EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015024175 (Gene tree)
Gene ID: 108926799
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 15550 bases
Position: chrKV410858.1:657261-672810
Accession: 108926799
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015037981	EST1	PF10374.9	1.9e-23	1	1
ENSSFOP00015037980	EST1	PF10374.9	2.1e-23	1	1
ENSSFOP00015037981	EST1_DNA_bind	PF10373.9	3.9e-40	1	1
ENSSFOP00015037980	EST1_DNA_bind	PF10373.9	6e-40	1	1
ENSSFOP00015037980	PIN_4	PF13638.6	1.3e-06	1	1
ENSSFOP00015037981	PIN_4	PF13638.6	1.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015038400	-	3030	-	ENSSFOP00015037981	1009 (aa)	-	-
ENSSFOT00015038399	-	5137	XM_018739747	ENSSFOP00015037980	1096 (aa)	XP_018595263	A0A1W4YUN6

Gene Model

Click here to download ENSSFOG00015024175's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015024175's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015024175	smg5	99	66.439	ENSG00000198952	SMG5	99	66.537	Homo_sapiens
ENSSFOG00015024175	smg5	99	80.547	ENSAPOG00000019690	smg5	99	80.176	Acanthochromis_polyacanthus
ENSSFOG00015024175	smg5	98	65.572	ENSAMEG00000014458	SMG5	100	64.945	Ailuropoda_melanoleuca
ENSSFOG00015024175	smg5	100	79.364	ENSACIG00000001353	smg5	100	79.826	Amphilophus_citrinellus
ENSSFOG00015024175	smg5	100	76.720	ENSAOCG00000019483	smg5	100	77.377	Amphiprion_ocellaris
ENSSFOG00015024175	smg5	98	80.179	ENSAPEG00000022949	smg5	98	80.238	Amphiprion_percula
ENSSFOG00015024175	smg5	100	79.576	ENSATEG00000005348	smg5	100	80.019	Anabas_testudineus
ENSSFOG00015024175	smg5	98	66.731	ENSAPLG00000010263	SMG5	100	66.602	Anas_platyrhynchos
ENSSFOG00015024175	smg5	99	65.984	ENSANAG00000032899	SMG5	99	65.574	Aotus_nancymaae
ENSSFOG00015024175	smg5	100	78.551	ENSACLG00000009311	smg5	100	79.324	Astatotilapia_calliptera
ENSSFOG00015024175	smg5	100	78.591	ENSAMXG00000024616	smg5	100	79.047	Astyanax_mexicanus
ENSSFOG00015024175	smg5	99	66.343	ENSBTAG00000009435	SMG5	99	66.538	Bos_taurus
ENSSFOG00015024175	smg5	97	43.902	ENSBTAG00000021747	-	92	50.985	Bos_taurus
ENSSFOG00015024175	smg5	99	65.887	ENSCJAG00000005684	SMG5	99	65.477	Callithrix_jacchus
ENSSFOG00015024175	smg5	99	66.372	ENSCAFG00000016839	SMG5	99	66.470	Canis_familiaris
ENSSFOG00015024175	smg5	99	66.372	ENSCAFG00020006061	SMG5	99	66.470	Canis_lupus_dingo
ENSSFOG00015024175	smg5	99	39.546	ENSCHIG00000006323	-	93	51.358	Capra_hircus
ENSSFOG00015024175	smg5	99	66.146	ENSCHIG00000007709	SMG5	99	66.342	Capra_hircus
ENSSFOG00015024175	smg5	99	65.823	ENSTSYG00000004099	SMG5	99	65.209	Carlito_syrichta
ENSSFOG00015024175	smg5	95	50.968	ENSCAPG00000003631	SMG5	100	50.825	Cavia_aperea
ENSSFOG00015024175	smg5	99	66.248	ENSCPOG00000015696	SMG5	99	65.700	Cavia_porcellus
