EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015022253 (Gene tree)
Gene ID: 108935815
Gene Symbol: -
Alias: HsT2456|SNRPD|Sm-D1
Full Name: small nuclear ribonucleoprotein Sm D1
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 4064 bases
Position: chrKV411107.1:1107169-1111232
Accession: 108935815
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015034952	LSM	PF01423.22	5.9e-19	1	1
ENSSFOP00015034945	LSM	PF01423.22	8.2e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015035334	-	3010	XM_018754695	ENSSFOP00015034952	119 (aa)	XP_018610211	A0A0P7UTU5
ENSSFOT00015035327	-	3425	-	ENSSFOP00015034945	138 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015022253's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015022253's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015022253	-	66	31.325	ENSSFOG00015007002	snrpd3l	65	31.325
ENSSFOG00015022253	-	100	100.000	ENSSFOG00015008809	-	100	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015022253	-	94	95.536	ENSG00000167088	SNRPD1	94	95.536	Homo_sapiens
ENSSFOG00015022253	-	100	99.160	ENSAPOG00000019446	snrpd1	65	99.160	Acanthochromis_polyacanthus
ENSSFOG00015022253	-	92	93.636	ENSAMEG00000002576	SNRPD1	94	93.636	Ailuropoda_melanoleuca
ENSSFOG00015022253	-	94	99.107	ENSACIG00000011263	snrpd1	100	99.107	Amphilophus_citrinellus
ENSSFOG00015022253	-	100	99.160	ENSAOCG00000007406	snrpd1	100	99.160	Amphiprion_ocellaris
ENSSFOG00015022253	-	100	94.958	ENSAPEG00000014961	snrpd1	100	94.958	Amphiprion_percula
ENSSFOG00015022253	-	94	99.107	ENSAPEG00000012539	SNRPD1	100	99.107	Amphiprion_percula
ENSSFOG00015022253	-	100	99.160	ENSATEG00000014399	snrpd1	100	99.160	Anabas_testudineus
ENSSFOG00015022253	-	91	95.370	ENSAPLG00000012256	SNRPD1	91	95.370	Anas_platyrhynchos
ENSSFOG00015022253	-	94	95.536	ENSACAG00000006364	SNRPD1	94	95.536	Anolis_carolinensis
ENSSFOG00015022253	-	94	95.536	ENSANAG00000025641	SNRPD1	94	95.536	Aotus_nancymaae
ENSSFOG00015022253	-	94	99.107	ENSACLG00000017406	snrpd1	100	99.107	Astatotilapia_calliptera
ENSSFOG00015022253	-	100	98.319	ENSAMXG00000004589	snrpd1	100	98.319	Astyanax_mexicanus
ENSSFOG00015022253	-	79	89.362	ENSBTAG00000055316	-	81	89.362	Bos_taurus
ENSSFOG00015022253	-	81	92.708	ENSBTAG00000012376	-	72	92.708	Bos_taurus
ENSSFOG00015022253	-	94	95.536	ENSBTAG00000008292	SNRPD1	94	95.536	Bos_taurus
ENSSFOG00015022253	-	94	91.964	ENSBTAG00000047266	-	94	91.964	Bos_taurus
ENSSFOG00015022253	-	74	77.273	WBGene00004916	snr-3	76	72.917	Caenorhabditis_elegans
ENSSFOG00015022253	-	94	95.536	ENSCJAG00000042955	SNRPD1	94	95.536	Callithrix_jacchus
ENSSFOG00015022253	-	94	95.536	ENSCAFG00000018247	SNRPD1	94	95.536	Canis_familiaris
ENSSFOG00015022253	-	80	94.737	ENSCAFG00020015914	SNRPD1	88	82.301	Canis_lupus_dingo
ENSSFOG00015022253	-	94	92.857	ENSCHIG00000005557	SNRPD1	92	94.545	Capra_hircus
