EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015022124 (Gene tree)
Gene ID: 108940434
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 4270 bases
Position: chrKV411209.1:1070760-1075029
Accession: 108940434
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015034726	TruB_N	PF01509.18	4.8e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015035106	-	2791	XM_018762593	ENSSFOP00015034726	293 (aa)	XP_018618109	A0A1W5AXX2

Gene Model

Click here to download ENSSFOG00015022124's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015022124's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015022124	trub1	83	70.370	ENSG00000165832	TRUB1	70	70.370	Homo_sapiens
ENSSFOG00015022124	trub1	83	79.424	ENSAPOG00000020565	trub1	98	74.182	Acanthochromis_polyacanthus
ENSSFOG00015022124	trub1	83	69.388	ENSAMEG00000014931	TRUB1	70	69.388	Ailuropoda_melanoleuca
ENSSFOG00015022124	trub1	88	71.815	ENSACIG00000003060	trub1	86	71.815	Amphilophus_citrinellus
ENSSFOG00015022124	trub1	83	79.424	ENSAOCG00000017188	trub1	98	74.182	Amphiprion_ocellaris
ENSSFOG00015022124	trub1	89	77.692	ENSAPEG00000015209	trub1	98	74.909	Amphiprion_percula
ENSSFOG00015022124	trub1	87	77.344	ENSATEG00000023291	trub1	92	77.344	Anabas_testudineus
ENSSFOG00015022124	trub1	88	68.441	ENSAPLG00000006808	TRUB1	94	68.441	Anas_platyrhynchos
ENSSFOG00015022124	trub1	85	66.800	ENSACAG00000009282	TRUB1	90	66.800	Anolis_carolinensis
ENSSFOG00015022124	trub1	83	69.959	ENSANAG00000022870	TRUB1	69	69.959	Aotus_nancymaae
ENSSFOG00015022124	trub1	88	77.992	ENSACLG00000000823	trub1	93	77.992	Astatotilapia_calliptera
ENSSFOG00015022124	trub1	95	71.942	ENSAMXG00000015845	trub1	93	71.942	Astyanax_mexicanus
ENSSFOG00015022124	trub1	83	70.782	ENSBTAG00000012955	TRUB1	69	70.782	Bos_taurus
ENSSFOG00015022124	trub1	83	69.959	ENSCJAG00000047815	TRUB1	69	69.959	Callithrix_jacchus
ENSSFOG00015022124	trub1	83	70.370	ENSCAFG00000011688	TRUB1	69	70.370	Canis_familiaris
ENSSFOG00015022124	trub1	83	70.370	ENSCAFG00020013237	TRUB1	69	70.370	Canis_lupus_dingo
ENSSFOG00015022124	trub1	83	70.782	ENSCHIG00000020884	TRUB1	73	70.782	Capra_hircus
ENSSFOG00015022124	trub1	83	69.547	ENSTSYG00000000446	TRUB1	69	69.547	Carlito_syrichta
ENSSFOG00015022124	trub1	82	56.432	ENSCAPG00000017088	TRUB1	91	56.432	Cavia_aperea
ENSSFOG00015022124	trub1	63	66.129	ENSCPOG00000030129	-	72	66.129	Cavia_porcellus
ENSSFOG00015022124	trub1	62	66.667	ENSCPOG00000040236	-	75	66.667	Cavia_porcellus
ENSSFOG00015022124	trub1	83	69.959	ENSCCAG00000028842	TRUB1	69	69.959	Cebus_capucinus
