm1b	89	59.459	Kryptolebias_marmoratus
ENSSFOG00015021896	prdm1b	92	62.199	ENSLBEG00000020955	prdm1b	92	62.199	Labrus_bergylta
ENSSFOG00015021896	prdm1b	78	67.442	ENSLOCG00000004978	prdm1b	90	53.041	Lepisosteus_oculatus
ENSSFOG00015021896	prdm1b	78	58.393	ENSMZEG00005026361	prdm1b	86	58.393	Maylandia_zebra
ENSSFOG00015021896	prdm1b	77	60.644	ENSMMOG00000013458	prdm1b	92	60.644	Mola_mola
ENSSFOG00015021896	prdm1b	70	53.374	ENSMALG00000000462	-	61	53.374	Monopterus_albus
ENSSFOG00015021896	prdm1b	77	59.643	ENSMALG00000011410	prdm1b	92	59.821	Monopterus_albus
ENSSFOG00015021896	prdm1b	89	71.739	ENSONIG00000013583	prdm1b	84	71.739	Oreochromis_niloticus
ENSSFOG00015021896	prdm1b	63	54.491	ENSONIG00000014709	-	50	61.682	Oreochromis_niloticus
ENSSFOG00015021896	prdm1b	77	58.059	ENSORLG00000010025	prdm1b	92	58.232	Oryzias_latipes
ENSSFOG00015021896	prdm1b	77	57.513	ENSORLG00015009022	prdm1b	91	57.858	Oryzias_latipes_hsok
ENSSFOG00015021896	prdm1b	92	59.206	ENSPKIG00000022335	prdm1b	90	60.353	Paramormyrops_kingsleyae
ENSSFOG00015021896	prdm1b	88	54.186	ENSPFOG00000003103	prdm1b	82	72.067	Poecilia_formosa
ENSSFOG00015021896	prdm1b	78	59.187	ENSPLAG00000018491	prdm1b	90	59.187	Poecilia_latipinna
ENSSFOG00015021896	prdm1b	78	59.541	ENSPMEG00000007869	prdm1b	90	60.144	Poecilia_mexicana
ENSSFOG00015021896	prdm1b	92	58.222	ENSPREG00000011327	prdm1b	90	59.646	Poecilia_reticulata
ENSSFOG00015021896	prdm1b	66	55.676	ENSPVAG00000011732	PRDM1	58	55.676	Pteropus_vampyrus
ENSSFOG00015021896	prdm1b	94	42.641	ENSPNAG00000028442	prdm1a	90	42.936	Pygocentrus_nattereri
ENSSFOG00015021896	prdm1b	65	52.708	ENSSMAG00000017518	-	57	52.708	Scophthalmus_maximus
ENSSFOG00015021896	prdm1b	93	63.134	ENSSMAG00000020467	prdm1b	92	63.134	Scophthalmus_maximus
ENSSFOG00015021896	prdm1b	77	61.989	ENSSDUG00000020610	prdm1b	90	61.989	Seriola_dumerili
ENSSFOG00015021896	prdm1b	64	54.753	ENSSDUG00000000524	-	55	54.753	Seriola_dumerili
ENSSFOG00015021896	prdm1b	92	63.636	ENSSLDG00000021973	prdm1b	92	63.636	Seriola_lalandi_dorsalis
ENSSFOG00015021896	prdm1b	61	56.225	ENSSLDG00000001957	-	53	56.225	Seriola_lalandi_dorsalis
ENSSFOG00015021896	prdm1b	77	63.321	ENSSPAG00000000803	prdm1b	96	63.051	Stegastes_partitus
ENSSFOG00015021896	prdm1b	60	56.735	ENSSPAG00000009830	-	52	56.735	Stegastes_partitus
ENSSFOG00015021896	prdm1b	92	62.751	ENSXCOG00000018920	prdm1b	94	62.751	Xiphophorus_couchianus
ENSSFOG00015021896	prdm1b	92	57.080	ENSXMAG00000016765	prdm1b	90	60.182	Xiphophorus_maculatus