ENSSFOG00015022253	-	94	95.536	ENSTSYG00000030028	SNRPD1	94	95.536	Carlito_syrichta
ENSSFOG00015022253	-	91	94.444	ENSCAPG00000008103	SNRPD1	93	94.444	Cavia_aperea
ENSSFOG00015022253	-	94	95.536	ENSCPOG00000004679	SNRPD1	94	95.536	Cavia_porcellus
ENSSFOG00015022253	-	94	94.643	ENSCCAG00000020611	-	94	94.643	Cebus_capucinus
ENSSFOG00015022253	-	94	92.857	ENSCCAG00000016652	-	94	92.857	Cebus_capucinus
ENSSFOG00015022253	-	94	95.536	ENSCCAG00000032658	SNRPD1	94	95.536	Cebus_capucinus
ENSSFOG00015022253	-	81	90.625	ENSCCAG00000005390	-	81	90.625	Cebus_capucinus
ENSSFOG00015022253	-	94	95.536	ENSCATG00000039978	SNRPD1	94	95.536	Cercocebus_atys
ENSSFOG00015022253	-	94	95.536	ENSCLAG00000008691	SNRPD1	94	95.536	Chinchilla_lanigera
ENSSFOG00015022253	-	94	95.536	ENSCSAG00000017654	SNRPD1	94	95.536	Chlorocebus_sabaeus
ENSSFOG00015022253	-	94	95.536	ENSCPBG00000023143	SNRPD1	94	95.536	Chrysemys_picta_bellii
ENSSFOG00015022253	-	72	86.047	ENSCING00000024100	-	69	86.047	Ciona_intestinalis
ENSSFOG00015022253	-	73	85.057	ENSCSAVG00000004578	-	70	85.057	Ciona_savignyi
ENSSFOG00015022253	-	81	70.833	ENSCGRG00001009945	-	87	69.388	Cricetulus_griseus_chok1gshd
ENSSFOG00015022253	-	94	95.536	ENSCGRG00001021055	-	94	95.536	Cricetulus_griseus_chok1gshd
ENSSFOG00015022253	-	94	95.536	ENSCGRG00000000490	-	94	95.536	Cricetulus_griseus_crigri
ENSSFOG00015022253	-	81	70.833	ENSCGRG00000006224	-	87	69.388	Cricetulus_griseus_crigri
ENSSFOG00015022253	-	100	97.479	ENSCSEG00000018141	snrpd1	100	97.479	Cynoglossus_semilaevis
ENSSFOG00015022253	-	100	99.160	ENSCVAG00000000534	snrpd1	100	99.160	Cyprinodon_variegatus
ENSSFOG00015022253	-	100	98.319	ENSDARG00000011648	snrpd1	100	98.319	Danio_rerio
ENSSFOG00015022253	-	94	95.536	ENSDNOG00000040310	SNRPD1	94	95.536	Dasypus_novemcinctus
ENSSFOG00015022253	-	94	95.536	ENSDORG00000008349	Snrpd1	94	95.536	Dipodomys_ordii
ENSSFOG00015022253	-	79	79.787	FBgn0261933	SmD1	77	79.167	Drosophila_melanogaster
ENSSFOG00015022253	-	68	93.827	ENSETEG00000011689	SNRPD1	68	93.827	Echinops_telfairi
ENSSFOG00015022253	-	94	91.964	ENSEBUG00000003170	snrpd1	94	91.964	Eptatretus_burgeri
ENSSFOG00015022253	-	88	95.238	ENSEASG00005002433	SNRPD1	94	95.238	Equus_asinus_asinus
ENSSFOG00015022253	-	88	95.238	ENSECAG00000014373	SNRPD1	94	95.238	Equus_caballus
ENSSFOG00015022253	-	75	94.382	ENSEEUG00000004987	SNRPD1	100	94.382	Erinaceus_europaeus
ENSSFOG00015022253	-	93	86.486	ENSELUG00000000088	snrpd1	79	96.809	Esox_lucius
ENSSFOG00015022253	-	94	95.536	ENSFCAG00000012352	SNRPD1	94	95.536	Felis_catus
ENSSFOG00015022253	-	88	95.238	ENSFALG00000002646	SNRPD1	94	95.238	Ficedula_albicollis
ENSSFOG00015022253	-	100	98.319	ENSGMOG00000015607	snrpd1	100	98.319	Gadus_morhua
ENSSFOG00015022253	-	94	95.536	ENSGALG00000041334	SNRPD1	94	95.536	Gallus_gallus