ENSSFOG00015022124	trub1	83	69.959	ENSCATG00000033431	TRUB1	69	69.959	Cercocebus_atys
ENSSFOG00015022124	trub1	62	65.574	ENSCLAG00000008664	TRUB1	75	65.574	Chinchilla_lanigera
ENSSFOG00015022124	trub1	83	69.959	ENSCSAG00000004891	TRUB1	69	69.959	Chlorocebus_sabaeus
ENSSFOG00015022124	trub1	83	62.140	ENSCHOG00000011931	TRUB1	70	62.140	Choloepus_hoffmanni
ENSSFOG00015022124	trub1	83	74.486	ENSCPBG00000003051	TRUB1	84	74.486	Chrysemys_picta_bellii
ENSSFOG00015022124	trub1	83	69.959	ENSCANG00000029445	TRUB1	69	69.959	Colobus_angolensis_palliatus
ENSSFOG00015022124	trub1	81	62.288	ENSCGRG00001010322	-	69	58.915	Cricetulus_griseus_chok1gshd
ENSSFOG00015022124	trub1	72	70.952	ENSCGRG00001016772	-	70	70.283	Cricetulus_griseus_chok1gshd
ENSSFOG00015022124	trub1	81	69.492	ENSCGRG00000010806	Trub1	79	66.795	Cricetulus_griseus_crigri
ENSSFOG00015022124	trub1	86	74.603	ENSCSEG00000011261	trub1	82	74.603	Cynoglossus_semilaevis
ENSSFOG00015022124	trub1	86	77.778	ENSCVAG00000008791	trub1	77	77.778	Cyprinodon_variegatus
ENSSFOG00015022124	trub1	99	70.000	ENSDARG00000053805	trub1	99	87.500	Danio_rerio
ENSSFOG00015022124	trub1	83	67.490	ENSDNOG00000001069	TRUB1	76	63.534	Dasypus_novemcinctus
ENSSFOG00015022124	trub1	81	69.492	ENSDORG00000010431	Trub1	70	69.136	Dipodomys_ordii
ENSSFOG00015022124	trub1	60	67.500	ENSETEG00000009183	TRUB1	50	67.500	Echinops_telfairi
ENSSFOG00015022124	trub1	83	70.370	ENSEASG00005014739	TRUB1	69	70.370	Equus_asinus_asinus
ENSSFOG00015022124	trub1	83	70.370	ENSECAG00000007177	TRUB1	69	70.370	Equus_caballus
ENSSFOG00015022124	trub1	83	61.317	ENSEEUG00000013993	TRUB1	68	61.317	Erinaceus_europaeus
ENSSFOG00015022124	trub1	90	74.812	ENSELUG00000000502	trub1	93	74.812	Esox_lucius
ENSSFOG00015022124	trub1	87	68.504	ENSFCAG00000031927	TRUB1	70	70.782	Felis_catus
ENSSFOG00015022124	trub1	73	72.770	ENSFALG00000002232	TRUB1	82	72.770	Ficedula_albicollis
ENSSFOG00015022124	trub1	62	66.667	ENSFDAG00000008140	TRUB1	84	61.951	Fukomys_damarensis
ENSSFOG00015022124	trub1	88	76.062	ENSFHEG00000004016	trub1	89	76.062	Fundulus_heteroclitus
ENSSFOG00015022124	trub1	88	69.112	ENSGALG00000009091	TRUB1	89	69.112	Gallus_gallus
ENSSFOG00015022124	trub1	87	75.000	ENSGAFG00000009193	trub1	89	74.609	Gambusia_affinis
ENSSFOG00015022124	trub1	69	75.490	ENSGACG00000015387	trub1	100	75.490	Gasterosteus_aculeatus
ENSSFOG00015022124	trub1	88	71.705	ENSGAGG00000009758	TRUB1	71	71.705	Gopherus_agassizii
ENSSFOG00015022124	trub1	83	70.370	ENSGGOG00000004583	TRUB1	70	70.370	Gorilla_gorilla
