EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015023663 (Gene tree)
Gene ID: 108926633
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 6160 bases
Position: chrKV410855.1:2845250-2851409
Accession: 108926633
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015037186	HVSL	PF09749.9	1.7e-62	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015037591	-	1998	XM_018739452	ENSSFOP00015037186	317 (aa)	XP_018594968	A0A1W4Z2S5

Gene Model

Click here to download ENSSFOG00015023663's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015023663's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015023663	usb1	75	55.042	ENSG00000103005	USB1	99	56.808	Homo_sapiens
ENSSFOG00015023663	usb1	91	56.944	ENSAPOG00000011942	usb1	89	57.934	Acanthochromis_polyacanthus
ENSSFOG00015023663	usb1	71	57.709	ENSAMEG00000017205	USB1	84	57.709	Ailuropoda_melanoleuca
ENSSFOG00015023663	usb1	71	68.444	ENSACIG00000012234	usb1	83	68.444	Amphilophus_citrinellus
ENSSFOG00015023663	usb1	91	58.681	ENSAOCG00000014831	usb1	79	66.816	Amphiprion_ocellaris
ENSSFOG00015023663	usb1	91	59.028	ENSAPEG00000000296	usb1	79	67.265	Amphiprion_percula
ENSSFOG00015023663	usb1	91	58.333	ENSATEG00000009348	usb1	90	60.078	Anabas_testudineus
ENSSFOG00015023663	usb1	70	61.333	ENSAPLG00000002756	USB1	99	61.778	Anas_platyrhynchos
ENSSFOG00015023663	usb1	71	54.185	ENSACAG00000015481	USB1	99	54.185	Anolis_carolinensis
ENSSFOG00015023663	usb1	75	55.462	ENSANAG00000035640	USB1	89	55.462	Aotus_nancymaae
ENSSFOG00015023663	usb1	91	58.076	ENSACLG00000020586	usb1	99	58.076	Astatotilapia_calliptera
ENSSFOG00015023663	usb1	93	60.067	ENSAMXG00000040146	usb1	97	60.067	Astyanax_mexicanus
ENSSFOG00015023663	usb1	91	49.653	ENSBTAG00000015758	USB1	87	56.710	Bos_taurus
ENSSFOG00015023663	usb1	73	56.277	ENSCJAG00000011733	USB1	87	56.277	Callithrix_jacchus
ENSSFOG00015023663	usb1	71	56.828	ENSCAFG00000008556	USB1	61	56.828	Canis_familiaris
ENSSFOG00015023663	usb1	91	49.306	ENSCAFG00020009263	USB1	85	56.828	Canis_lupus_dingo
ENSSFOG00015023663	usb1	91	49.306	ENSCHIG00000024290	USB1	87	56.277	Capra_hircus
ENSSFOG00015023663	usb1	73	54.978	ENSTSYG00000006997	USB1	87	54.978	Carlito_syrichta
ENSSFOG00015023663	usb1	73	46.320	ENSCAPG00000009057	USB1	99	46.320	Cavia_aperea
ENSSFOG00015023663	usb1	79	54.365	ENSCPOG00000014325	USB1	94	54.365	Cavia_porcellus
ENSSFOG00015023663	usb1	75	55.882	ENSCCAG00000022132	USB1	89	55.882	Cebus_capucinus
ENSSFOG00015023663	usb1	73	56.277	ENSCATG00000032174	USB1	87	56.277	Cercocebus_atys
ENSSFOG00015023663	usb1	53	58.824	ENSCLAG00000007363	USB1	97	58.824	Chinchilla_lanigera
ENSSFOG00015023663	usb1	75	55.882	ENSCSAG00000004783	USB1	89	55.882	Chlorocebus_sabaeus
ENSSFOG00015023663	usb1	72	58.772	ENSCPBG00000026943	USB1	82	58.772	Chrysemys_picta_bellii
ENSSFOG00015023663	usb1	70	34.632	ENSCING00000011490	-	97	33.977	Ciona_intestinalis
ENSSFOG00015023663	usb1	71	32.328	ENSCSAVG00000000894	-	85	32.051	Ciona_savignyi
ENSSFOG00015023663	usb1	76	54.959	ENSCANG00000037135	USB1	98	51.515	Colobus_angolensis_palliatus