ENSSFOG00015024175	smg5	99	66.146	ENSCCAG00000027409	SMG5	99	65.444	Cebus_capucinus
ENSSFOG00015024175	smg5	99	66.504	ENSCATG00000030539	SMG5	99	66.245	Cercocebus_atys
ENSSFOG00015024175	smg5	99	65.863	ENSCLAG00000003983	SMG5	99	66.087	Chinchilla_lanigera
ENSSFOG00015024175	smg5	99	66.504	ENSCSAG00000002120	SMG5	99	66.245	Chlorocebus_sabaeus
ENSSFOG00015024175	smg5	53	74.729	ENSCHOG00000008741	-	57	74.729	Choloepus_hoffmanni
ENSSFOG00015024175	smg5	93	64.108	ENSCPBG00000025848	SMG5	100	65.895	Chrysemys_picta_bellii
ENSSFOG00015024175	smg5	93	33.811	ENSCING00000008706	-	99	33.197	Ciona_intestinalis
ENSSFOG00015024175	smg5	99	63.521	ENSCANG00000029208	SMG5	99	62.682	Colobus_angolensis_palliatus
ENSSFOG00015024175	smg5	99	65.571	ENSCGRG00001006336	Smg5	99	66.084	Cricetulus_griseus_chok1gshd
ENSSFOG00015024175	smg5	98	65.354	ENSCGRG00000005111	Smg5	100	65.842	Cricetulus_griseus_crigri
ENSSFOG00015024175	smg5	99	76.878	ENSCSEG00000014220	smg5	99	76.990	Cynoglossus_semilaevis
ENSSFOG00015024175	smg5	100	71.650	ENSCVAG00000000529	smg5	100	71.996	Cyprinodon_variegatus
ENSSFOG00015024175	smg5	100	79.422	ENSDARG00000041481	smg5	100	79.586	Danio_rerio
ENSSFOG00015024175	smg5	99	63.204	ENSDNOG00000000051	SMG5	99	63.424	Dasypus_novemcinctus
ENSSFOG00015024175	smg5	92	31.781	ENSDNOG00000039862	-	90	39.726	Dasypus_novemcinctus
ENSSFOG00015024175	smg5	99	66.248	ENSDORG00000010382	Smg5	99	65.861	Dipodomys_ordii
ENSSFOG00015024175	smg5	75	83.495	ENSETEG00000010336	SMG5	82	83.495	Echinops_telfairi
ENSSFOG00015024175	smg5	90	45.955	ENSEBUG00000003739	smg5	98	44.909	Eptatretus_burgeri
ENSSFOG00015024175	smg5	99	66.146	ENSEASG00005019122	SMG5	99	65.370	Equus_asinus_asinus
ENSSFOG00015024175	smg5	99	65.854	ENSECAG00000001389	SMG5	99	65.370	Equus_caballus
ENSSFOG00015024175	smg5	72	79.023	ENSEEUG00000012690	SMG5	75	79.023	Erinaceus_europaeus
ENSSFOG00015024175	smg5	99	80.136	ENSELUG00000012585	smg5	99	78.952	Esox_lucius
ENSSFOG00015024175	smg5	99	65.820	ENSFCAG00000011783	SMG5	99	66.306	Felis_catus
ENSSFOG00015024175	smg5	57	69.610	ENSFALG00000001166	-	96	69.270	Ficedula_albicollis
ENSSFOG00015024175	smg5	98	65.647	ENSFDAG00000017388	SMG5	100	65.875	Fukomys_damarensis
ENSSFOG00015024175	smg5	98	69.399	ENSFHEG00000013939	smg5	98	73.271	Fundulus_heteroclitus
ENSSFOG00015024175	smg5	100	73.776	ENSGMOG00000007310	smg5	100	74.433	Gadus_morhua
ENSSFOG00015024175	smg5	99	66.922	ENSGALG00000029918	-	99	66.571	Gallus_gallus
ENSSFOG00015024175	smg5	92	84.665	ENSGAFG00000021691	smg5	99	84.665	Gambusia_affinis
ENSSFOG00015024175	smg5	100	74.824	ENSGACG00000013142	smg5	100	74.802	Gasterosteus_aculeatus
ENSSFOG00015024175	smg5	99	66.261	ENSGAGG00000016131	SMG5	99	66.825	Gopherus_agassizii
ENSSFOG00015024175	smg5	99	65.984	ENSGGOG00000010932	SMG5	99	65.574	Gorilla_gorilla