ENSSFOG00015022124	trub1	88	77.606	ENSHBUG00000016787	trub1	93	77.606	Haplochromis_burtoni
ENSSFOG00015022124	trub1	83	68.595	ENSHGLG00000015314	TRUB1	69	68.595	Heterocephalus_glaber_female
ENSSFOG00015022124	trub1	62	66.120	ENSHGLG00100009183	TRUB1	77	66.120	Heterocephalus_glaber_male
ENSSFOG00015022124	trub1	95	72.662	ENSHCOG00000017877	trub1	96	72.662	Hippocampus_comes
ENSSFOG00015022124	trub1	96	70.423	ENSIPUG00000017559	trub1	89	76.587	Ictalurus_punctatus
ENSSFOG00015022124	trub1	81	70.464	ENSSTOG00000003641	TRUB1	72	70.464	Ictidomys_tridecemlineatus
ENSSFOG00015022124	trub1	83	69.136	ENSJJAG00000011800	Trub1	71	69.136	Jaculus_jaculus
ENSSFOG00015022124	trub1	89	76.538	ENSKMAG00000006232	trub1	94	76.538	Kryptolebias_marmoratus
ENSSFOG00015022124	trub1	92	74.539	ENSLBEG00000026722	trub1	93	74.539	Labrus_bergylta
ENSSFOG00015022124	trub1	91	68.382	ENSLACG00000014885	TRUB1	90	68.382	Latimeria_chalumnae
ENSSFOG00015022124	trub1	88	79.537	ENSLOCG00000012979	trub1	87	79.537	Lepisosteus_oculatus
ENSSFOG00015022124	trub1	83	69.136	ENSLAFG00000015452	TRUB1	69	69.136	Loxodonta_africana
ENSSFOG00015022124	trub1	83	69.959	ENSMFAG00000031767	TRUB1	69	69.959	Macaca_fascicularis
ENSSFOG00015022124	trub1	83	69.959	ENSMMUG00000001902	TRUB1	69	69.959	Macaca_mulatta
ENSSFOG00015022124	trub1	83	64.198	ENSMNEG00000044646	TRUB1	69	63.786	Macaca_nemestrina
ENSSFOG00015022124	trub1	83	69.959	ENSMLEG00000042655	TRUB1	69	69.959	Mandrillus_leucophaeus
ENSSFOG00015022124	trub1	88	77.992	ENSMZEG00005024095	trub1	93	77.992	Maylandia_zebra
ENSSFOG00015022124	trub1	88	68.340	ENSMGAG00000011135	TRUB1	87	68.340	Meleagris_gallopavo
ENSSFOG00015022124	trub1	85	64.940	ENSMAUG00000011101	Trub1	71	67.078	Mesocricetus_auratus
ENSSFOG00015022124	trub1	83	69.959	ENSMICG00000016324	TRUB1	70	69.959	Microcebus_murinus
ENSSFOG00015022124	trub1	82	69.167	ENSMOCG00000017759	Trub1	75	68.826	Microtus_ochrogaster
ENSSFOG00015022124	trub1	83	72.727	ENSMODG00000009676	TRUB1	70	70.196	Monodelphis_domestica
ENSSFOG00015022124	trub1	82	68.619	MGP_CAROLIEiJ_G0023100	Trub1	79	64.433	Mus_caroli
ENSSFOG00015022124	trub1	82	67.782	ENSMUSG00000025086	Trub1	79	63.402	Mus_musculus
ENSSFOG00015022124	trub1	83	67.901	MGP_PahariEiJ_G0014588	Trub1	72	67.901	Mus_pahari
ENSSFOG00015022124	trub1	82	67.782	MGP_SPRETEiJ_G0024021	Trub1	79	63.402	Mus_spretus
ENSSFOG00015022124	trub1	83	70.370	ENSMPUG00000003556	TRUB1	69	70.370	Mustela_putorius_furo
ENSSFOG00015022124	trub1	83	69.136	ENSMLUG00000017686	TRUB1	71	69.136	Myotis_lucifugus