ENSSFOG00015023663	usb1	91	49.827	ENSCGRG00001011243	USB1	86	55.844	Cricetulus_griseus_chok1gshd
ENSSFOG00015023663	usb1	91	49.827	ENSCGRG00000013252	USB1	86	55.844	Cricetulus_griseus_crigri
ENSSFOG00015023663	usb1	91	51.536	ENSCSEG00000013881	usb1	87	56.667	Cynoglossus_semilaevis
ENSSFOG00015023663	usb1	70	61.674	ENSCVAG00000009252	usb1	97	61.947	Cyprinodon_variegatus
ENSSFOG00015023663	usb1	81	61.089	ENSDARG00000003841	usb1	93	60.606	Danio_rerio
ENSSFOG00015023663	usb1	71	55.507	ENSDORG00000001888	Usb1	86	55.507	Dipodomys_ordii
ENSSFOG00015023663	usb1	72	37.238	FBgn0037713	CG16790	90	37.238	Drosophila_melanogaster
ENSSFOG00015023663	usb1	79	43.939	ENSETEG00000019682	USB1	99	43.939	Echinops_telfairi
ENSSFOG00015023663	usb1	71	45.778	ENSEBUG00000005889	usb1	79	45.778	Eptatretus_burgeri
ENSSFOG00015023663	usb1	73	57.576	ENSEASG00005005484	USB1	87	57.576	Equus_asinus_asinus
ENSSFOG00015023663	usb1	73	56.897	ENSECAG00000019493	USB1	80	56.897	Equus_caballus
ENSSFOG00015023663	usb1	53	54.706	ENSEEUG00000000154	USB1	64	54.706	Erinaceus_europaeus
ENSSFOG00015023663	usb1	72	65.368	ENSELUG00000010974	usb1	85	64.957	Esox_lucius
ENSSFOG00015023663	usb1	71	56.828	ENSFCAG00000002693	USB1	85	56.828	Felis_catus
ENSSFOG00015023663	usb1	72	58.874	ENSFALG00000006876	USB1	87	59.052	Ficedula_albicollis
ENSSFOG00015023663	usb1	74	55.274	ENSFDAG00000010052	USB1	88	55.274	Fukomys_damarensis
ENSSFOG00015023663	usb1	81	53.788	ENSFHEG00000012334	usb1	77	63.212	Fundulus_heteroclitus
ENSSFOG00015023663	usb1	70	64.253	ENSGMOG00000004228	usb1	99	64.253	Gadus_morhua
ENSSFOG00015023663	usb1	70	57.399	ENSGALG00000035604	USB1	98	53.815	Gallus_gallus
ENSSFOG00015023663	usb1	91	57.785	ENSGAFG00000021890	usb1	93	59.542	Gambusia_affinis
ENSSFOG00015023663	usb1	80	59.684	ENSGACG00000003257	usb1	90	59.684	Gasterosteus_aculeatus
ENSSFOG00015023663	usb1	91	51.546	ENSGAGG00000022572	USB1	84	57.895	Gopherus_agassizii
ENSSFOG00015023663	usb1	75	55.462	ENSGGOG00000017147	USB1	89	55.462	Gorilla_gorilla
ENSSFOG00015023663	usb1	80	60.311	ENSHBUG00000009823	usb1	99	58.076	Haplochromis_burtoni
ENSSFOG00015023663	usb1	73	55.603	ENSHGLG00000016078	USB1	85	55.603	Heterocephalus_glaber_female
ENSSFOG00015023663	usb1	73	55.603	ENSHGLG00100005562	USB1	85	55.603	Heterocephalus_glaber_male
ENSSFOG00015023663	usb1	68	63.256	ENSHCOG00000015633	usb1	86	63.514	Hippocampus_comes
ENSSFOG00015023663	usb1	94	59.344	ENSIPUG00000008601	usb1	78	70.536	Ictalurus_punctatus
ENSSFOG00015023663	usb1	71	57.778	ENSSTOG00000007548	USB1	82	57.778	Ictidomys_tridecemlineatus
ENSSFOG00015023663	usb1	91	52.083	ENSJJAG00000021859	Usb1	97	54.615	Jaculus_jaculus
ENSSFOG00015023663	usb1	70	64.126	ENSKMAG00000007200	usb1	79	63.839	Kryptolebias_marmoratus
ENSSFOG00015023663	usb1	66	63.636	ENSLBEG00000008452	usb1	67	63.636	Labrus_bergylta
ENSSFOG00015023663	usb1	80	51.765	ENSLACG00000000105	USB1	71	59.512	Latimeria_chalumnae
ENSSFOG00015023663	usb1	70	64.286	ENSLOCG00000000465	usb1	99	53.872	Lepisosteus_oculatus
ENSSFOG00015023663	usb1	91	42.373	ENSLAFG00000002267	USB1	97	42.349	Loxodonta_africana