ENSSFOG00015022253	-	100	99.160	ENSGAFG00000011171	snrpd1	100	99.160	Gambusia_affinis
ENSSFOG00015022253	-	100	98.319	ENSGACG00000005201	SNRPD1	100	98.319	Gasterosteus_aculeatus
ENSSFOG00015022253	-	94	95.536	ENSGAGG00000011197	SNRPD1	94	95.536	Gopherus_agassizii
ENSSFOG00015022253	-	94	95.536	ENSGGOG00000041053	SNRPD1	94	95.536	Gorilla_gorilla
ENSSFOG00015022253	-	81	89.583	ENSGGOG00000026706	-	80	89.583	Gorilla_gorilla
ENSSFOG00015022253	-	100	99.160	ENSHBUG00000003236	snrpd1	100	99.160	Haplochromis_burtoni
ENSSFOG00015022253	-	94	95.536	ENSHGLG00000007152	SNRPD1	94	95.536	Heterocephalus_glaber_female
ENSSFOG00015022253	-	94	95.536	ENSHGLG00100008618	SNRPD1	94	95.536	Heterocephalus_glaber_male
ENSSFOG00015022253	-	100	99.160	ENSIPUG00000003576	snrpd1	100	99.160	Ictalurus_punctatus
ENSSFOG00015022253	-	94	95.536	ENSSTOG00000000485	SNRPD1	94	95.536	Ictidomys_tridecemlineatus
ENSSFOG00015022253	-	94	95.536	ENSJJAG00000017698	Snrpd1	94	95.536	Jaculus_jaculus
ENSSFOG00015022253	-	100	99.160	ENSKMAG00000005987	snrpd1	100	99.160	Kryptolebias_marmoratus
ENSSFOG00015022253	-	100	99.160	ENSLBEG00000003327	snrpd1	100	99.160	Labrus_bergylta
ENSSFOG00015022253	-	94	95.536	ENSLACG00000001955	SNRPD1	94	95.536	Latimeria_chalumnae
ENSSFOG00015022253	-	92	94.545	ENSLOCG00000002003	snrpd1	94	94.545	Lepisosteus_oculatus
ENSSFOG00015022253	-	93	93.694	ENSLAFG00000005819	SNRPD1	94	93.694	Loxodonta_africana
ENSSFOG00015022253	-	94	95.536	ENSMFAG00000042080	SNRPD1	94	95.536	Macaca_fascicularis
ENSSFOG00015022253	-	90	95.327	ENSMMUG00000003992	SNRPD1	91	95.327	Macaca_mulatta
ENSSFOG00015022253	-	94	95.536	ENSMNEG00000041296	SNRPD1	94	95.536	Macaca_nemestrina
ENSSFOG00015022253	-	94	95.536	ENSMLEG00000028659	SNRPD1	94	95.536	Mandrillus_leucophaeus
ENSSFOG00015022253	-	100	99.160	ENSMAMG00000012971	snrpd1	100	99.160	Mastacembelus_armatus
ENSSFOG00015022253	-	100	99.160	ENSMZEG00005004685	snrpd1	100	99.160	Maylandia_zebra
ENSSFOG00015022253	-	91	95.370	ENSMGAG00000011598	SNRPD1	89	95.370	Meleagris_gallopavo
ENSSFOG00015022253	-	81	78.125	ENSMAUG00000016467	-	86	78.125	Mesocricetus_auratus
ENSSFOG00015022253	-	82	89.691	ENSMAUG00000006829	-	60	94.565	Mesocricetus_auratus
ENSSFOG00015022253	-	81	78.125	ENSMAUG00000016502	-	86	78.125	Mesocricetus_auratus
ENSSFOG00015022253	-	94	95.536	ENSMICG00000044066	SNRPD1	94	95.536	Microcebus_murinus
ENSSFOG00015022253	-	94	95.536	ENSMOCG00000017367	Snrpd1	94	95.536	Microtus_ochrogaster
ENSSFOG00015022253	-	100	99.160	ENSMMOG00000019089	snrpd1	100	99.160	Mola_mola
ENSSFOG00015022253	-	94	95.536	ENSMODG00000021487	SNRPD1	94	95.536	Monodelphis_domestica
ENSSFOG00015022253	-	100	99.160	ENSMALG00000014459	snrpd1	100	99.160	Monopterus_albus
ENSSFOG00015022253	-	94	95.536	MGP_CAROLIEiJ_G0021994	Snrpd1	94	95.536	Mus_caroli
ENSSFOG00015022253	-	94	95.536	ENSMUSG00000002477	Snrpd1	94	95.536	Mus_musculus
