EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015023788 (Gene tree)
Gene ID: 108931527
Gene Symbol: upf2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 17268 bases
Position: chrKV410957.1:127825-145092
Accession: 108931527
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015037388	Upf2	PF04050.14	8.2e-30	1	1
ENSSFOP00015037381	Upf2	PF04050.14	8.5e-30	1	1
ENSSFOP00015037381	MIF4G	PF02854.19	1.6e-75	1	3
ENSSFOP00015037381	MIF4G	PF02854.19	1.6e-75	2	3
ENSSFOP00015037381	MIF4G	PF02854.19	1.6e-75	3	3
ENSSFOP00015037388	MIF4G	PF02854.19	2.9e-71	1	3
ENSSFOP00015037388	MIF4G	PF02854.19	2.9e-71	2	3
ENSSFOP00015037388	MIF4G	PF02854.19	2.9e-71	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015037799	-	3798	-	ENSSFOP00015037388	1265 (aa)	-	-
ENSSFOT00015037792	-	5911	XM_018747308	ENSSFOP00015037381	1275 (aa)	XP_018602824	A0A1W4ZQP6

Gene Model

Click here to download ENSSFOG00015023788's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03013	RNA transport	KEGG
sfm03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015023788's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015023788	upf2	100	82.788	ENSG00000151461	UPF2	100	81.698	Homo_sapiens
ENSSFOG00015023788	upf2	100	82.061	ENSAPOG00000015837	UPF2	100	81.668	Acanthochromis_polyacanthus
ENSSFOG00015023788	upf2	100	83.164	ENSAMEG00000004586	UPF2	100	81.761	Ailuropoda_melanoleuca
ENSSFOG00015023788	upf2	100	86.599	ENSACIG00000018078	UPF2	100	87.177	Amphilophus_citrinellus
ENSSFOG00015023788	upf2	100	87.198	ENSAOCG00000016766	UPF2	100	87.198	Amphiprion_ocellaris
ENSSFOG00015023788	upf2	100	87.276	ENSAPEG00000019084	UPF2	100	87.276	Amphiprion_percula
ENSSFOG00015023788	upf2	100	87.207	ENSATEG00000021677	UPF2	99	87.207	Anabas_testudineus
ENSSFOG00015023788	upf2	100	79.283	ENSAPLG00000010287	UPF2	90	84.224	Anas_platyrhynchos
ENSSFOG00015023788	upf2	100	83.087	ENSACAG00000009259	UPF2	100	81.684	Anolis_carolinensis
ENSSFOG00015023788	upf2	98	76.645	ENSANAG00000028451	UPF2	92	80.431	Aotus_nancymaae
ENSSFOG00015023788	upf2	100	87.354	ENSACLG00000012696	UPF2	100	87.354	Astatotilapia_calliptera
ENSSFOG00015023788	upf2	100	86.885	ENSAMXG00000013700	UPF2	99	87.109	Astyanax_mexicanus
ENSSFOG00015023788	upf2	100	83.242	ENSBTAG00000000288	UPF2	100	81.684	Bos_taurus
ENSSFOG00015023788	upf2	100	82.697	ENSCJAG00000020685	UPF2	100	81.216	Callithrix_jacchus
ENSSFOG00015023788	upf2	100	83.087	ENSCAFG00000004839	UPF2	100	81.684	Canis_familiaris
ENSSFOG00015023788	upf2	95	88.325	ENSCAFG00020005882	UPF2	100	79.703	Canis_lupus_dingo
ENSSFOG00015023788	upf2	100	83.242	ENSCHIG00000020359	UPF2	100	81.684	Capra_hircus