ENSSFOG00015022124	trub1	83	69.959	ENSNGAG00000018682	Trub1	70	69.959	Nannospalax_galili
ENSSFOG00015022124	trub1	87	78.346	ENSNBRG00000023393	trub1	91	78.346	Neolamprologus_brichardi
ENSSFOG00015022124	trub1	83	70.370	ENSNLEG00000016345	TRUB1	70	70.370	Nomascus_leucogenys
ENSSFOG00015022124	trub1	69	72.139	ENSMEUG00000006603	TRUB1	79	69.811	Notamacropus_eugenii
ENSSFOG00015022124	trub1	88	67.315	ENSOPRG00000009371	TRUB1	74	67.315	Ochotona_princeps
ENSSFOG00015022124	trub1	83	68.724	ENSODEG00000010854	TRUB1	70	68.724	Octodon_degus
ENSSFOG00015022124	trub1	88	77.992	ENSONIG00000007249	trub1	94	77.992	Oreochromis_niloticus
ENSSFOG00015022124	trub1	87	68.846	ENSOANG00000001556	TRUB1	93	65.125	Ornithorhynchus_anatinus
ENSSFOG00015022124	trub1	83	69.959	ENSOCUG00000009456	TRUB1	70	69.959	Oryctolagus_cuniculus
ENSSFOG00015022124	trub1	90	74.621	ENSORLG00000029719	trub1	99	72.043	Oryzias_latipes
ENSSFOG00015022124	trub1	90	74.621	ENSORLG00020016767	trub1	98	72.043	Oryzias_latipes_hni
ENSSFOG00015022124	trub1	90	73.864	ENSORLG00015014728	trub1	99	71.326	Oryzias_latipes_hsok
ENSSFOG00015022124	trub1	95	70.251	ENSOMEG00000014556	trub1	98	70.251	Oryzias_melastigma
ENSSFOG00015022124	trub1	83	69.959	ENSOGAG00000015895	TRUB1	69	69.959	Otolemur_garnettii
ENSSFOG00015022124	trub1	83	68.800	ENSOARG00000015591	TRUB1	77	65.556	Ovis_aries
ENSSFOG00015022124	trub1	83	70.370	ENSPPAG00000043645	TRUB1	70	70.370	Pan_paniscus
ENSSFOG00015022124	trub1	87	68.504	ENSPPRG00000007096	TRUB1	70	70.782	Panthera_pardus
ENSSFOG00015022124	trub1	87	68.504	ENSPTIG00000006378	TRUB1	73	68.504	Panthera_tigris_altaica
ENSSFOG00015022124	trub1	83	70.370	ENSPTRG00000002964	TRUB1	70	70.370	Pan_troglodytes
ENSSFOG00015022124	trub1	83	69.959	ENSPANG00000020712	TRUB1	69	69.959	Papio_anubis
ENSSFOG00015022124	trub1	66	74.874	ENSPKIG00000003852	trub1	86	74.874	Paramormyrops_kingsleyae
ENSSFOG00015022124	trub1	83	74.486	ENSPSIG00000012877	TRUB1	83	74.486	Pelodiscus_sinensis
ENSSFOG00015022124	trub1	85	75.806	ENSPMGG00000000075	trub1	89	75.806	Periophthalmus_magnuspinnatus
ENSSFOG00015022124	trub1	83	69.547	ENSPEMG00000011156	Trub1	71	69.547	Peromyscus_maniculatus_bairdii
ENSSFOG00015022124	trub1	83	72.727	ENSPCIG00000009729	TRUB1	69	70.356	Phascolarctos_cinereus
ENSSFOG00015022124	trub1	89	76.154	ENSPFOG00000009950	trub1	95	76.154	Poecilia_formosa
ENSSFOG00015022124	trub1	90	75.758	ENSPLAG00000013855	trub1	92	75.758	Poecilia_latipinna
ENSSFOG00015022124	trub1	90	75.758	ENSPMEG00000009064	trub1	95	75.758	Poecilia_mexicana
ENSSFOG00015022124	trub1	90	76.515	ENSPREG00000003343	trub1	95	76.515	Poecilia_reticulata