ENSSFOG00015023663	usb1	73	56.277	ENSMFAG00000003926	USB1	87	56.277	Macaca_fascicularis
ENSSFOG00015023663	usb1	73	56.277	ENSMMUG00000022669	USB1	87	56.277	Macaca_mulatta
ENSSFOG00015023663	usb1	73	55.844	ENSMNEG00000042487	USB1	87	55.844	Macaca_nemestrina
ENSSFOG00015023663	usb1	73	56.277	ENSMLEG00000028756	USB1	87	56.277	Mandrillus_leucophaeus
ENSSFOG00015023663	usb1	91	57.986	ENSMAMG00000015092	usb1	95	58.647	Mastacembelus_armatus
ENSSFOG00015023663	usb1	80	60.700	ENSMZEG00005010008	usb1	99	58.419	Maylandia_zebra
ENSSFOG00015023663	usb1	91	50.000	ENSMAUG00000007832	Usb1	87	57.143	Mesocricetus_auratus
ENSSFOG00015023663	usb1	71	59.031	ENSMICG00000004900	USB1	87	58.442	Microcebus_murinus
ENSSFOG00015023663	usb1	91	50.000	ENSMOCG00000022647	Usb1	87	56.710	Microtus_ochrogaster
ENSSFOG00015023663	usb1	72	63.436	ENSMMOG00000000490	usb1	88	63.436	Mola_mola
ENSSFOG00015023663	usb1	68	56.682	ENSMODG00000014067	USB1	91	53.333	Monodelphis_domestica
ENSSFOG00015023663	usb1	80	60.079	ENSMALG00000005930	usb1	88	60.079	Monopterus_albus
ENSSFOG00015023663	usb1	78	53.012	MGP_CAROLIEiJ_G0031421	Usb1	100	51.327	Mus_caroli
ENSSFOG00015023663	usb1	78	52.610	ENSMUSG00000031792	Usb1	100	50.442	Mus_musculus
ENSSFOG00015023663	usb1	74	55.696	MGP_PahariEiJ_G0023019	Usb1	100	52.137	Mus_pahari
ENSSFOG00015023663	usb1	78	52.610	MGP_SPRETEiJ_G0032540	Usb1	93	52.610	Mus_spretus
ENSSFOG00015023663	usb1	71	56.388	ENSMPUG00000004684	USB1	81	56.388	Mustela_putorius_furo
ENSSFOG00015023663	usb1	71	57.709	ENSMLUG00000007400	USB1	98	57.709	Myotis_lucifugus
ENSSFOG00015023663	usb1	75	57.500	ENSNGAG00000009703	Usb1	99	53.759	Nannospalax_galili
ENSSFOG00015023663	usb1	80	56.371	ENSNBRG00000008747	usb1	99	64.151	Neolamprologus_brichardi
ENSSFOG00015023663	usb1	69	55.909	ENSNLEG00000003340	USB1	89	54.911	Nomascus_leucogenys
ENSSFOG00015023663	usb1	91	48.621	ENSODEG00000016214	USB1	97	50.769	Octodon_degus
ENSSFOG00015023663	usb1	91	58.419	ENSONIG00000011063	usb1	89	59.328	Oreochromis_niloticus
ENSSFOG00015023663	usb1	70	56.250	ENSOANG00000012118	USB1	94	56.250	Ornithorhynchus_anatinus
ENSSFOG00015023663	usb1	71	63.717	ENSORLG00000012479	usb1	83	63.717	Oryzias_latipes
ENSSFOG00015023663	usb1	71	62.832	ENSORLG00020018671	usb1	83	62.832	Oryzias_latipes_hni
ENSSFOG00015023663	usb1	71	63.717	ENSORLG00015009679	usb1	84	63.717	Oryzias_latipes_hsok
ENSSFOG00015023663	usb1	71	63.717	ENSOMEG00000012930	usb1	82	63.717	Oryzias_melastigma
ENSSFOG00015023663	usb1	73	51.948	ENSOGAG00000003273	USB1	99	48.092	Otolemur_garnettii
ENSSFOG00015023663	usb1	73	56.710	ENSOARG00000001107	USB1	89	56.710	Ovis_aries
ENSSFOG00015023663	usb1	75	55.462	ENSPPAG00000042137	USB1	89	55.462	Pan_paniscus
ENSSFOG00015023663	usb1	71	56.388	ENSPPRG00000024797	USB1	85	56.388	Panthera_pardus
ENSSFOG00015023663	usb1	71	55.947	ENSPTIG00000007506	USB1	85	55.947	Panthera_tigris_altaica
ENSSFOG00015023663	usb1	76	50.413	ENSPTRG00000008172	USB1	99	57.277	Pan_troglodytes
ENSSFOG00015023663	usb1	73	56.277	ENSPANG00000025138	USB1	87	56.277	Papio_anubis