ENSSFOG00015023788	upf2	100	83.087	ENSTSYG00000000935	UPF2	98	88.202	Carlito_syrichta
ENSSFOG00015023788	upf2	92	74.893	ENSCAPG00000016658	UPF2	94	74.785	Cavia_aperea
ENSSFOG00015023788	upf2	99	80.930	ENSCPOG00000008809	UPF2	99	79.622	Cavia_porcellus
ENSSFOG00015023788	upf2	100	76.617	ENSCCAG00000035991	UPF2	100	75.292	Cebus_capucinus
ENSSFOG00015023788	upf2	100	82.788	ENSCATG00000032679	UPF2	100	81.698	Cercocebus_atys
ENSSFOG00015023788	upf2	100	82.995	ENSCLAG00000011434	UPF2	100	81.591	Chinchilla_lanigera
ENSSFOG00015023788	upf2	100	82.788	ENSCSAG00000013372	UPF2	100	81.698	Chlorocebus_sabaeus
ENSSFOG00015023788	upf2	79	89.135	ENSCHOG00000000422	UPF2	81	89.135	Choloepus_hoffmanni
ENSSFOG00015023788	upf2	100	83.007	ENSCPBG00000027823	UPF2	100	83.699	Chrysemys_picta_bellii
ENSSFOG00015023788	upf2	79	49.709	ENSCSAVG00000007772	-	99	48.982	Ciona_savignyi
ENSSFOG00015023788	upf2	100	76.875	ENSCANG00000040396	UPF2	100	76.617	Colobus_angolensis_palliatus
ENSSFOG00015023788	upf2	100	82.619	ENSCGRG00001019347	Upf2	100	81.060	Cricetulus_griseus_chok1gshd
ENSSFOG00015023788	upf2	100	82.619	ENSCGRG00000017993	Upf2	100	81.060	Cricetulus_griseus_crigri
ENSSFOG00015023788	upf2	99	79.062	ENSCSEG00000003520	UPF2	99	78.885	Cynoglossus_semilaevis
ENSSFOG00015023788	upf2	99	85.894	ENSCVAG00000006167	UPF2	100	85.928	Cyprinodon_variegatus
ENSSFOG00015023788	upf2	100	83.164	ENSDNOG00000018160	UPF2	100	81.606	Dasypus_novemcinctus
ENSSFOG00015023788	upf2	100	82.541	ENSDORG00000002478	Upf2	100	80.670	Dipodomys_ordii
ENSSFOG00015023788	upf2	90	36.032	FBgn0029992	Upf2	95	36.042	Drosophila_melanogaster
ENSSFOG00015023788	upf2	72	93.431	ENSETEG00000011583	-	62	93.182	Echinops_telfairi
ENSSFOG00015023788	upf2	64	71.523	ENSEBUG00000012448	-	87	71.523	Eptatretus_burgeri
ENSSFOG00015023788	upf2	100	83.073	ENSEASG00005019274	UPF2	100	81.669	Equus_asinus_asinus
ENSSFOG00015023788	upf2	100	83.073	ENSECAG00000017022	UPF2	100	81.669	Equus_caballus
ENSSFOG00015023788	upf2	82	76.415	ENSEEUG00000007819	UPF2	73	76.730	Erinaceus_europaeus
ENSSFOG00015023788	upf2	100	87.285	ENSELUG00000012014	UPF2	100	88.199	Esox_lucius
ENSSFOG00015023788	upf2	100	87.912	ENSFCAG00000005785	UPF2	100	81.761	Felis_catus
ENSSFOG00015023788	upf2	100	84.022	ENSFALG00000001889	UPF2	98	83.087	Ficedula_albicollis
ENSSFOG00015023788	upf2	100	82.293	ENSFDAG00000014348	UPF2	100	80.499	Fukomys_damarensis
ENSSFOG00015023788	upf2	99	85.872	ENSFHEG00000009826	UPF2	99	86.109	Fundulus_heteroclitus
ENSSFOG00015023788	upf2	91	87.241	ENSGMOG00000005557	UPF2	100	82.697	Gadus_morhua
ENSSFOG00015023788	upf2	100	84.256	ENSGALG00000033772	UPF2	100	83.242	Gallus_gallus