ENSSFOG00015022253	-	94	95.536	MGP_PahariEiJ_G0018731	Snrpd1	94	95.536	Mus_pahari
ENSSFOG00015022253	-	94	95.536	MGP_SPRETEiJ_G0022910	Snrpd1	94	95.536	Mus_spretus
ENSSFOG00015022253	-	92	93.636	ENSMPUG00000005567	-	94	93.636	Mustela_putorius_furo
ENSSFOG00015022253	-	94	94.643	ENSMPUG00000020041	-	94	94.643	Mustela_putorius_furo
ENSSFOG00015022253	-	79	93.617	ENSMLUG00000009124	SNRPD1	73	93.617	Myotis_lucifugus
ENSSFOG00015022253	-	94	95.536	ENSNGAG00000023946	Snrpd1	94	95.536	Nannospalax_galili
ENSSFOG00015022253	-	79	98.936	ENSNBRG00000012119	snrpd1	92	90.179	Neolamprologus_brichardi
ENSSFOG00015022253	-	94	92.857	ENSNLEG00000031430	SNRPD1	94	92.857	Nomascus_leucogenys
ENSSFOG00015022253	-	94	95.536	ENSODEG00000005764	SNRPD1	94	95.536	Octodon_degus
ENSSFOG00015022253	-	100	99.160	ENSONIG00000002486	snrpd1	100	99.160	Oreochromis_niloticus
ENSSFOG00015022253	-	82	85.714	ENSOANG00000004638	-	82	85.714	Ornithorhynchus_anatinus
ENSSFOG00015022253	-	92	93.636	ENSOCUG00000023761	-	94	93.636	Oryctolagus_cuniculus
ENSSFOG00015022253	-	94	94.643	ENSOCUG00000014399	-	94	94.643	Oryctolagus_cuniculus
ENSSFOG00015022253	-	94	99.107	ENSORLG00000012516	snrpd1	100	99.107	Oryzias_latipes
ENSSFOG00015022253	-	100	99.160	ENSORLG00020005743	snrpd1	100	99.160	Oryzias_latipes_hni
ENSSFOG00015022253	-	100	99.160	ENSORLG00015013402	snrpd1	100	99.160	Oryzias_latipes_hsok
ENSSFOG00015022253	-	100	99.160	ENSOMEG00000011571	snrpd1	100	99.160	Oryzias_melastigma
ENSSFOG00015022253	-	94	91.964	ENSOGAG00000007833	SNRPD1	92	93.636	Otolemur_garnettii
ENSSFOG00015022253	-	81	94.792	ENSOARG00000003413	-	72	94.792	Ovis_aries
ENSSFOG00015022253	-	94	95.536	ENSPPAG00000042593	SNRPD1	94	95.536	Pan_paniscus
ENSSFOG00015022253	-	94	95.536	ENSPPRG00000002399	SNRPD1	94	95.536	Panthera_pardus
ENSSFOG00015022253	-	94	69.643	ENSPPRG00000005009	-	92	69.643	Panthera_pardus
ENSSFOG00015022253	-	90	95.327	ENSPTIG00000013206	SNRPD1	94	95.327	Panthera_tigris_altaica
ENSSFOG00015022253	-	94	95.536	ENSPTRG00000009909	SNRPD1	94	95.536	Pan_troglodytes
ENSSFOG00015022253	-	86	89.216	ENSPTRG00000050159	-	87	89.216	Pan_troglodytes
ENSSFOG00015022253	-	94	95.536	ENSPANG00000023478	SNRPD1	94	95.536	Papio_anubis
ENSSFOG00015022253	-	100	97.479	ENSPKIG00000003985	SNRPD1	100	97.479	Paramormyrops_kingsleyae
ENSSFOG00015022253	-	94	98.214	ENSPKIG00000021610	snrpd1	100	98.214	Paramormyrops_kingsleyae
ENSSFOG00015022253	-	100	99.160	ENSPMGG00000001862	snrpd1	100	99.160	Periophthalmus_magnuspinnatus
ENSSFOG00015022253	-	94	95.536	ENSPEMG00000014773	-	94	95.536	Peromyscus_maniculatus_bairdii
ENSSFOG00015022253	-	86	83.654	ENSPMAG00000003938	-	85	83.654	Petromyzon_marinus
ENSSFOG00015022253	-	94	95.536	ENSPCIG00000020320	SNRPD1	94	95.536	Phascolarctos_cinereus
ENSSFOG00015022253	-	100	94.118	ENSPFOG00000012448	SNRPD1	100	94.118	Poecilia_formosa
