EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSFOG00015023514 (Gene tree)
Gene ID
108931291
Gene Symbol
pabpc4
Alias
cb12|sb:cb12
Full Name
poly(A) binding protein cytoplasmic 4
Gene Type
protein_coding
Species
Scleropages_formosus
Status
putative
Strand
Plus strand
Length
8553 bases
Position
chrKV410955.1:209853-218405
Accession
108931291
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSFOP00015036955PABPPF00658.184.2e-3111
ENSSFOP00015036955RRM_5PF13893.62.1e-0811
ENSSFOP00015036955RRM_1PF00076.223.5e-8414
ENSSFOP00015036955RRM_1PF00076.223.5e-8424
ENSSFOP00015036955RRM_1PF00076.223.5e-8434
ENSSFOP00015036955RRM_1PF00076.223.5e-8444
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSFOT00015037357-1839XM_018746964ENSSFOP00015036955612 (aa)XP_018602480A0A1W4ZP17
Gene Model
Click here to download ENSSFOG00015023514's gene model file
Pathways
Pathway IDPathway NameSource
sfm03013RNA transportKEGG
sfm03015mRNA surveillance pathwayKEGG
sfm03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015023514's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSFOG00015023514pabpc45831.061ENSSFOG00015023630elavl39130.827
ENSSFOG00015023514pabpc45734.940ENSSFOG00015015838elavl48734.940
ENSSFOG00015023514pabpc45836.145ENSSFOG00015018252elavl28536.145
ENSSFOG00015023514pabpc45037.500ENSSFOG00015004376celf5a6437.500
ENSSFOG00015023514pabpc45774.522ENSSFOG00015019668-6674.522
ENSSFOG00015023514pabpc49976.585ENSSFOG00015006662pabpc1a9976.585
ENSSFOG00015023514pabpc47138.636ENSSFOG00015016756-9538.636
ENSSFOG00015023514pabpc49771.144ENSSFOG00015017304pabpc1l9571.144
ENSSFOG00015023514pabpc45635.606ENSSFOG00015021786ELAVL19035.606
ENSSFOG00015023514pabpc49976.948ENSSFOG00015002752-9976.948
ENSSFOG00015023514pabpc45637.121ENSSFOG00015017503-9037.121
ENSSFOG00015023514pabpc45337.500ENSSFOG00015010315celf5b6435.354
ENSSFOG00015023514pabpc45631.818ENSSFOG00015001257ELAVL29031.818
ENSSFOG00015023514pabpc49872.562ENSSFOG00015006617-9971.732
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSFOG00015023514pabpc49985.714ENSG00000090621PABPC49899.038Homo_sapiens
ENSSFOG00015023514pabpc49891.847ENSAPOG00000001161pabpc49990.850Acanthochromis_polyacanthus
ENSSFOG00015023514pabpc49949.918ENSAMEG00000015083-9549.918Ailuropoda_melanoleuca
ENSSFOG00015023514pabpc49981.975ENSAMEG00000011535-9981.975Ailuropoda_melanoleuca
ENSSFOG00015023514pabpc410091.503ENSACIG00000023343pabpc49991.503Amphilophus_citrinellus
ENSSFOG00015023514pabpc49991.542ENSAOCG00000021529pabpc49990.850Amphiprion_ocellaris
ENSSFOG00015023514pabpc49991.542ENSAPEG00000019196pabpc49990.850Amphiprion_percula
ENSSFOG00015023514pabpc49991.391ENSATEG00000007402pabpc49990.865Anabas_testudineus
ENSSFOG00015023514pabpc49989.145ENSAPLG00000009729-9989.145Anas_platyrhynchos
ENSSFOG00015023514pabpc49986.833ENSACAG00000002544PABPC49986.833Anolis_carolinensis
ENSSFOG00015023514pabpc49985.714ENSANAG00000025079PABPC49985.714Aotus_nancymaae
ENSSFOG00015023514pabpc410091.176ENSACLG00000019558pabpc49991.176Astatotilapia_calliptera
ENSSFOG00015023514pabpc410086.111ENSAMXG00000018779pabpc49986.111Astyanax_mexicanus