ENSSFOG00015023788	upf2	100	85.792	ENSGAFG00000020867	UPF2	100	85.948	Gambusia_affinis
ENSSFOG00015023788	upf2	100	83.841	ENSGACG00000001080	UPF2	100	85.938	Gasterosteus_aculeatus
ENSSFOG00015023788	upf2	100	83.242	ENSGAGG00000002700	UPF2	100	83.866	Gopherus_agassizii
ENSSFOG00015023788	upf2	100	82.788	ENSGGOG00000001479	UPF2	100	81.698	Gorilla_gorilla
ENSSFOG00015023788	upf2	100	87.198	ENSHBUG00000004249	UPF2	100	87.334	Haplochromis_burtoni
ENSSFOG00015023788	upf2	100	72.713	ENSHGLG00000003822	-	99	72.948	Heterocephalus_glaber_female
ENSSFOG00015023788	upf2	100	82.605	ENSHGLG00000015176	-	100	81.279	Heterocephalus_glaber_female
ENSSFOG00015023788	upf2	100	79.625	ENSHGLG00100010036	UPF2	89	84.848	Heterocephalus_glaber_male
ENSSFOG00015023788	upf2	100	83.826	ENSHCOG00000004025	UPF2	99	83.826	Hippocampus_comes
ENSSFOG00015023788	upf2	100	86.349	ENSIPUG00000015524	UPF2	100	84.321	Ictalurus_punctatus
ENSSFOG00015023788	upf2	100	82.541	ENSSTOG00000013075	UPF2	100	80.982	Ictidomys_tridecemlineatus
ENSSFOG00015023788	upf2	100	81.556	ENSJJAG00000004913	Upf2	100	79.329	Jaculus_jaculus
ENSSFOG00015023788	upf2	99	86.245	ENSKMAG00000001071	UPF2	99	86.482	Kryptolebias_marmoratus
ENSSFOG00015023788	upf2	80	83.024	ENSLBEG00000000728	-	94	83.430	Labrus_bergylta
ENSSFOG00015023788	upf2	100	86.271	ENSLBEG00000016394	-	99	86.739	Labrus_bergylta
ENSSFOG00015023788	upf2	98	77.627	ENSLACG00000015945	UPF2	99	75.663	Latimeria_chalumnae
ENSSFOG00015023788	upf2	99	88.601	ENSLOCG00000015698	UPF2	100	87.736	Lepisosteus_oculatus
ENSSFOG00015023788	upf2	100	82.788	ENSMFAG00000043865	UPF2	100	81.698	Macaca_fascicularis
ENSSFOG00015023788	upf2	100	82.788	ENSMMUG00000008241	UPF2	100	81.698	Macaca_mulatta
ENSSFOG00015023788	upf2	80	82.863	ENSMNEG00000008062	UPF2	99	81.110	Macaca_nemestrina
ENSSFOG00015023788	upf2	100	78.462	ENSMLEG00000036120	UPF2	100	79.641	Mandrillus_leucophaeus
ENSSFOG00015023788	upf2	100	86.651	ENSMAMG00000018276	UPF2	100	86.817	Mastacembelus_armatus
ENSSFOG00015023788	upf2	100	87.354	ENSMZEG00005021595	UPF2	100	87.354	Maylandia_zebra
ENSSFOG00015023788	upf2	99	83.594	ENSMGAG00000004573	UPF2	99	83.125	Meleagris_gallopavo
ENSSFOG00015023788	upf2	100	80.592	ENSMAUG00000016512	Upf2	100	79.034	Mesocricetus_auratus
ENSSFOG00015023788	upf2	95	87.817	ENSMICG00000001716	UPF2	99	87.817	Microcebus_murinus
ENSSFOG00015023788	upf2	100	80.889	ENSMOCG00000008263	Upf2	100	80.811	Microtus_ochrogaster
ENSSFOG00015023788	upf2	100	82.168	ENSMMOG00000006528	UPF2	100	82.288	Mola_mola
ENSSFOG00015023788	upf2	100	83.398	ENSMODG00000016794	UPF2	100	83.632	Monodelphis_domestica
ENSSFOG00015023788	upf2	100	85.121	ENSMALG00000002663	UPF2	100	85.547	Monopterus_albus
