EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015023358 (Gene tree)
Gene ID: 108920734
Gene Symbol: prdm4
Alias: si:dkey-180p18.8
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 7306 bases
Position: chrKV411299.1:3628911-3636216
Accession: 108920734
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015036738	zf-C2H2	PF00096.26	5.1e-24	1	5
ENSSFOP00015036738	zf-C2H2	PF00096.26	5.1e-24	2	5
ENSSFOP00015036738	zf-C2H2	PF00096.26	5.1e-24	3	5
ENSSFOP00015036738	zf-C2H2	PF00096.26	5.1e-24	4	5
ENSSFOP00015036738	zf-C2H2	PF00096.26	5.1e-24	5	5
ENSSFOP00015036733	zf-C2H2	PF00096.26	7.5e-24	1	5
ENSSFOP00015036733	zf-C2H2	PF00096.26	7.5e-24	2	5
ENSSFOP00015036733	zf-C2H2	PF00096.26	7.5e-24	3	5
ENSSFOP00015036733	zf-C2H2	PF00096.26	7.5e-24	4	5
ENSSFOP00015036733	zf-C2H2	PF00096.26	7.5e-24	5	5
ENSSFOP00015036738	zf-met	PF12874.7	3.5e-05	1	1
ENSSFOP00015036733	zf-met	PF12874.7	0.00024	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015037135	-	2376	-	ENSSFOP00015036738	791 (aa)	-	-
ENSSFOT00015037129	-	2989	XM_018729737	ENSSFOP00015036733	818 (aa)	XP_018585253	A0A1W4Y9V9

Gene Model

Click here to download ENSSFOG00015023358's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015023358's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015023358	prdm4	52	31.875	ENSSFOG00015013930	PRDM15	73	32.335

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015023358	prdm4	99	63.793	ENSG00000110851	PRDM4	96	75.000	Homo_sapiens
ENSSFOG00015023358	prdm4	99	62.854	ENSAMEG00000016174	PRDM4	99	63.882	Ailuropoda_melanoleuca
ENSSFOG00015023358	prdm4	99	64.128	ENSAPLG00000009846	PRDM4	99	64.005	Anas_platyrhynchos
ENSSFOG00015023358	prdm4	99	63.625	ENSANAG00000024800	PRDM4	99	63.625	Aotus_nancymaae
ENSSFOG00015023358	prdm4	99	63.379	ENSBTAG00000012999	PRDM4	99	64.039	Bos_taurus
ENSSFOG00015023358	prdm4	99	69.427	ENSCJAG00000015261	PRDM4	99	63.372	Callithrix_jacchus
ENSSFOG00015023358	prdm4	99	63.255	ENSCAFG00000001788	PRDM4	99	63.793	Canis_familiaris
ENSSFOG00015023358	prdm4	99	63.255	ENSCAFG00020004916	PRDM4	99	63.793	Canis_lupus_dingo
ENSSFOG00015023358	prdm4	99	63.748	ENSCHIG00000019409	PRDM4	99	64.409	Capra_hircus
ENSSFOG00015023358	prdm4	99	63.916	ENSTSYG00000009248	PRDM4	99	63.916	Carlito_syrichta
ENSSFOG00015023358	prdm4	98	62.485	ENSCAPG00000013937	PRDM4	99	63.145	Cavia_aperea
ENSSFOG00015023358	prdm4	98	62.149	ENSCPOG00000022385	PRDM4	99	62.805	Cavia_porcellus
ENSSFOG00015023358	prdm4	99	63.670	ENSCCAG00000036033	PRDM4	99	63.670	Cebus_capucinus
ENSSFOG00015023358	prdm4	99	63.793	ENSCATG00000044797	PRDM4	99	63.793	Cercocebus_atys
ENSSFOG00015023358	prdm4	98	61.689	ENSCLAG00000007545	PRDM4	99	62.225	Chinchilla_lanigera
ENSSFOG00015023358	prdm4	99	63.670	ENSCSAG00000002896	PRDM4	99	63.670	Chlorocebus_sabaeus
ENSSFOG00015023358	prdm4	62	79.439	ENSCHOG00000001744	PRDM4	66	79.630	Choloepus_hoffmanni
ENSSFOG00015023358	prdm4	98	63.782	ENSCPBG00000023187	PRDM4	99	63.659	Chrysemys_picta_bellii
ENSSFOG00015023358	prdm4	99	63.793	ENSCANG00000021804	PRDM4	99	63.793	Colobus_angolensis_palliatus
