EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015021996 (Gene tree)
Gene ID: 108934325
Gene Symbol: sf1
Alias: rbm4l|wu:fc25a01
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 9471 bases
Position: chrKV411071.1:2934330-2943800
Accession: 108934325
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015034519	zf-CCHC	PF00098.23	2.4e-07	1	1
ENSSFOP00015034523	zf-CCHC	PF00098.23	2.4e-07	1	1
ENSSFOP00015034519	RRM_5	PF13893.6	1.5e-08	1	1
ENSSFOP00015034523	RRM_5	PF13893.6	1.5e-08	1	1
ENSSFOP00015034519	RRM_1	PF00076.22	1.4e-32	1	2
ENSSFOP00015034519	RRM_1	PF00076.22	1.4e-32	2	2
ENSSFOP00015034523	RRM_1	PF00076.22	1.4e-32	1	2
ENSSFOP00015034523	RRM_1	PF00076.22	1.4e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015034903	-	6558	-	ENSSFOP00015034523	420 (aa)	-	A0A1W5A2L9
ENSSFOT00015034897	-	5963	XM_018751952	ENSSFOP00015034519	420 (aa)	XP_018607468	A0A1W5A2L9

Gene Model

Click here to download ENSSFOG00015021996's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015021996's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015021996	sf1	99	36.603	ENSSFOG00015015563	rbm4.3	80	58.278