ENSSFOG00015023788	upf2	100	82.412	MGP_CAROLIEiJ_G0023157	Upf2	99	84.675	Mus_caroli
ENSSFOG00015023788	upf2	100	82.568	ENSMUSG00000043241	Upf2	99	83.585	Mus_musculus
ENSSFOG00015023788	upf2	100	82.568	MGP_PahariEiJ_G0019217	Upf2	100	83.962	Mus_pahari
ENSSFOG00015023788	upf2	100	82.802	MGP_SPRETEiJ_G0024075	Upf2	100	83.585	Mus_spretus
ENSSFOG00015023788	upf2	100	83.087	ENSMPUG00000001064	UPF2	100	81.839	Mustela_putorius_furo
ENSSFOG00015023788	upf2	100	81.542	ENSMLUG00000000228	UPF2	100	80.901	Myotis_lucifugus
ENSSFOG00015023788	upf2	100	87.354	ENSNBRG00000013629	UPF2	100	87.354	Neolamprologus_brichardi
ENSSFOG00015023788	upf2	100	82.788	ENSNLEG00000012058	UPF2	100	81.698	Nomascus_leucogenys
ENSSFOG00015023788	upf2	73	90.141	ENSOPRG00000006801	-	73	90.141	Ochotona_princeps
ENSSFOG00015023788	upf2	100	82.605	ENSODEG00000001290	UPF2	100	81.357	Octodon_degus
ENSSFOG00015023788	upf2	100	86.963	ENSONIG00000017991	UPF2	100	86.963	Oreochromis_niloticus
ENSSFOG00015023788	upf2	100	80.997	ENSOCUG00000006230	UPF2	100	82.931	Oryctolagus_cuniculus
ENSSFOG00015023788	upf2	100	85.547	ENSORLG00000017189	UPF2	100	85.625	Oryzias_latipes
ENSSFOG00015023788	upf2	100	85.625	ENSORLG00020005969	UPF2	100	85.703	Oryzias_latipes_hni
ENSSFOG00015023788	upf2	100	85.625	ENSORLG00015005713	UPF2	100	85.703	Oryzias_latipes_hsok
ENSSFOG00015023788	upf2	100	81.790	ENSOMEG00000023420	UPF2	98	82.616	Oryzias_melastigma
ENSSFOG00015023788	upf2	100	82.463	ENSOGAG00000005796	UPF2	100	81.372	Otolemur_garnettii
ENSSFOG00015023788	upf2	100	83.113	ENSOARG00000014587	UPF2	100	81.556	Ovis_aries
ENSSFOG00015023788	upf2	100	79.751	ENSPPAG00000037953	UPF2	100	79.251	Pan_paniscus
ENSSFOG00015023788	upf2	100	83.009	ENSPPRG00000000690	UPF2	100	81.761	Panthera_pardus
ENSSFOG00015023788	upf2	100	83.009	ENSPTIG00000008867	UPF2	100	81.761	Panthera_tigris_altaica
ENSSFOG00015023788	upf2	100	82.788	ENSPTRG00000002291	UPF2	100	81.698	Pan_troglodytes
ENSSFOG00015023788	upf2	100	82.866	ENSPANG00000023399	UPF2	100	81.776	Papio_anubis
ENSSFOG00015023788	upf2	100	89.548	ENSPKIG00000025502	UPF2	91	93.718	Paramormyrops_kingsleyae
ENSSFOG00015023788	upf2	59	80.395	ENSPSIG00000015158	UPF2	95	83.289	Pelodiscus_sinensis
ENSSFOG00015023788	upf2	100	83.464	ENSPMGG00000005259	UPF2	100	83.894	Periophthalmus_magnuspinnatus
ENSSFOG00015023788	upf2	93	76.590	ENSPEMG00000015731	Upf2	99	71.387	Peromyscus_maniculatus_bairdii
ENSSFOG00015023788	upf2	100	83.087	ENSPCIG00000006656	UPF2	100	81.995	Phascolarctos_cinereus
ENSSFOG00015023788	upf2	100	86.105	ENSPFOG00000017118	UPF2	100	86.261	Poecilia_formosa