ENSSFOG00015023514pabpc45589.510ENSBTAG00000048536-8689.510Bos_taurus
ENSSFOG00015023514pabpc49983.040ENSBTAG00000017125PABPC49983.628Bos_taurus
ENSSFOG00015023514pabpc46479.325ENSCJAG00000045953-8979.325Callithrix_jacchus
ENSSFOG00015023514pabpc49985.714ENSCJAG00000002512-9985.714Callithrix_jacchus
ENSSFOG00015023514pabpc49985.878ENSCAFG00000003081PABPC49985.878Canis_familiaris
ENSSFOG00015023514pabpc49586.278ENSCAFG00020004161PABPC49982.132Canis_lupus_dingo
ENSSFOG00015023514pabpc49966.775ENSCHIG00000023385-9866.775Capra_hircus
ENSSFOG00015023514pabpc49981.875ENSCHIG00000019398-9981.975Capra_hircus
ENSSFOG00015023514pabpc49985.714ENSTSYG00000006532PABPC49985.714Carlito_syrichta
ENSSFOG00015023514pabpc49984.142ENSCAPG00000015984PABPC49985.386Cavia_aperea
ENSSFOG00015023514pabpc49984.466ENSCPOG00000009552PABPC49985.714Cavia_porcellus
ENSSFOG00015023514pabpc49985.714ENSCCAG00000037306PABPC49985.714Cebus_capucinus
ENSSFOG00015023514pabpc49985.714ENSCATG00000042164PABPC49985.714Cercocebus_atys
ENSSFOG00015023514pabpc49984.628ENSCLAG00000011899PABPC49985.714Chinchilla_lanigera
ENSSFOG00015023514pabpc49981.875ENSCSAG00000001135PABPC49981.975Chlorocebus_sabaeus
ENSSFOG00015023514pabpc48589.211ENSCHOG00000005327PABPC48089.211Choloepus_hoffmanni
ENSSFOG00015023514pabpc49988.816ENSCPBG00000001038PABPC49988.816Chrysemys_picta_bellii
ENSSFOG00015023514pabpc49985.714ENSCANG00000034177PABPC49985.714Colobus_angolensis_palliatus
ENSSFOG00015023514pabpc49883.934ENSCGRG00001018166Pabpc49985.155Cricetulus_griseus_chok1gshd
ENSSFOG00015023514pabpc49884.091ENSCGRG00000009777Pabpc410085.155Cricetulus_griseus_crigri
ENSSFOG00015023514pabpc410090.196ENSCSEG00000000130pabpc49990.196Cynoglossus_semilaevis
ENSSFOG00015023514pabpc49990.789ENSCVAG00000019246pabpc49990.789Cyprinodon_variegatus
ENSSFOG00015023514pabpc49892.857ENSDARG00000059259pabpc49992.573Danio_rerio
ENSSFOG00015023514pabpc49984.725ENSDNOG00000018444-9984.725Dasypus_novemcinctus
ENSSFOG00015023514pabpc49983.494ENSDORG00000011581Pabpc49983.601Dipodomys_ordii
ENSSFOG00015023514pabpc499100.000ENSETEG00000018453-80100.000Echinops_telfairi
ENSSFOG00015023514pabpc48954.762ENSETEG00000009172-9954.809Echinops_telfairi
ENSSFOG00015023514pabpc49677.534ENSEBUG00000013782pabpc49976.821Eptatretus_burgeri
ENSSFOG00015023514pabpc49976.606ENSEBUG00000000992pabpc49976.606Eptatretus_burgeri
ENSSFOG00015023514pabpc49982.031ENSEASG00005014119PABPC49982.132Equus_asinus_asinus
ENSSFOG00015023514pabpc49982.031ENSECAG00000009396PABPC49982.132Equus_caballus
ENSSFOG00015023514pabpc49780.702ENSEEUG00000002962PABPC49980.408Erinaceus_europaeus
ENSSFOG00015023514pabpc49891.362ENSELUG00000003195pabpc49990.701Esox_lucius
ENSSFOG00015023514pabpc49985.878ENSFCAG00000015254-9985.878Felis_catus
ENSSFOG00015023514pabpc49988.158ENSFALG00000000543PABPC49988.158Ficedula_albicollis
ENSSFOG00015023514pabpc49982.031ENSFDAG00000020016-9982.132Fukomys_damarensis
ENSSFOG00015023514pabpc49253.911ENSFDAG00000010581-9952.234Fukomys_damarensis
ENSSFOG00015023514pabpc410090.523ENSFHEG00000007548pabpc49990.523Fundulus_heteroclitus