ENSSFOG00015022124	trub1	83	69.959	ENSPPYG00000002676	TRUB1	70	69.959	Pongo_abelii
ENSSFOG00015022124	trub1	83	62.140	ENSPCAG00000008427	TRUB1	69	62.140	Procavia_capensis
ENSSFOG00015022124	trub1	83	64.198	ENSPCOG00000024360	TRUB1	68	63.374	Propithecus_coquereli
ENSSFOG00015022124	trub1	69	69.307	ENSPVAG00000007575	TRUB1	77	69.307	Pteropus_vampyrus
ENSSFOG00015022124	trub1	88	77.992	ENSPNYG00000018614	trub1	93	77.992	Pundamilia_nyererei
ENSSFOG00015022124	trub1	93	62.409	ENSPNAG00000006881	trub1	89	61.679	Pygocentrus_nattereri
ENSSFOG00015022124	trub1	83	67.490	ENSRNOG00000017321	Trub1	79	63.197	Rattus_norvegicus
ENSSFOG00015022124	trub1	83	60.816	ENSRBIG00000033423	TRUB1	67	60.816	Rhinopithecus_bieti
ENSSFOG00015022124	trub1	83	69.959	ENSRROG00000033902	TRUB1	69	69.959	Rhinopithecus_roxellana
ENSSFOG00015022124	trub1	60	35.122	YNL292W	-	51	35.122	Saccharomyces_cerevisiae
ENSSFOG00015022124	trub1	83	69.959	ENSSBOG00000024237	TRUB1	69	69.959	Saimiri_boliviensis_boliviensis
ENSSFOG00015022124	trub1	72	72.770	ENSSHAG00000009346	TRUB1	71	72.770	Sarcophilus_harrisii
ENSSFOG00015022124	trub1	92	75.836	ENSSMAG00000001020	trub1	96	74.275	Scophthalmus_maximus
ENSSFOG00015022124	trub1	88	77.606	ENSSDUG00000016414	trub1	93	77.606	Seriola_dumerili
ENSSFOG00015022124	trub1	89	77.692	ENSSLDG00000015486	trub1	94	77.692	Seriola_lalandi_dorsalis
ENSSFOG00015022124	trub1	90	68.266	ENSSPUG00000001642	TRUB1	93	68.266	Sphenodon_punctatus
ENSSFOG00015022124	trub1	93	73.993	ENSSPAG00000001217	trub1	98	73.993	Stegastes_partitus
ENSSFOG00015022124	trub1	83	70.248	ENSSSCG00000010653	TRUB1	71	70.248	Sus_scrofa
ENSSFOG00015022124	trub1	83	71.901	ENSTGUG00000010971	TRUB1	86	71.901	Taeniopygia_guttata
ENSSFOG00015022124	trub1	68	63.000	ENSTBEG00000002880	TRUB1	78	63.000	Tupaia_belangeri
ENSSFOG00015022124	trub1	69	68.812	ENSTTRG00000005767	TRUB1	77	68.812	Tursiops_truncatus
ENSSFOG00015022124	trub1	83	70.370	ENSUAMG00000024876	TRUB1	69	70.370	Ursus_americanus
ENSSFOG00015022124	trub1	83	70.370	ENSUMAG00000002411	TRUB1	77	68.217	Ursus_maritimus
ENSSFOG00015022124	trub1	83	70.370	ENSVPAG00000005507	TRUB1	70	70.370	Vicugna_pacos
ENSSFOG00015022124	trub1	83	70.370	ENSVVUG00000010085	TRUB1	59	70.370	Vulpes_vulpes
ENSSFOG00015022124	trub1	86	69.412	ENSXETG00000023828	trub1	92	69.412	Xenopus_tropicalis
ENSSFOG00015022124	trub1	82	77.593	ENSXCOG00000017847	trub1	87	76.423	Xiphophorus_couchianus
ENSSFOG00015022124	trub1	90	75.000	ENSXMAG00000014701	trub1	95	75.000	Xiphophorus_maculatus