EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015022042 (Gene tree)
Gene ID: 108930573
Gene Symbol: -
Alias: -
Full Name: survival motor neuron protein-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 9432 bases
Position: chrKV410925.1:2569729-2579160
Accession: 108930573
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015034603	SMN	PF06003.12	1.1e-38	1	2
ENSSFOP00015034603	SMN	PF06003.12	1.1e-38	2	2
ENSSFOP00015034586	SMN	PF06003.12	2.8e-29	1	2
ENSSFOP00015034586	SMN	PF06003.12	2.8e-29	2	2
ENSSFOP00015034619	SMN	PF06003.12	3.3e-29	1	2
ENSSFOP00015034619	SMN	PF06003.12	3.3e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015034983	-	4783	-	ENSSFOP00015034603	380 (aa)	-	-
ENSSFOT00015034967	-	4811	XM_018745868	ENSSFOP00015034586	447 (aa)	XP_018601384	-
ENSSFOT00015034999	-	4723	-	ENSSFOP00015034619	458 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015022042's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015022042's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015022042	-	88	35.965	ENSSFOG00015015507	smn1	91	37.607

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015022042	-	86	32.047	ENSATEG00000005614	-	91	33.138	Anabas_testudineus
ENSSFOG00015022042	-	88	38.660	ENSACLG00000002833	-	96	33.524	Astatotilapia_calliptera
ENSSFOG00015022042	-	51	49.091	ENSCPBG00000012368	-	70	44.872	Chrysemys_picta_bellii
ENSSFOG00015022042	-	87	30.685	ENSMZEG00005003112	-	96	33.051	Maylandia_zebra
ENSSFOG00015022042	-	88	34.795	ENSMALG00000020522	-	95	33.333	Monopterus_albus
ENSSFOG00015022042	-	91	51.676	ENSPKIG00000003398	-	94	51.966	Paramormyrops_kingsleyae
ENSSFOG00015022042	-	70	53.448	ENSPFOG00000022021	-	90	53.448	Poecilia_formosa
ENSSFOG00015022042	-	86	34.884	ENSSDUG00000020881	-	91	34.808	Seriola_dumerili
ENSSFOG00015022042	-	85	34.203	ENSSLDG00000013900	-	93	35.475	Seriola_lalandi_dorsalis