ENSSFOG00015023514pabpc410087.908ENSGMOG00000019025pabpc49987.908Gadus_morhua
ENSSFOG00015023514pabpc49989.474ENSGALG00000003800PABPC49989.474Gallus_gallus
ENSSFOG00015023514pabpc410089.869ENSGAFG00000018195pabpc410097.129Gambusia_affinis
ENSSFOG00015023514pabpc410089.052ENSGACG00000007179pabpc49989.233Gasterosteus_aculeatus
ENSSFOG00015023514pabpc49989.145ENSGAGG00000001888PABPC49989.145Gopherus_agassizii
ENSSFOG00015023514pabpc49985.714ENSGGOG00000004002PABPC49985.714Gorilla_gorilla
ENSSFOG00015023514pabpc410091.013ENSHBUG00000020206pabpc49991.013Haplochromis_burtoni
ENSSFOG00015023514pabpc49984.304ENSHGLG00000011162PABPC49985.550Heterocephalus_glaber_female
ENSSFOG00015023514pabpc49984.304ENSHGLG00100001580PABPC49985.550Heterocephalus_glaber_male
ENSSFOG00015023514pabpc410089.216ENSHCOG00000012694pabpc49989.869Hippocampus_comes
ENSSFOG00015023514pabpc49792.605ENSIPUG00000016620pabpc49991.830Ictalurus_punctatus
ENSSFOG00015023514pabpc49985.173ENSSTOG00000010416PABPC49985.173Ictidomys_tridecemlineatus
ENSSFOG00015023514pabpc49981.862ENSJJAG00000007781Pabpc49982.315Jaculus_jaculus
ENSSFOG00015023514pabpc410089.886ENSKMAG00000013597pabpc49989.886Kryptolebias_marmoratus
ENSSFOG00015023514pabpc410089.233ENSLBEG00000013654pabpc49989.233Labrus_bergylta
ENSSFOG00015023514pabpc49988.342ENSLACG00000011907PABPC49988.342Latimeria_chalumnae
ENSSFOG00015023514pabpc49991.749ENSLOCG00000001877pabpc49891.749Lepisosteus_oculatus
ENSSFOG00015023514pabpc49985.173ENSLAFG00000000151PABPC49985.173Loxodonta_africana
ENSSFOG00015023514pabpc49985.714ENSMFAG00000041481PABPC49985.714Macaca_fascicularis
ENSSFOG00015023514pabpc49981.875ENSMMUG00000007497PABPC49981.975Macaca_mulatta
ENSSFOG00015023514pabpc49985.714ENSMNEG00000043054PABPC49985.714Macaca_nemestrina
ENSSFOG00015023514pabpc49985.714ENSMLEG00000040716PABPC49985.714Mandrillus_leucophaeus
ENSSFOG00015023514pabpc49991.708ENSMAMG00000010025pabpc49991.340Mastacembelus_armatus
ENSSFOG00015023514pabpc410091.013ENSMZEG00005006141pabpc49991.013Maylandia_zebra
ENSSFOG00015023514pabpc49984.576ENSMGAG00000005408PABPC49985.254Meleagris_gallopavo
ENSSFOG00015023514pabpc47489.583ENSMAUG00000019763-7986.239Mesocricetus_auratus
ENSSFOG00015023514pabpc46280.000ENSMAUG00000001295-9780.000Mesocricetus_auratus
ENSSFOG00015023514pabpc45883.019ENSMAUG00000004089-8883.019Mesocricetus_auratus
ENSSFOG00015023514pabpc49974.645ENSMICG00000036729-9974.645Microcebus_murinus
ENSSFOG00015023514pabpc48884.387ENSMICG00000016633-9984.944Microcebus_murinus
ENSSFOG00015023514pabpc410084.455ENSMOCG00000006763Pabpc49985.528Microtus_ochrogaster
ENSSFOG00015023514pabpc410087.745ENSMMOG00000002363pabpc49987.582Mola_mola
ENSSFOG00015023514pabpc45872.881ENSMODG00000018051-9172.881Monodelphis_domestica
ENSSFOG00015023514pabpc49784.776ENSMODG00000017657-9984.543Monodelphis_domestica
ENSSFOG00015023514pabpc49991.240ENSMALG00000011017pabpc49990.717Monopterus_albus
ENSSFOG00015023514pabpc49972.348MGP_CAROLIEiJ_G0024864-9972.318Mus_caroli
ENSSFOG00015023514pabpc49981.847MGP_CAROLIEiJ_G0026435-10096.454Mus_caroli