ENSSFOG00015023358	prdm4	98	62.500	ENSCGRG00001015102	-	99	62.745	Cricetulus_griseus_chok1gshd
ENSSFOG00015023358	prdm4	96	62.262	ENSCGRG00000004044	-	99	62.516	Cricetulus_griseus_crigri
ENSSFOG00015023358	prdm4	99	63.715	ENSDNOG00000032478	PRDM4	99	63.675	Dasypus_novemcinctus
ENSSFOG00015023358	prdm4	98	53.695	ENSDORG00000015081	-	99	53.695	Dipodomys_ordii
ENSSFOG00015023358	prdm4	94	46.365	ENSEBUG00000003775	prdm4	99	47.188	Eptatretus_burgeri
ENSSFOG00015023358	prdm4	99	63.916	ENSECAG00000015423	PRDM4	99	63.916	Equus_caballus
ENSSFOG00015023358	prdm4	94	61.911	ENSEEUG00000006569	PRDM4	99	61.780	Erinaceus_europaeus
ENSSFOG00015023358	prdm4	99	74.532	ENSELUG00000015265	prdm4	99	74.782	Esox_lucius
ENSSFOG00015023358	prdm4	99	63.255	ENSFCAG00000022478	PRDM4	99	63.793	Felis_catus
ENSSFOG00015023358	prdm4	98	63.793	ENSFALG00000013342	PRDM4	99	63.793	Ficedula_albicollis
ENSSFOG00015023358	prdm4	99	62.776	ENSGALG00000012619	PRDM4	99	62.776	Gallus_gallus
ENSSFOG00015023358	prdm4	99	63.838	ENSGAGG00000002763	PRDM4	95	63.715	Gopherus_agassizii
ENSSFOG00015023358	prdm4	99	63.793	ENSGGOG00000001244	PRDM4	99	63.793	Gorilla_gorilla
ENSSFOG00015023358	prdm4	99	62.899	ENSHGLG00000004590	PRDM4	98	62.776	Heterocephalus_glaber_female
ENSSFOG00015023358	prdm4	98	62.836	ENSHGLG00100007464	PRDM4	99	62.714	Heterocephalus_glaber_male
ENSSFOG00015023358	prdm4	99	69.390	ENSIPUG00000024162	prdm4	100	69.048	Ictalurus_punctatus
ENSSFOG00015023358	prdm4	99	63.547	ENSSTOG00000016168	PRDM4	99	63.300	Ictidomys_tridecemlineatus
ENSSFOG00015023358	prdm4	78	67.424	ENSJJAG00000022448	-	94	64.727	Jaculus_jaculus
ENSSFOG00015023358	prdm4	94	67.797	ENSLACG00000007452	PRDM4	94	67.666	Latimeria_chalumnae
ENSSFOG00015023358	prdm4	77	84.706	ENSLOCG00000017092	prdm4	100	54.310	Lepisosteus_oculatus
ENSSFOG00015023358	prdm4	97	63.806	ENSLAFG00000001483	PRDM4	99	63.806	Loxodonta_africana
ENSSFOG00015023358	prdm4	99	63.670	ENSMFAG00000041862	PRDM4	99	63.670	Macaca_fascicularis
ENSSFOG00015023358	prdm4	99	63.670	ENSMMUG00000015550	PRDM4	99	63.670	Macaca_mulatta
ENSSFOG00015023358	prdm4	99	63.916	ENSMNEG00000032319	PRDM4	99	63.916	Macaca_nemestrina
ENSSFOG00015023358	prdm4	99	63.547	ENSMLEG00000039607	PRDM4	99	63.547	Mandrillus_leucophaeus
ENSSFOG00015023358	prdm4	98	59.603	ENSMGAG00000012815	PRDM4	99	59.603	Meleagris_gallopavo
ENSSFOG00015023358	prdm4	99	63.424	ENSMICG00000007807	PRDM4	99	63.424	Microcebus_murinus
ENSSFOG00015023358	prdm4	98	63.457	ENSMOCG00000000753	Prdm4	99	63.333	Microtus_ochrogaster
ENSSFOG00015023358	prdm4	98	63.333	ENSMUSG00000035529	Prdm4	99	63.333	Mus_musculus
ENSSFOG00015023358	prdm4	98	63.502	MGP_PahariEiJ_G0031398	Prdm4	99	63.502	Mus_pahari
ENSSFOG00015023358	prdm4	98	63.502	MGP_SPRETEiJ_G0016505	Prdm4	99	63.502	Mus_spretus
ENSSFOG00015023358	prdm4	99	58.262	ENSMPUG00000012238	PRDM4	99	58.924	Mustela_putorius_furo
ENSSFOG00015023358	prdm4	99	63.547	ENSMLUG00000000767	PRDM4	99	63.547	Myotis_lucifugus