ENSSFOG00015023788	upf2	100	86.105	ENSPLAG00000005094	UPF2	100	86.261	Poecilia_latipinna
ENSSFOG00015023788	upf2	100	86.105	ENSPMEG00000017009	UPF2	100	86.261	Poecilia_mexicana
ENSSFOG00015023788	upf2	100	84.875	ENSPREG00000021880	UPF2	100	85.223	Poecilia_reticulata
ENSSFOG00015023788	upf2	66	84.734	ENSPPYG00000002089	-	100	84.970	Pongo_abelii
ENSSFOG00015023788	upf2	100	71.005	ENSPCAG00000000684	UPF2	86	76.503	Procavia_capensis
ENSSFOG00015023788	upf2	100	79.173	ENSPCOG00000021656	UPF2	100	79.079	Propithecus_coquereli
ENSSFOG00015023788	upf2	100	76.324	ENSPVAG00000017286	UPF2	100	74.766	Pteropus_vampyrus
ENSSFOG00015023788	upf2	100	84.404	ENSPNYG00000017096	UPF2	100	84.832	Pundamilia_nyererei
ENSSFOG00015023788	upf2	100	88.066	ENSPNAG00000009357	UPF2	100	87.598	Pygocentrus_nattereri
ENSSFOG00015023788	upf2	100	78.037	ENSRNOG00000023593	Upf2	100	95.556	Rattus_norvegicus
ENSSFOG00015023788	upf2	100	80.796	ENSRBIG00000037780	UPF2	100	79.219	Rhinopithecus_bieti
ENSSFOG00015023788	upf2	100	82.399	ENSRROG00000043547	UPF2	100	80.841	Rhinopithecus_roxellana
ENSSFOG00015023788	upf2	100	82.151	ENSSBOG00000020012	UPF2	100	80.359	Saimiri_boliviensis_boliviensis
ENSSFOG00015023788	upf2	90	88.581	ENSSMAG00000007637	UPF2	100	84.198	Scophthalmus_maximus
ENSSFOG00015023788	upf2	100	86.807	ENSSDUG00000017244	UPF2	99	86.807	Seriola_dumerili
ENSSFOG00015023788	upf2	100	82.680	ENSSLDG00000016866	UPF2	100	83.346	Seriola_lalandi_dorsalis
ENSSFOG00015023788	upf2	100	80.482	ENSSARG00000008615	UPF2	100	80.638	Sorex_araneus
ENSSFOG00015023788	upf2	100	79.829	ENSSPUG00000014544	UPF2	99	80.265	Sphenodon_punctatus
ENSSFOG00015023788	upf2	69	84.659	ENSSSCG00000011117	-	99	85.000	Sus_scrofa
ENSSFOG00015023788	upf2	99	83.906	ENSTGUG00000002163	-	100	82.891	Taeniopygia_guttata
ENSSFOG00015023788	upf2	100	85.156	ENSTRUG00000007519	UPF2	99	85.078	Takifugu_rubripes
ENSSFOG00015023788	upf2	93	75.063	ENSTBEG00000012679	UPF2	93	73.556	Tupaia_belangeri
ENSSFOG00015023788	upf2	100	83.035	ENSTTRG00000016388	UPF2	100	81.556	Tursiops_truncatus
ENSSFOG00015023788	upf2	87	95.506	ENSUAMG00000023560	UPF2	98	95.506	Ursus_americanus
ENSSFOG00015023788	upf2	100	83.164	ENSUMAG00000012953	UPF2	95	81.761	Ursus_maritimus
ENSSFOG00015023788	upf2	82	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSSFOG00015023788	upf2	100	83.087	ENSVVUG00000006166	UPF2	100	81.684	Vulpes_vulpes
ENSSFOG00015023788	upf2	100	80.375	ENSXETG00000033103	UPF2	100	78.274	Xenopus_tropicalis
ENSSFOG00015023788	upf2	100	85.435	ENSXCOG00000011604	UPF2	100	86.083	Xiphophorus_couchianus
ENSSFOG00015023788	upf2	100	85.948	ENSXMAG00000017209	UPF2	100	86.105	Xiphophorus_maculatus