ENSSFOG00015023663	usb1	86	64.388	ENSPKIG00000015109	usb1	93	64.388	Paramormyrops_kingsleyae
ENSSFOG00015023663	usb1	70	42.918	ENSPSIG00000004305	USB1	99	42.918	Pelodiscus_sinensis
ENSSFOG00015023663	usb1	71	59.821	ENSPMGG00000017725	usb1	86	59.821	Periophthalmus_magnuspinnatus
ENSSFOG00015023663	usb1	73	55.411	ENSPEMG00000016183	Usb1	85	55.411	Peromyscus_maniculatus_bairdii
ENSSFOG00015023663	usb1	69	52.018	ENSPMAG00000000462	usb1	94	52.018	Petromyzon_marinus
ENSSFOG00015023663	usb1	91	58.305	ENSPFOG00000011130	usb1	82	65.236	Poecilia_formosa
ENSSFOG00015023663	usb1	91	57.966	ENSPLAG00000009820	usb1	82	64.807	Poecilia_latipinna
ENSSFOG00015023663	usb1	91	59.170	ENSPMEG00000006402	usb1	82	65.236	Poecilia_mexicana
ENSSFOG00015023663	usb1	81	58.140	ENSPREG00000001047	usb1	78	66.321	Poecilia_reticulata
ENSSFOG00015023663	usb1	71	52.212	ENSPPYG00000007401	USB1	89	52.212	Pongo_abelii
ENSSFOG00015023663	usb1	73	57.143	ENSPCOG00000022612	USB1	87	57.143	Propithecus_coquereli
ENSSFOG00015023663	usb1	69	56.164	ENSPVAG00000004613	USB1	85	56.164	Pteropus_vampyrus
ENSSFOG00015023663	usb1	91	58.076	ENSPNYG00000022262	usb1	99	58.076	Pundamilia_nyererei
ENSSFOG00015023663	usb1	81	61.240	ENSPNAG00000011736	usb1	88	61.240	Pygocentrus_nattereri
ENSSFOG00015023663	usb1	78	53.012	ENSRNOG00000013216	Usb1	93	53.012	Rattus_norvegicus
ENSSFOG00015023663	usb1	76	50.826	ENSRBIG00000044466	USB1	99	57.746	Rhinopithecus_bieti
ENSSFOG00015023663	usb1	76	55.372	ENSRROG00000029211	USB1	94	54.000	Rhinopithecus_roxellana
ENSSFOG00015023663	usb1	75	56.303	ENSSBOG00000029362	USB1	89	56.303	Saimiri_boliviensis_boliviensis
ENSSFOG00015023663	usb1	68	54.378	ENSSHAG00000006993	USB1	90	54.348	Sarcophilus_harrisii
ENSSFOG00015023663	usb1	80	57.090	ENSSMAG00000015834	usb1	90	57.090	Scophthalmus_maximus
ENSSFOG00015023663	usb1	71	66.667	ENSSDUG00000002949	usb1	84	66.667	Seriola_dumerili
ENSSFOG00015023663	usb1	71	66.667	ENSSLDG00000014174	usb1	80	66.667	Seriola_lalandi_dorsalis
ENSSFOG00015023663	usb1	67	56.808	ENSSPUG00000006741	USB1	99	56.808	Sphenodon_punctatus
ENSSFOG00015023663	usb1	91	57.292	ENSSPAG00000007484	usb1	79	65.919	Stegastes_partitus
ENSSFOG00015023663	usb1	73	57.143	ENSSSCG00000002807	USB1	86	57.143	Sus_scrofa
ENSSFOG00015023663	usb1	65	62.802	ENSTGUG00000004792	USB1	88	58.874	Taeniopygia_guttata
ENSSFOG00015023663	usb1	91	57.388	ENSTRUG00000021069	usb1	93	60.241	Takifugu_rubripes
ENSSFOG00015023663	usb1	91	50.694	ENSTNIG00000000626	usb1	84	58.222	Tetraodon_nigroviridis
ENSSFOG00015023663	usb1	71	39.823	ENSTBEG00000001507	USB1	94	40.183	Tupaia_belangeri
ENSSFOG00015023663	usb1	71	57.709	ENSUAMG00000016823	USB1	93	54.365	Ursus_americanus
ENSSFOG00015023663	usb1	67	57.746	ENSUMAG00000021369	USB1	99	57.746	Ursus_maritimus
ENSSFOG00015023663	usb1	71	56.828	ENSVVUG00000023700	USB1	88	56.828	Vulpes_vulpes
ENSSFOG00015023663	usb1	67	57.944	ENSXETG00000013795	usb1	98	53.629	Xenopus_tropicalis
ENSSFOG00015023663	usb1	70	66.071	ENSXMAG00000024687	usb1	66	66.071	Xiphophorus_maculatus