ENSSFOG00015023358	prdm4	99	62.762	ENSNGAG00000018627	Prdm4	99	63.625	Nannospalax_galili
ENSSFOG00015023358	prdm4	99	63.670	ENSNLEG00000006748	PRDM4	99	63.670	Nomascus_leucogenys
ENSSFOG00015023358	prdm4	87	67.780	ENSMEUG00000004495	PRDM4	86	67.780	Notamacropus_eugenii
ENSSFOG00015023358	prdm4	87	68.657	ENSOPRG00000010192	PRDM4	88	68.060	Ochotona_princeps
ENSSFOG00015023358	prdm4	98	62.252	ENSODEG00000014750	PRDM4	99	62.546	Octodon_degus
ENSSFOG00015023358	prdm4	99	63.961	ENSOANG00000005526	PRDM4	99	64.699	Ornithorhynchus_anatinus
ENSSFOG00015023358	prdm4	94	63.687	ENSOCUG00000012859	PRDM4	96	64.106	Oryctolagus_cuniculus
ENSSFOG00015023358	prdm4	98	63.625	ENSOGAG00000011945	PRDM4	99	63.625	Otolemur_garnettii
ENSSFOG00015023358	prdm4	99	63.625	ENSOARG00000017955	PRDM4	99	64.286	Ovis_aries
ENSSFOG00015023358	prdm4	99	63.793	ENSPPAG00000038438	PRDM4	99	63.793	Pan_paniscus
ENSSFOG00015023358	prdm4	99	63.255	ENSPPRG00000004144	PRDM4	99	63.793	Panthera_pardus
ENSSFOG00015023358	prdm4	99	63.255	ENSPTIG00000005847	PRDM4	99	63.793	Panthera_tigris_altaica
ENSSFOG00015023358	prdm4	99	63.793	ENSPTRG00000005400	PRDM4	99	63.793	Pan_troglodytes
ENSSFOG00015023358	prdm4	99	63.670	ENSPANG00000022084	PRDM4	99	63.670	Papio_anubis
ENSSFOG00015023358	prdm4	99	84.108	ENSPKIG00000000875	prdm4	99	83.985	Paramormyrops_kingsleyae
ENSSFOG00015023358	prdm4	86	70.652	ENSPSIG00000012066	PRDM4	99	70.652	Pelodiscus_sinensis
ENSSFOG00015023358	prdm4	98	62.885	ENSPEMG00000014598	Prdm4	99	63.132	Peromyscus_maniculatus_bairdii
ENSSFOG00015023358	prdm4	98	64.684	ENSPCIG00000009471	PRDM4	99	64.054	Phascolarctos_cinereus
ENSSFOG00015023358	prdm4	99	63.547	ENSPPYG00000004913	PRDM4	99	63.547	Pongo_abelii
ENSSFOG00015023358	prdm4	83	63.636	ENSPCAG00000009987	PRDM4	82	64.444	Procavia_capensis
ENSSFOG00015023358	prdm4	99	63.547	ENSPCOG00000021060	PRDM4	99	63.547	Propithecus_coquereli
ENSSFOG00015023358	prdm4	99	63.547	ENSPVAG00000001596	PRDM4	99	63.424	Pteropus_vampyrus
ENSSFOG00015023358	prdm4	98	63.054	ENSRNOG00000004962	Prdm4	99	63.177	Rattus_norvegicus
ENSSFOG00015023358	prdm4	99	63.670	ENSRBIG00000035488	PRDM4	99	63.670	Rhinopithecus_bieti
ENSSFOG00015023358	prdm4	99	63.670	ENSRROG00000012779	PRDM4	99	63.670	Rhinopithecus_roxellana
ENSSFOG00015023358	prdm4	99	69.427	ENSSBOG00000000403	PRDM4	99	63.670	Saimiri_boliviensis_boliviensis
ENSSFOG00015023358	prdm4	99	63.670	ENSSSCG00000000160	PRDM4	99	63.793	Sus_scrofa
ENSSFOG00015023358	prdm4	99	63.793	ENSTGUG00000010962	-	99	63.793	Taeniopygia_guttata
ENSSFOG00015023358	prdm4	81	56.146	ENSTBEG00000001732	PRDM4	84	56.146	Tupaia_belangeri
ENSSFOG00015023358	prdm4	99	63.793	ENSTTRG00000011056	PRDM4	99	63.793	Tursiops_truncatus
ENSSFOG00015023358	prdm4	99	63.502	ENSUAMG00000022796	PRDM4	99	64.039	Ursus_americanus
ENSSFOG00015023358	prdm4	99	63.502	ENSUMAG00000017231	PRDM4	99	64.039	Ursus_maritimus
ENSSFOG00015023358	prdm4	98	63.872	ENSVPAG00000002215	PRDM4	99	63.625	Vicugna_pacos
ENSSFOG00015023358	prdm4	99	63.255	ENSVVUG00000023397	PRDM4	99	63.793	Vulpes_vulpes