EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015022422 (Gene tree)
Gene ID: 108939159
Gene Symbol: snrpc
Alias: U1-C|Yhc1
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 7213 bases
Position: chrKV411187.1:7174814-7182026
Accession: 108939159
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015035193	zf-U1	PF06220.12	1.4e-22	1	1
ENSSFOP00015035204	zf-U1	PF06220.12	3.8e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015035577	-	2024	XM_018760296	ENSSFOP00015035193	156 (aa)	XP_018615812	A0A0P7WTE3
ENSSFOT00015035588	-	1195	-	ENSSFOP00015035204	211 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015022422's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015022422's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015022422	snrpc	60	85.106	ENSSFOG00015019150	snrpc	58	85.870

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015022422	snrpc	97	64.474	ENSANAG00000021444	-	58	68.478	Aotus_nancymaae
ENSSFOG00015022422	snrpc	99	74.839	ENSANAG00000019726	-	56	85.870	Aotus_nancymaae
ENSSFOG00015022422	snrpc	99	79.221	ENSANAG00000020588	-	53	79.121	Aotus_nancymaae
ENSSFOG00015022422	snrpc	99	84.516	ENSANAG00000007843	-	58	85.870	Aotus_nancymaae
ENSSFOG00015022422	snrpc	82	74.219	ENSANAG00000021026	-	59	69.565	Aotus_nancymaae
ENSSFOG00015022422	snrpc	99	83.333	ENSANAG00000019157	-	66	81.905	Aotus_nancymaae
ENSSFOG00015022422	snrpc	99	90.968	ENSAMXG00000032641	snrpc	51	95.652	Astyanax_mexicanus
ENSSFOG00015022422	snrpc	99	83.226	ENSCJAG00000043055	-	58	85.870	Callithrix_jacchus
ENSSFOG00015022422	snrpc	50	92.308	ENSCAFG00000001231	-	72	85.870	Canis_familiaris
ENSSFOG00015022422	snrpc	61	84.211	ENSCAFG00000031775	-	58	83.696	Canis_familiaris
ENSSFOG00015022422	snrpc	98	77.778	ENSCAFG00020009944	-	52	76.667	Canis_lupus_dingo
ENSSFOG00015022422	snrpc	61	84.211	ENSCAFG00020017383	-	58	83.696	Canis_lupus_dingo
ENSSFOG00015022422	snrpc	99	70.323	ENSTSYG00000025721	-	66	64.486	Carlito_syrichta
ENSSFOG00015022422	snrpc	82	84.375	ENSTSYG00000029745	-	53	82.857	Carlito_syrichta
ENSSFOG00015022422	snrpc	68	85.849	ENSCAPG00000005161	SNRPC	62	84.091	Cavia_aperea
ENSSFOG00015022422	snrpc	99	79.355	ENSCCAG00000036059	-	51	82.609	Cebus_capucinus
ENSSFOG00015022422	snrpc	77	61.667	ENSCCAG00000022209	-	59	55.882	Cebus_capucinus
ENSSFOG00015022422	snrpc	97	78.289	ENSCCAG00000022751	-	54	77.528	Cebus_capucinus
ENSSFOG00015022422	snrpc	100	59.873	ENSCCAG00000028293	-	71	76.087	Cebus_capucinus
ENSSFOG00015022422	snrpc	81	75.781	ENSCLAG00000010242	-	55	73.626	Chinchilla_lanigera
ENSSFOG00015022422	snrpc	79	73.171	ENSCHOG00000011439	SNRPC	63	59.292	Choloepus_hoffmanni