ENSSFOG00015023514pabpc49984.843ENSMUSG00000011257Pabpc49897.203Mus_musculus
ENSSFOG00015023514pabpc49981.719MGP_PahariEiJ_G0028765Pabpc410097.163Mus_pahari
ENSSFOG00015023514pabpc49970.133MGP_SPRETEiJ_G0027415Pabpc410097.163Mus_spretus
ENSSFOG00015023514pabpc49647.199ENSMPUG00000006836-9747.199Mustela_putorius_furo
ENSSFOG00015023514pabpc49982.031ENSMPUG00000014414-9982.132Mustela_putorius_furo
ENSSFOG00015023514pabpc49984.843ENSMLUG00000012068PABPC49984.843Myotis_lucifugus
ENSSFOG00015023514pabpc49985.173ENSNGAG00000018292Pabpc49985.173Nannospalax_galili
ENSSFOG00015023514pabpc45397.590ENSNBRG00000010047-7297.590Neolamprologus_brichardi
ENSSFOG00015023514pabpc45996.875ENSNBRG00000009708pabpc49896.875Neolamprologus_brichardi
ENSSFOG00015023514pabpc49985.714ENSNLEG00000011928PABPC49985.714Nomascus_leucogenys
ENSSFOG00015023514pabpc48490.476ENSOPRG00000011984PABPC48690.476Ochotona_princeps
ENSSFOG00015023514pabpc49976.261ENSODEG00000017434-9976.261Octodon_degus
ENSSFOG00015023514pabpc49984.142ENSODEG00000006592-9985.222Octodon_degus
ENSSFOG00015023514pabpc45482.857ENSODEG00000013457-10082.857Octodon_degus
ENSSFOG00015023514pabpc410091.176ENSONIG00000008176pabpc49991.176Oreochromis_niloticus
ENSSFOG00015023514pabpc49988.487ENSOANG00000010001PABPC49988.487Ornithorhynchus_anatinus
ENSSFOG00015023514pabpc49581.759ENSOCUG00000000562PABPC48881.863Oryctolagus_cuniculus
ENSSFOG00015023514pabpc49994.983ENSORLG00000017479pabpc49894.983Oryzias_latipes
ENSSFOG00015023514pabpc49994.983ENSORLG00020018644pabpc49994.983Oryzias_latipes_hni
ENSSFOG00015023514pabpc49994.983ENSORLG00015015042pabpc49994.983Oryzias_latipes_hsok
ENSSFOG00015023514pabpc49989.718ENSOMEG00000014410pabpc49989.052Oryzias_melastigma
ENSSFOG00015023514pabpc49983.360ENSOGAG00000004067PABPC49983.520Otolemur_garnettii
ENSSFOG00015023514pabpc49981.875ENSOARG00000020060PABPC49981.975Ovis_aries
ENSSFOG00015023514pabpc49985.714ENSPPAG00000043625PABPC49985.714Pan_paniscus
ENSSFOG00015023514pabpc49985.878ENSPPRG00000024727PABPC49985.878Panthera_pardus
ENSSFOG00015023514pabpc49985.878ENSPTIG00000005829PABPC49985.878Panthera_tigris_altaica
ENSSFOG00015023514pabpc49985.714ENSPTRG00000000573PABPC49985.714Pan_troglodytes
ENSSFOG00015023514pabpc49985.714ENSPANG00000009484PABPC49985.714Papio_anubis
ENSSFOG00015023514pabpc49994.059ENSPKIG00000025356pabpc49894.059Paramormyrops_kingsleyae
ENSSFOG00015023514pabpc49989.309ENSPSIG00000016892PABPC49989.309Pelodiscus_sinensis
ENSSFOG00015023514pabpc49987.255ENSPMGG00000009073pabpc49987.255Periophthalmus_magnuspinnatus
ENSSFOG00015023514pabpc49981.392ENSPEMG00000024193-9981.392Peromyscus_maniculatus_bairdii
ENSSFOG00015023514pabpc49984.790ENSPEMG00000023569-9985.550Peromyscus_maniculatus_bairdii
ENSSFOG00015023514pabpc49572.279ENSPMAG00000007885pabpc49971.856Petromyzon_marinus
ENSSFOG00015023514pabpc48874.684ENSPMAG00000002836pabpc49975.588Petromyzon_marinus
ENSSFOG00015023514pabpc49788.294ENSPCIG00000020674PABPC49994.231Phascolarctos_cinereus
ENSSFOG00015023514pabpc410090.033ENSPFOG00000002682pabpc49990.033Poecilia_formosa
