EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015023869 (Gene tree)
Gene ID: 108926577
Gene Symbol: zgc:152968
Alias: -
Full Name: RNA exonuclease 1 homolog
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 6875 bases
Position: chrKV410855.1:3696225-3703099
Accession: 108926577
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015037500	RNase_T	PF00929.24	2.6e-07	1	1
ENSSFOP00015037498	RNase_T	PF00929.24	3.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015037914	-	3195	-	ENSSFOP00015037500	775 (aa)	-	-
ENSSFOT00015037912	-	3495	XM_018739317	ENSSFOP00015037498	875 (aa)	XP_018594833	-

Gene Model

Click here to download ENSSFOG00015023869's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015023869's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015023869	zgc:152968	50	85.185	ENSAPOG00000005095	zgc:152968	51	85.185	Acanthochromis_polyacanthus
ENSSFOG00015023869	zgc:152968	50	81.481	ENSACIG00000002527	zgc:152968	52	57.115	Amphilophus_citrinellus
ENSSFOG00015023869	zgc:152968	63	61.743	ENSAOCG00000018049	-	50	60.870	Amphiprion_ocellaris
ENSSFOG00015023869	zgc:152968	58	70.588	ENSAPEG00000012559	zgc:152968	60	48.955	Amphiprion_percula
ENSSFOG00015023869	zgc:152968	62	62.136	ENSACLG00000020524	-	51	61.593	Astatotilapia_calliptera
ENSSFOG00015023869	zgc:152968	66	65.777	ENSDARG00000037002	zgc:152968	53	54.824	Danio_rerio
ENSSFOG00015023869	zgc:152968	62	68.689	ENSELUG00000014272	zgc:152968	56	53.644	Esox_lucius
ENSSFOG00015023869	zgc:152968	50	84.615	ENSFHEG00000003641	-	59	47.626	Fundulus_heteroclitus
ENSSFOG00015023869	zgc:152968	61	61.165	ENSGAFG00000016810	-	54	66.818	Gambusia_affinis
ENSSFOG00015023869	zgc:152968	59	61.299	ENSHBUG00000007524	-	60	46.241	Haplochromis_burtoni
ENSSFOG00015023869	zgc:152968	70	56.863	ENSIPUG00000004633	zgc:152968	58	65.450	Ictalurus_punctatus
ENSSFOG00015023869	zgc:152968	58	63.504	ENSLBEG00000026485	zgc:152968	56	54.328	Labrus_bergylta
ENSSFOG00015023869	zgc:152968	62	56.388	ENSMAMG00000005920	-	55	48.593	Mastacembelus_armatus
ENSSFOG00015023869	zgc:152968	62	61.893	ENSMZEG00005013783	-	50	60.656	Maylandia_zebra
ENSSFOG00015023869	zgc:152968	51	85.714	ENSMMOG00000018072	zgc:152968	93	60.364	Mola_mola
ENSSFOG00015023869	zgc:152968	66	62.379	ENSONIG00000016897	-	61	51.543	Oreochromis_niloticus
ENSSFOG00015023869	zgc:152968	62	61.244	ENSORLG00020012504	-	64	47.877	Oryzias_latipes_hni
ENSSFOG00015023869	zgc:152968	68	51.163	ENSOMEG00000008840	-	62	52.622	Oryzias_melastigma
ENSSFOG00015023869	zgc:152968	62	61.408	ENSPFOG00000006104	-	64	47.059	Poecilia_formosa
ENSSFOG00015023869	zgc:152968	61	61.408	ENSPLAG00000005034	-	62	47.120	Poecilia_latipinna
ENSSFOG00015023869	zgc:152968	62	61.408	ENSPMEG00000018012	-	60	47.128	Poecilia_mexicana
ENSSFOG00015023869	zgc:152968	62	60.922	ENSPREG00000007481	-	61	48.848	Poecilia_reticulata
ENSSFOG00015023869	zgc:152968	62	63.070	ENSSMAG00000008149	-	58	49.857	Scophthalmus_maximus
ENSSFOG00015023869	zgc:152968	62	63.158	ENSSDUG00000022323	-	55	53.251	Seriola_dumerili
ENSSFOG00015023869	zgc:152968	56	95.833	ENSSLDG00000018799	zgc:152968	53	51.901	Seriola_lalandi_dorsalis
ENSSFOG00015023869	zgc:152968	59	87.500	ENSSPAG00000007632	-	57	49.597	Stegastes_partitus
ENSSFOG00015023869	zgc:152968	63	63.260	ENSTRUG00000025441	zgc:152968	60	49.926	Takifugu_rubripes
ENSSFOG00015023869	zgc:152968	61	59.951	ENSXMAG00000026483	-	60	46.465	Xiphophorus_maculatus