ENSSFOG00015022253	-	100	94.118	ENSPLAG00000006738	snrpd1	100	94.118	Poecilia_latipinna
ENSSFOG00015022253	-	100	94.118	ENSPMEG00000021942	snrpd1	100	94.118	Poecilia_mexicana
ENSSFOG00015022253	-	100	99.160	ENSPREG00000007094	snrpd1	100	99.160	Poecilia_reticulata
ENSSFOG00015022253	-	94	95.536	ENSPPYG00000025874	SNRPD1	94	95.536	Pongo_abelii
ENSSFOG00015022253	-	94	95.536	ENSPCOG00000013327	SNRPD1	94	95.536	Propithecus_coquereli
ENSSFOG00015022253	-	94	95.536	ENSPVAG00000005511	SNRPD1	75	95.536	Pteropus_vampyrus
ENSSFOG00015022253	-	79	98.936	ENSPNYG00000010941	snrpd1	52	93.396	Pundamilia_nyererei
ENSSFOG00015022253	-	100	97.479	ENSPNAG00000017824	snrpd1	100	97.479	Pygocentrus_nattereri
ENSSFOG00015022253	-	94	95.536	ENSRNOG00000013714	Snrpd1	94	95.536	Rattus_norvegicus
ENSSFOG00015022253	-	94	95.536	ENSRBIG00000022996	SNRPD1	94	95.536	Rhinopithecus_bieti
ENSSFOG00015022253	-	94	95.536	ENSRROG00000027640	SNRPD1	94	95.536	Rhinopithecus_roxellana
ENSSFOG00015022253	-	94	95.536	ENSSBOG00000020998	SNRPD1	94	95.536	Saimiri_boliviensis_boliviensis
ENSSFOG00015022253	-	94	95.536	ENSSHAG00000011791	SNRPD1	94	95.536	Sarcophilus_harrisii
ENSSFOG00015022253	-	100	98.319	ENSSMAG00000008765	snrpd1	100	98.319	Scophthalmus_maximus
ENSSFOG00015022253	-	97	97.414	ENSSDUG00000010521	snrpd1	98	97.414	Seriola_dumerili
ENSSFOG00015022253	-	100	99.160	ENSSLDG00000011858	snrpd1	100	99.160	Seriola_lalandi_dorsalis
ENSSFOG00015022253	-	56	95.522	ENSSARG00000004271	SNRPD1	100	95.522	Sorex_araneus
ENSSFOG00015022253	-	94	95.536	ENSSPUG00000002824	SNRPD1	94	95.536	Sphenodon_punctatus
ENSSFOG00015022253	-	94	99.107	ENSSPAG00000015229	snrpd1	100	99.107	Stegastes_partitus
ENSSFOG00015022253	-	94	95.536	ENSSSCG00000003701	SNRPD1	94	95.536	Sus_scrofa
ENSSFOG00015022253	-	91	95.370	ENSTGUG00000005095	SNRPD1	91	95.370	Taeniopygia_guttata
ENSSFOG00015022253	-	94	97.321	ENSTRUG00000008977	snrpd1	100	97.321	Takifugu_rubripes
ENSSFOG00015022253	-	81	94.792	ENSTNIG00000001224	snrpd1	92	94.792	Tetraodon_nigroviridis
ENSSFOG00015022253	-	68	93.827	ENSTBEG00000013776	SNRPD1	92	93.827	Tupaia_belangeri
ENSSFOG00015022253	-	91	95.370	ENSTTRG00000002654	SNRPD1	94	95.370	Tursiops_truncatus
ENSSFOG00015022253	-	90	95.327	ENSUAMG00000013431	SNRPD1	97	93.814	Ursus_americanus
ENSSFOG00015022253	-	94	95.536	ENSUMAG00000019740	SNRPD1	94	95.536	Ursus_maritimus
ENSSFOG00015022253	-	94	95.536	ENSVPAG00000010056	SNRPD1	75	95.536	Vicugna_pacos
ENSSFOG00015022253	-	88	95.238	ENSVVUG00000004009	SNRPD1	94	95.238	Vulpes_vulpes
ENSSFOG00015022253	-	94	93.750	ENSXETG00000027354	snrpd1	94	93.750	Xenopus_tropicalis
ENSSFOG00015022253	-	100	99.160	ENSXCOG00000020108	snrpd1	100	99.160	Xiphophorus_couchianus
ENSSFOG00015022253	-	100	99.160	ENSXMAG00000003368	snrpd1	100	99.160	Xiphophorus_maculatus