ENSSFOG00015023514pabpc410090.196ENSPLAG00000010112pabpc49990.196Poecilia_latipinna
ENSSFOG00015023514pabpc49891.015ENSPMEG00000019739pabpc49990.196Poecilia_mexicana
ENSSFOG00015023514pabpc410090.523ENSPREG00000001589pabpc49990.523Poecilia_reticulata
ENSSFOG00015023514pabpc49981.875ENSPPYG00000001506PABPC49981.975Pongo_abelii
ENSSFOG00015023514pabpc49977.031ENSPCAG00000003341PABPC49977.116Procavia_capensis
ENSSFOG00015023514pabpc49985.246ENSPCOG00000023725-9985.574Propithecus_coquereli
ENSSFOG00015023514pabpc49969.947ENSPCOG00000025882-9376.203Propithecus_coquereli
ENSSFOG00015023514pabpc49980.936ENSPVAG00000002187PABPC49980.936Pteropus_vampyrus
ENSSFOG00015023514pabpc410091.176ENSPNYG00000006134pabpc49991.176Pundamilia_nyererei
ENSSFOG00015023514pabpc410092.320ENSPNAG00000024355pabpc49992.320Pygocentrus_nattereri
ENSSFOG00015023514pabpc49983.173ENSRNOG00000015642Pabpc49983.280Rattus_norvegicus
ENSSFOG00015023514pabpc49981.090ENSRNOG00000028592AABR07035074.19981.190Rattus_norvegicus
ENSSFOG00015023514pabpc49985.714ENSRBIG00000039761PABPC49985.714Rhinopithecus_bieti
ENSSFOG00015023514pabpc49985.714ENSRROG00000033355PABPC49985.714Rhinopithecus_roxellana
ENSSFOG00015023514pabpc49985.714ENSSBOG00000026193PABPC49985.714Saimiri_boliviensis_boliviensis
ENSSFOG00015023514pabpc49788.294ENSSHAG00000018139PABPC49987.993Sarcophilus_harrisii
ENSSFOG00015023514pabpc410089.869ENSSMAG00000009007pabpc49989.869Scophthalmus_maximus
ENSSFOG00015023514pabpc49991.708ENSSDUG00000012683pabpc49991.176Seriola_dumerili
ENSSFOG00015023514pabpc49991.708ENSSLDG00000013025pabpc49991.176Seriola_lalandi_dorsalis
ENSSFOG00015023514pabpc49976.972ENSSARG00000000310PABPC49677.057Sorex_araneus
ENSSFOG00015023514pabpc49988.119ENSSPUG00000003204PABPC49988.119Sphenodon_punctatus
ENSSFOG00015023514pabpc49991.211ENSSPAG00000009252pabpc49990.523Stegastes_partitus
ENSSFOG00015023514pabpc49985.878ENSSSCG00000003660-9985.878Sus_scrofa
ENSSFOG00015023514pabpc49244.852ENSSSCG00000036170-9544.852Sus_scrofa
ENSSFOG00015023514pabpc49982.473ENSTGUG00000001266PABPC49983.881Taeniopygia_guttata
ENSSFOG00015023514pabpc410089.869ENSTRUG00000005907pabpc49989.869Takifugu_rubripes
ENSSFOG00015023514pabpc410084.150ENSTNIG00000016902pabpc49984.150Tetraodon_nigroviridis
ENSSFOG00015023514pabpc49570.667ENSTBEG00000009035PABPC49970.903Tupaia_belangeri
ENSSFOG00015023514pabpc49261.552ENSTTRG00000014340PABPC49970.067Tursiops_truncatus
ENSSFOG00015023514pabpc49985.878ENSUAMG00000000303PABPC49985.878Ursus_americanus
ENSSFOG00015023514pabpc49990.385ENSUMAG00000019585PABPC49990.385Ursus_maritimus
ENSSFOG00015023514pabpc47169.745ENSVPAG00000010041PABPC46969.745Vicugna_pacos
ENSSFOG00015023514pabpc49985.878ENSVVUG00000005215PABPC49985.878Vulpes_vulpes
ENSSFOG00015023514pabpc49984.236ENSXETG00000010946pabpc49984.236Xenopus_tropicalis
ENSSFOG00015023514pabpc46598.601ENSXETG00000027221-9898.601Xenopus_tropicalis
ENSSFOG00015023514pabpc49296.834ENSXCOG00000013190pabpc49695.283Xiphophorus_couchianus
ENSSFOG00015023514pabpc410090.523ENSXMAG00000019007pabpc49990.523Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us