ENSSFOG00015022422	snrpc	68	85.849	ENSCANG00000028035	SNRPC	58	85.870	Colobus_angolensis_palliatus
ENSSFOG00015022422	snrpc	79	69.355	ENSCGRG00001021483	-	63	64.762	Cricetulus_griseus_chok1gshd
ENSSFOG00015022422	snrpc	100	89.744	ENSDARG00000009871	snrpc	58	93.478	Danio_rerio
ENSSFOG00015022422	snrpc	52	92.593	ENSDNOG00000042403	-	73	85.870	Dasypus_novemcinctus
ENSSFOG00015022422	snrpc	81	69.841	ENSDORG00000029823	-	64	82.759	Dipodomys_ordii
ENSSFOG00015022422	snrpc	50	91.026	ENSETEG00000008268	-	58	84.444	Echinops_telfairi
ENSSFOG00015022422	snrpc	99	80.769	ENSETEG00000011265	-	59	78.261	Echinops_telfairi
ENSSFOG00015022422	snrpc	52	87.654	ENSETEG00000008756	-	79	85.185	Echinops_telfairi
ENSSFOG00015022422	snrpc	78	71.311	ENSEEUG00000014633	SNRPC	61	56.364	Erinaceus_europaeus
ENSSFOG00015022422	snrpc	96	85.235	ENSELUG00000000815	SNRPC	59	95.652	Esox_lucius
ENSSFOG00015022422	snrpc	100	78.125	ENSELUG00000020489	snrpc	58	96.739	Esox_lucius
ENSSFOG00015022422	snrpc	79	87.097	ENSGALG00000002773	SNRPC	66	85.849	Gallus_gallus
ENSSFOG00015022422	snrpc	82	66.406	ENSHGLG00000005871	-	65	75.000	Heterocephalus_glaber_female
ENSSFOG00015022422	snrpc	99	76.623	ENSHGLG00000017741	-	63	73.786	Heterocephalus_glaber_female
ENSSFOG00015022422	snrpc	99	76.623	ENSHGLG00100010786	-	63	73.786	Heterocephalus_glaber_male
ENSSFOG00015022422	snrpc	99	82.581	ENSHGLG00100017764	-	58	84.783	Heterocephalus_glaber_male
ENSSFOG00015022422	snrpc	99	91.613	ENSIPUG00000024851	snrpc	58	93.478	Ictalurus_punctatus
ENSSFOG00015022422	snrpc	68	85.849	ENSMFAG00000031764	-	58	85.870	Macaca_fascicularis
ENSSFOG00015022422	snrpc	98	77.124	ENSMMUG00000045425	-	58	75.000	Macaca_mulatta
ENSSFOG00015022422	snrpc	82	86.719	ENSMMUG00000039415	-	61	84.783	Macaca_mulatta
ENSSFOG00015022422	snrpc	96	79.866	ENSMLEG00000040224	-	51	80.682	Mandrillus_leucophaeus
ENSSFOG00015022422	snrpc	77	80.992	ENSMGAG00000006054	SNRPC	65	84.466	Meleagris_gallopavo
ENSSFOG00015022422	snrpc	99	83.871	ENSMICG00000032183	-	58	85.870	Microcebus_murinus
ENSSFOG00015022422	snrpc	97	65.789	ENSMICG00000036552	-	52	79.775	Microcebus_murinus
ENSSFOG00015022422	snrpc	95	52.201	ENSMODG00000025263	-	67	77.419	Monodelphis_domestica
ENSSFOG00015022422	snrpc	50	93.590	ENSMODG00000013904	-	58	86.957	Monodelphis_domestica
ENSSFOG00015022422	snrpc	100	67.949	ENSMALG00000001197	snrpc	56	85.870	Monopterus_albus
ENSSFOG00015022422	snrpc	68	84.906	ENSMUSG00000024217	Snrpc	58	84.783	Mus_musculus
ENSSFOG00015022422	snrpc	68	85.849	ENSMEUG00000009300	SNRPC	62	84.091	Notamacropus_eugenii