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015021996	sf1	100	64.252	ENSAPOG00000012353	rbm4.1	100	64.252	Acanthochromis_polyacanthus
ENSSFOG00015021996	sf1	100	64.019	ENSACIG00000016482	rbm4.1	100	64.720	Amphilophus_citrinellus
ENSSFOG00015021996	sf1	100	64.486	ENSAOCG00000010915	rbm4.1	100	64.486	Amphiprion_ocellaris
ENSSFOG00015021996	sf1	100	64.486	ENSAPEG00000009494	rbm4.1	100	64.486	Amphiprion_percula
ENSSFOG00015021996	sf1	100	63.785	ENSATEG00000001904	rbm4.1	100	64.252	Anabas_testudineus
ENSSFOG00015021996	sf1	99	46.905	ENSACLG00000007740	-	99	48.694	Astatotilapia_calliptera
ENSSFOG00015021996	sf1	100	64.019	ENSACLG00000007722	rbm4.1	100	64.720	Astatotilapia_calliptera
ENSSFOG00015021996	sf1	100	64.941	ENSAMXG00000036611	rbm4.1	100	64.554	Astyanax_mexicanus
ENSSFOG00015021996	sf1	100	57.773	ENSCSEG00000014365	rbm4.1	100	57.541	Cynoglossus_semilaevis
ENSSFOG00015021996	sf1	100	62.150	ENSCVAG00000019349	rbm4.1	100	60.698	Cyprinodon_variegatus
ENSSFOG00015021996	sf1	100	68.692	ENSDARG00000036386	rbm4.1	100	66.979	Danio_rerio
ENSSFOG00015021996	sf1	100	66.279	ENSELUG00000013205	rbm4.1	100	65.035	Esox_lucius
ENSSFOG00015021996	sf1	100	63.403	ENSFHEG00000022926	rbm4.1	100	61.717	Fundulus_heteroclitus
ENSSFOG00015021996	sf1	100	58.701	ENSGMOG00000007464	rbm4.1	100	59.353	Gadus_morhua
ENSSFOG00015021996	sf1	100	62.558	ENSGAFG00000019302	rbm4.1	100	61.111	Gambusia_affinis
ENSSFOG00015021996	sf1	94	48.990	ENSGACG00000000821	-	50	69.312	Gasterosteus_aculeatus
ENSSFOG00015021996	sf1	96	80.110	ENSGACG00000000822	rbm4.1	97	80.110	Gasterosteus_aculeatus
ENSSFOG00015021996	sf1	100	64.019	ENSHBUG00000011610	rbm4.1	100	64.720	Haplochromis_burtoni
ENSSFOG00015021996	sf1	93	58.056	ENSHCOG00000011403	rbm4.1	95	58.312	Hippocampus_comes
ENSSFOG00015021996	sf1	100	63.554	ENSIPUG00000022931	rbm4.1	100	63.554	Ictalurus_punctatus
ENSSFOG00015021996	sf1	100	55.869	ENSIPUG00000022937	rbm4.2	100	55.164	Ictalurus_punctatus
ENSSFOG00015021996	sf1	97	63.462	ENSKMAG00000006556	rbm4.1	98	61.483	Kryptolebias_marmoratus
ENSSFOG00015021996	sf1	100	62.295	ENSLBEG00000019782	rbm4.1	100	62.529	Labrus_bergylta
ENSSFOG00015021996	sf1	98	50.240	ENSLBEG00000019756	-	90	62.821	Labrus_bergylta
ENSSFOG00015021996	sf1	100	63.551	ENSMAMG00000001765	rbm4.1	100	64.252	Mastacembelus_armatus
ENSSFOG00015021996	sf1	98	50.120	ENSMAMG00000001760	-	98	50.121	Mastacembelus_armatus
ENSSFOG00015021996	sf1	100	64.019	ENSMZEG00005009205	rbm4.1	100	64.720	Maylandia_zebra
ENSSFOG00015021996	sf1	61	33.840	ENSMZEG00005028158	-	72	37.597	Maylandia_zebra
ENSSFOG00015021996	sf1	100	64.103	ENSMMOG00000020479	rbm4.1	100	64.501	Mola_mola
ENSSFOG00015021996	sf1	97	63.614	ENSMALG00000020544	rbm4.1	97	62.590	Monopterus_albus
ENSSFOG00015021996	sf1	98	47.706	ENSMALG00000020557	-	98	50.481	Monopterus_albus
ENSSFOG00015021996	sf1	100	64.019	ENSNBRG00000017755	rbm4.1	100	64.720	Neolamprologus_brichardi
ENSSFOG00015021996	sf1	100	64.019	ENSONIG00000015730	rbm4.1	100	64.720	Oreochromis_niloticus
ENSSFOG00015021996	sf1	97	61.446	ENSORLG00000012496	rbm4.1	97	61.205	Oryzias_latipes
ENSSFOG00015021996	sf1	97	61.446	ENSORLG00020012454	rbm4.1	97	61.205	Oryzias_latipes_hni
ENSSFOG00015021996	sf1	100	60.422	ENSORLG00015013678	rbm4.1	100	60.187	Oryzias_latipes_hsok
ENSSFOG00015021996	sf1	100	61.253	ENSOMEG00000001001	rbm4.1	100	60.422	Oryzias_melastigma
ENSSFOG00015021996	sf1	100	91.253	ENSPKIG00000020805	rbm4.1	100	91.253	Paramormyrops_kingsleyae
ENSSFOG00015021996	sf1	100	62.558	ENSPFOG00000012675	rbm4.1	100	61.111	Poecilia_formosa
ENSSFOG00015021996	sf1	99	45.673	ENSPFOG00000012685	-	86	67.742	Poecilia_formosa
ENSSFOG00015021996	sf1	100	62.558	ENSPLAG00000018572	rbm4.1	100	61.111	Poecilia_latipinna
ENSSFOG00015021996	sf1	100	62.558	ENSPMEG00000006290	rbm4.1	100	61.111	Poecilia_mexicana
ENSSFOG00015021996	sf1	99	62.562	ENSPREG00000003764	-	93	65.789	Poecilia_reticulata
ENSSFOG00015021996	sf1	100	62.558	ENSPREG00000003724	rbm4.1	100	61.111	Poecilia_reticulata
ENSSFOG00015021996	sf1	100	64.019	ENSPNYG00000004662	rbm4.1	100	64.720	Pundamilia_nyererei
ENSSFOG00015021996	sf1	100	51.756	ENSPNAG00000013057	rbm4.2	100	52.225	Pygocentrus_nattereri
ENSSFOG00015021996	sf1	100	69.321	ENSPNAG00000002539	rbm4.1	100	69.087	Pygocentrus_nattereri
ENSSFOG00015021996	sf1	100	62.529	ENSSMAG00000007571	rbm4.1	100	62.061	Scophthalmus_maximus
ENSSFOG00015021996	sf1	98	52.404	ENSSDUG00000003936	-	98	50.350	Seriola_dumerili
ENSSFOG00015021996	sf1	100	63.551	ENSSDUG00000003925	rbm4.1	100	64.252	Seriola_dumerili
ENSSFOG00015021996	sf1	100	63.551	ENSSLDG00000013147	rbm4.1	100	64.252	Seriola_lalandi_dorsalis
ENSSFOG00015021996	sf1	100	63.403	ENSSPAG00000019053	rbm4.1	100	64.569	Stegastes_partitus
ENSSFOG00015021996	sf1	98	48.317	ENSSPAG00000019046	-	98	45.708	Stegastes_partitus
ENSSFOG00015021996	sf1	100	61.124	ENSTRUG00000013334	rbm4.1	100	60.187	Takifugu_rubripes
ENSSFOG00015021996	sf1	77	75.743	ENSTNIG00000004821	rbm4.1	94	80.645	Tetraodon_nigroviridis
ENSSFOG00015021996	sf1	83	65.657	ENSXETG00000026649	rbm4b	85	70.391	Xenopus_tropicalis
ENSSFOG00015021996	sf1	100	62.791	ENSXCOG00000003731	rbm4.1	100	61.111	Xiphophorus_couchianus
ENSSFOG00015021996	sf1	100	62.791	ENSXMAG00000008069	rbm4.1	100	61.111	Xiphophorus_maculatus
ENSSFOG00015021996	sf1	95	69.939	ENSXMAG00000008059	-	86	69.939	Xiphophorus_maculatus