EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015022313 (Gene tree)
Gene ID: 108940453
Gene Symbol: bms1
Alias: bms1l|im:7152071|wu:fb37d08
Full Name: BMS1%2C ribosome biogenesis factor
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 10466 bases
Position: chrKV411209.1:1369483-1379948
Accession: 108940453
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015035061	AARP2CN	PF08142.12	9.2e-31	1	1
ENSSFOP00015035093	AARP2CN	PF08142.12	9.9e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015035477	-	3732	-	ENSSFOP00015035093	1243 (aa)	-	-
ENSSFOT00015035445	-	5372	XM_018762654	ENSSFOP00015035061	1279 (aa)	XP_018618170	A0A1W5AY33

Gene Model

Click here to download ENSSFOG00015022313's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015022313's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015022313	bms1	99	60.890	ENSG00000165733	BMS1	99	62.008	Homo_sapiens
ENSSFOG00015022313	bms1	72	79.491	ENSAPOG00000002296	bms1	100	69.119	Acanthochromis_polyacanthus
ENSSFOG00015022313	bms1	50	69.134	ENSAMEG00000016834	BMS1	99	62.185	Ailuropoda_melanoleuca
ENSSFOG00015022313	bms1	91	88.140	ENSACIG00000002588	bms1	96	76.715	Amphilophus_citrinellus
ENSSFOG00015022313	bms1	93	79.266	ENSATEG00000023465	bms1	99	73.323	Anabas_testudineus
ENSSFOG00015022313	bms1	99	69.702	ENSACLG00000001294	bms1	98	75.969	Astatotilapia_calliptera
ENSSFOG00015022313	bms1	99	62.348	ENSBTAG00000012878	BMS1	99	63.089	Bos_taurus
ENSSFOG00015022313	bms1	81	53.367	WBGene00022021	Y61A9LA.10	96	53.102	Caenorhabditis_elegans
ENSSFOG00015022313	bms1	99	60.752	ENSCJAG00000021705	BMS1	99	61.166	Callithrix_jacchus
ENSSFOG00015022313	bms1	99	62.347	ENSCHIG00000023251	BMS1	99	62.780	Capra_hircus
ENSSFOG00015022313	bms1	99	58.806	ENSCAPG00000008652	BMS1	99	58.546	Cavia_aperea
ENSSFOG00015022313	bms1	99	61.503	ENSCPOG00000000502	BMS1	99	61.562	Cavia_porcellus
ENSSFOG00015022313	bms1	89	45.823	ENSCATG00000008695	-	83	57.759	Cercocebus_atys
ENSSFOG00015022313	bms1	99	60.583	ENSCATG00000030625	-	99	60.863	Cercocebus_atys
ENSSFOG00015022313	bms1	99	60.429	ENSCSAG00000011118	BMS1	99	61.835	Chlorocebus_sabaeus
ENSSFOG00015022313	bms1	99	60.413	ENSCHOG00000011055	BMS1	99	61.379	Choloepus_hoffmanni
ENSSFOG00015022313	bms1	99	62.651	ENSCPBG00000025581	BMS1	89	69.921	Chrysemys_picta_bellii
ENSSFOG00015022313	bms1	79	61.772	ENSCING00000003181	-	98	60.294	Ciona_intestinalis
ENSSFOG00015022313	bms1	53	70.445	ENSCSAVG00000004113	-	92	52.523	Ciona_savignyi
ENSSFOG00015022313	bms1	99	61.196	ENSCANG00000011609	BMS1	99	61.604	Colobus_angolensis_palliatus
ENSSFOG00015022313	bms1	99	61.747	ENSCGRG00001019461	Bms1	99	60.771	Cricetulus_griseus_chok1gshd
ENSSFOG00015022313	bms1	99	61.747	ENSCGRG00000009016	Bms1	100	60.833	Cricetulus_griseus_crigri
ENSSFOG00015022313	bms1	50	77.184	ENSCSEG00000002469	bms1	50	77.184	Cynoglossus_semilaevis
ENSSFOG00015022313	bms1	90	78.365	ENSCVAG00000008371	bms1	54	78.438	Cyprinodon_variegatus
ENSSFOG00015022313	bms1	50	76.698	ENSDARG00000054154	bms1	99	72.340	Danio_rerio
ENSSFOG00015022313	bms1	99	60.866	ENSDNOG00000015761	BMS1	99	62.106	Dasypus_novemcinctus
ENSSFOG00015022313	bms1	86	59.500	FBgn0036686	CG7728	92	59.169	Drosophila_melanogaster
ENSSFOG00015022313	bms1	85	65.179	ENSETEG00000009554	BMS1	53	65.179	Echinops_telfairi