ENSSFOG00015022422	snrpc	79	82.114	ENSODEG00000006008	-	66	80.435	Octodon_degus
ENSSFOG00015022422	snrpc	68	82.727	ENSOANG00000003405	SNRPC	62	80.435	Ornithorhynchus_anatinus
ENSSFOG00015022422	snrpc	50	92.308	ENSOCUG00000026430	-	57	84.783	Oryctolagus_cuniculus
ENSSFOG00015022422	snrpc	61	85.263	ENSOCUG00000023292	-	58	84.783	Oryctolagus_cuniculus
ENSSFOG00015022422	snrpc	66	54.808	ENSORLG00000007308	snrpc	56	85.870	Oryzias_latipes
ENSSFOG00015022422	snrpc	99	72.078	ENSOGAG00000028405	-	67	70.192	Otolemur_garnettii
ENSSFOG00015022422	snrpc	79	85.366	ENSOGAG00000026269	-	58	83.696	Otolemur_garnettii
ENSSFOG00015022422	snrpc	97	50.000	ENSPPRG00000016017	-	60	44.660	Panthera_pardus
ENSSFOG00015022422	snrpc	98	56.494	ENSPTIG00000013329	-	60	70.652	Panthera_tigris_altaica
ENSSFOG00015022422	snrpc	99	75.484	ENSPANG00000018228	-	54	73.913	Papio_anubis
ENSSFOG00015022422	snrpc	60	94.681	ENSPKIG00000003136	snrpc	59	94.565	Paramormyrops_kingsleyae
ENSSFOG00015022422	snrpc	99	88.387	ENSPKIG00000001671	SNRPC	58	91.304	Paramormyrops_kingsleyae
ENSSFOG00015022422	snrpc	96	65.605	ENSPMGG00000022162	snrpc	55	83.146	Periophthalmus_magnuspinnatus
ENSSFOG00015022422	snrpc	82	75.781	ENSPEMG00000002763	-	61	80.435	Peromyscus_maniculatus_bairdii
ENSSFOG00015022422	snrpc	99	66.452	ENSPMAG00000000602	snrpc	59	71.739	Petromyzon_marinus
ENSSFOG00015022422	snrpc	52	92.593	ENSPPYG00000029902	-	84	86.747	Pongo_abelii
ENSSFOG00015022422	snrpc	87	60.741	ENSPNYG00000004900	snrpc	56	68.889	Pundamilia_nyererei
ENSSFOG00015022422	snrpc	99	83.871	ENSPNAG00000012799	snrpc	58	95.652	Pygocentrus_nattereri
ENSSFOG00015022422	snrpc	98	76.471	ENSRBIG00000036353	-	65	60.000	Rhinopithecus_bieti
ENSSFOG00015022422	snrpc	97	71.053	ENSSBOG00000032882	-	60	76.667	Saimiri_boliviensis_boliviensis
ENSSFOG00015022422	snrpc	99	72.903	ENSSBOG00000023189	-	55	76.087	Saimiri_boliviensis_boliviensis
ENSSFOG00015022422	snrpc	97	71.711	ENSSBOG00000032361	-	69	69.000	Saimiri_boliviensis_boliviensis
ENSSFOG00015022422	snrpc	95	60.811	ENSSHAG00000002972	-	67	77.419	Sarcophilus_harrisii
ENSSFOG00015022422	snrpc	86	72.388	ENSTRUG00000021651	snrpc	56	85.870	Takifugu_rubripes
ENSSFOG00015022422	snrpc	86	80.882	ENSTNIG00000018307	snrpc	58	85.106	Tetraodon_nigroviridis
ENSSFOG00015022422	snrpc	61	78.947	ENSTBEG00000015356	-	65	78.261	Tupaia_belangeri
ENSSFOG00015022422	snrpc	99	78.710	ENSTBEG00000013022	-	59	80.435	Tupaia_belangeri
ENSSFOG00015022422	snrpc	50	92.308	ENSUAMG00000014125	SNRPC	62	85.870	Ursus_americanus
ENSSFOG00015022422	snrpc	96	79.333	ENSVVUG00000010467	-	61	69.565	Vulpes_vulpes