ENSSFOG00015022313	bms1	99	62.307	ENSEASG00005006894	BMS1	99	62.558	Equus_asinus_asinus
ENSSFOG00015022313	bms1	99	62.539	ENSECAG00000001358	BMS1	99	62.558	Equus_caballus
ENSSFOG00015022313	bms1	99	71.092	ENSELUG00000001756	bms1	84	80.285	Esox_lucius
ENSSFOG00015022313	bms1	99	62.221	ENSFCAG00000011220	BMS1	99	62.654	Felis_catus
ENSSFOG00015022313	bms1	50	70.429	ENSFALG00000006882	BMS1	90	70.173	Ficedula_albicollis
ENSSFOG00015022313	bms1	91	79.227	ENSFHEG00000003367	bms1	55	76.923	Fundulus_heteroclitus
ENSSFOG00015022313	bms1	99	67.955	ENSGMOG00000000718	bms1	96	75.968	Gadus_morhua
ENSSFOG00015022313	bms1	93	77.724	ENSGACG00000015334	bms1	90	77.724	Gasterosteus_aculeatus
ENSSFOG00015022313	bms1	99	63.651	ENSGAGG00000003467	BMS1	99	63.174	Gopherus_agassizii
ENSSFOG00015022313	bms1	99	69.780	ENSHBUG00000022628	bms1	53	75.969	Haplochromis_burtoni
ENSSFOG00015022313	bms1	99	61.273	ENSHGLG00000000477	BMS1	50	66.719	Heterocephalus_glaber_female
ENSSFOG00015022313	bms1	99	61.196	ENSHGLG00100002176	BMS1	50	66.719	Heterocephalus_glaber_male
ENSSFOG00015022313	bms1	99	71.846	ENSHCOG00000017604	bms1	54	76.205	Hippocampus_comes
ENSSFOG00015022313	bms1	100	71.022	ENSIPUG00000017855	bms1	94	83.184	Ictalurus_punctatus
ENSSFOG00015022313	bms1	99	61.103	ENSSTOG00000015063	BMS1	99	61.120	Ictidomys_tridecemlineatus
ENSSFOG00015022313	bms1	99	61.086	ENSJJAG00000017328	Bms1	99	60.972	Jaculus_jaculus
ENSSFOG00015022313	bms1	58	71.107	ENSKMAG00000021982	bms1	94	69.395	Kryptolebias_marmoratus
ENSSFOG00015022313	bms1	93	75.791	ENSLBEG00000028208	bms1	55	75.228	Labrus_bergylta
ENSSFOG00015022313	bms1	99	57.328	ENSLACG00000001600	BMS1	50	61.455	Latimeria_chalumnae
ENSSFOG00015022313	bms1	85	84.944	ENSLOCG00000012914	bms1	99	72.713	Lepisosteus_oculatus
ENSSFOG00015022313	bms1	50	67.350	ENSLAFG00000006250	BMS1	90	66.878	Loxodonta_africana
ENSSFOG00015022313	bms1	90	67.358	ENSMFAG00000037771	BMS1	99	67.358	Macaca_fascicularis
ENSSFOG00015022313	bms1	90	51.839	ENSMMUG00000007426	-	99	51.500	Macaca_mulatta
ENSSFOG00015022313	bms1	79	56.909	ENSMLEG00000029084	-	84	53.864	Mandrillus_leucophaeus
ENSSFOG00015022313	bms1	99	70.616	ENSMAMG00000020855	bms1	53	76.899	Mastacembelus_armatus
ENSSFOG00015022313	bms1	99	69.623	ENSMZEG00005005663	bms1	98	75.969	Maylandia_zebra
ENSSFOG00015022313	bms1	95	62.171	ENSMGAG00000001170	BMS1	51	70.347	Meleagris_gallopavo
ENSSFOG00015022313	bms1	99	61.997	ENSMAUG00000002195	Bms1	99	61.035	Mesocricetus_auratus
ENSSFOG00015022313	bms1	99	60.987	ENSMOCG00000002038	Bms1	99	61.072	Microtus_ochrogaster
ENSSFOG00015022313	bms1	89	78.617	ENSMMOG00000000977	bms1	99	73.684	Mola_mola
ENSSFOG00015022313	bms1	99	62.980	ENSMODG00000001177	BMS1	91	69.749	Monodelphis_domestica
ENSSFOG00015022313	bms1	99	71.506	ENSMALG00000009680	bms1	52	78.788	Monopterus_albus
ENSSFOG00015022313	bms1	74	75.434	MGP_CAROLIEiJ_G0028785	-	78	74.515	Mus_caroli
ENSSFOG00015022313	bms1	99	60.398	ENSMUSG00000030138	Bms1	99	59.819	Mus_musculus
ENSSFOG00015022313	bms1	59	57.475	MGP_PahariEiJ_G0022539	Bms1	92	64.107	Mus_pahari
ENSSFOG00015022313	bms1	99	60.245	MGP_SPRETEiJ_G0029816	Bms1	99	59.819	Mus_spretus
ENSSFOG00015022313	bms1	99	61.704	ENSMLUG00000003260	BMS1	99	62.032	Myotis_lucifugus
ENSSFOG00015022313	bms1	99	55.997	ENSNGAG00000015258	Bms1	99	56.982	Nannospalax_galili
ENSSFOG00015022313	bms1	99	59.586	ENSNLEG00000015791	BMS1	99	60.369	Nomascus_leucogenys
ENSSFOG00015022313	bms1	83	74.880	ENSOPRG00000005195	BMS1	80	74.880	Ochotona_princeps
ENSSFOG00015022313	bms1	99	61.204	ENSODEG00000005554	BMS1	99	60.120	Octodon_degus
ENSSFOG00015022313	bms1	99	69.414	ENSONIG00000007227	bms1	54	75.883	Oreochromis_niloticus
ENSSFOG00015022313	bms1	93	77.157	ENSOMEG00000015042	bms1	52	79.294	Oryzias_melastigma
ENSSFOG00015022313	bms1	99	62.156	ENSOARG00000003900	BMS1	99	62.664	Ovis_aries
ENSSFOG00015022313	bms1	99	58.008	ENSPPAG00000027837	BMS1	99	59.105	Pan_paniscus
ENSSFOG00015022313	bms1	99	62.317	ENSPPRG00000001311	BMS1	99	62.674	Panthera_pardus
ENSSFOG00015022313	bms1	99	60.910	ENSPTIG00000009652	BMS1	99	61.574	Panthera_tigris_altaica
ENSSFOG00015022313	bms1	99	60.890	ENSPTRG00000002441	BMS1	99	62.162	Pan_troglodytes
ENSSFOG00015022313	bms1	50	77.583	ENSPKIG00000008165	bms1	90	77.321	Paramormyrops_kingsleyae
ENSSFOG00015022313	bms1	99	61.843	ENSPSIG00000006481	BMS1	90	69.231	Pelodiscus_sinensis
ENSSFOG00015022313	bms1	99	56.359	ENSPEMG00000022467	Bms1	99	56.559	Peromyscus_maniculatus_bairdii
ENSSFOG00015022313	bms1	64	69.872	ENSPCIG00000001339	BMS1	89	75.284	Phascolarctos_cinereus
ENSSFOG00015022313	bms1	80	82.064	ENSPFOG00000015180	bms1	62	76.769	Poecilia_formosa
ENSSFOG00015022313	bms1	82	82.064	ENSPMEG00000023176	bms1	52	77.112	Poecilia_mexicana
ENSSFOG00015022313	bms1	81	81.481	ENSPREG00000002695	bms1	55	76.615	Poecilia_reticulata
ENSSFOG00015022313	bms1	60	54.489	ENSPPYG00000002836	-	99	55.849	Pongo_abelii
ENSSFOG00015022313	bms1	75	74.658	ENSPCAG00000014528	BMS1	77	65.356	Procavia_capensis
ENSSFOG00015022313	bms1	99	70.968	ENSPNYG00000018866	bms1	90	70.736	Pundamilia_nyererei
ENSSFOG00015022313	bms1	81	59.355	ENSRNOG00000006576	Bms1	100	60.243	Rattus_norvegicus
ENSSFOG00015022313	bms1	99	59.433	ENSRROG00000040101	BMS1	99	60.293	Rhinopithecus_roxellana
ENSSFOG00015022313	bms1	68	50.500	YPL217C	-	77	49.500	Saccharomyces_cerevisiae
ENSSFOG00015022313	bms1	99	61.441	ENSSHAG00000005062	BMS1	89	67.624	Sarcophilus_harrisii
ENSSFOG00015022313	bms1	60	65.385	ENSSARG00000014407	BMS1	100	50.642	Sorex_araneus
ENSSFOG00015022313	bms1	50	68.262	ENSSPUG00000014454	BMS1	90	69.231	Sphenodon_punctatus
ENSSFOG00015022313	bms1	99	61.868	ENSSSCG00000010198	BMS1	99	62.992	Sus_scrofa
ENSSFOG00015022313	bms1	50	70.973	ENSTGUG00000006302	-	88	70.973	Taeniopygia_guttata
ENSSFOG00015022313	bms1	89	72.903	ENSTRUG00000008028	bms1	97	71.429	Takifugu_rubripes
ENSSFOG00015022313	bms1	99	65.382	ENSTNIG00000006216	bms1	91	73.871	Tetraodon_nigroviridis
ENSSFOG00015022313	bms1	60	73.220	ENSTBEG00000001673	-	64	70.684	Tupaia_belangeri
ENSSFOG00015022313	bms1	99	61.395	ENSTTRG00000007983	BMS1	99	61.860	Tursiops_truncatus
ENSSFOG00015022313	bms1	99	61.831	ENSUAMG00000023996	BMS1	99	62.490	Ursus_americanus
ENSSFOG00015022313	bms1	99	61.676	ENSUMAG00000016523	BMS1	99	62.337	Ursus_maritimus
ENSSFOG00015022313	bms1	84	72.632	ENSVPAG00000007477	BMS1	92	75.283	Vicugna_pacos
ENSSFOG00015022313	bms1	50	69.255	ENSVVUG00000021305	BMS1	99	63.586	Vulpes_vulpes
ENSSFOG00015022313	bms1	93	68.849	ENSXETG00000008158	bms1	99	69.794	Xenopus_tropicalis
ENSSFOG00015022313	bms1	97	71.287	ENSXCOG00000000506	bms1	95	82.963	Xiphophorus_couchianus
ENSSFOG00015022313	bms1	88	79.032	ENSXMAG00000014236	bms1	55	77.077	Xiphophorus_maculatus