ENSSFOG00015024175	smg5	100	78.613	ENSHBUG00000008654	smg5	100	79.287	Haplochromis_burtoni
ENSSFOG00015024175	smg5	99	65.891	ENSHGLG00000019152	SMG5	99	65.861	Heterocephalus_glaber_female
ENSSFOG00015024175	smg5	89	66.738	ENSHGLG00100015948	SMG5	99	66.702	Heterocephalus_glaber_male
ENSSFOG00015024175	smg5	87	79.087	ENSHCOG00000010229	smg5	94	78.846	Hippocampus_comes
ENSSFOG00015024175	smg5	100	78.139	ENSIPUG00000006624	Smg5	100	78.410	Ictalurus_punctatus
ENSSFOG00015024175	smg5	99	66.634	ENSSTOG00000001780	SMG5	99	66.829	Ictidomys_tridecemlineatus
ENSSFOG00015024175	smg5	99	65.537	ENSJJAG00000022763	Smg5	99	65.634	Jaculus_jaculus
ENSSFOG00015024175	smg5	100	76.169	ENSKMAG00000014586	smg5	100	75.599	Kryptolebias_marmoratus
ENSSFOG00015024175	smg5	100	77.992	ENSLBEG00000002145	smg5	100	77.788	Labrus_bergylta
ENSSFOG00015024175	smg5	99	61.349	ENSLACG00000010521	SMG5	99	60.531	Latimeria_chalumnae
ENSSFOG00015024175	smg5	100	70.833	ENSLOCG00000008380	smg5	99	74.865	Lepisosteus_oculatus
ENSSFOG00015024175	smg5	99	65.818	ENSLAFG00000006241	SMG5	99	65.430	Loxodonta_africana
ENSSFOG00015024175	smg5	99	66.504	ENSMFAG00000045357	SMG5	99	66.245	Macaca_fascicularis
ENSSFOG00015024175	smg5	93	78.043	ENSMMUG00000000090	SMG5	99	66.765	Macaca_mulatta
ENSSFOG00015024175	smg5	99	66.407	ENSMNEG00000044425	SMG5	99	66.148	Macaca_nemestrina
ENSSFOG00015024175	smg5	99	61.463	ENSMLEG00000041192	SMG5	99	60.526	Mandrillus_leucophaeus
ENSSFOG00015024175	smg5	100	76.549	ENSMAMG00000010683	smg5	100	75.776	Mastacembelus_armatus
ENSSFOG00015024175	smg5	62	72.965	ENSMZEG00005016543	smg5	100	72.824	Maylandia_zebra
ENSSFOG00015024175	smg5	100	74.663	ENSMZEG00005015815	smg5	100	74.856	Maylandia_zebra
ENSSFOG00015024175	smg5	99	66.699	ENSMAUG00000010381	Smg5	99	66.310	Mesocricetus_auratus
ENSSFOG00015024175	smg5	56	41.567	ENSMAUG00000000043	-	68	51.562	Mesocricetus_auratus
ENSSFOG00015024175	smg5	99	66.178	ENSMICG00000002257	SMG5	99	66.472	Microcebus_murinus
ENSSFOG00015024175	smg5	99	65.514	ENSMOCG00000016590	Smg5	99	65.889	Microtus_ochrogaster
ENSSFOG00015024175	smg5	56	43.056	ENSMOCG00000008423	-	68	51.256	Microtus_ochrogaster
ENSSFOG00015024175	smg5	100	72.743	ENSMMOG00000017199	smg5	100	71.880	Mola_mola
ENSSFOG00015024175	smg5	97	30.732	ENSMODG00000004511	-	78	36.364	Monodelphis_domestica
ENSSFOG00015024175	smg5	77	35.065	ENSMODG00000010675	-	91	35.233	Monodelphis_domestica
ENSSFOG00015024175	smg5	87	67.188	ENSMODG00000016901	SMG5	98	66.853	Monodelphis_domestica
ENSSFOG00015024175	smg5	78	35.000	ENSMODG00000004532	-	87	34.988	Monodelphis_domestica
ENSSFOG00015024175	smg5	74	34.417	ENSMODG00000004735	-	85	34.501	Monodelphis_domestica
ENSSFOG00015024175	smg5	100	76.372	ENSMALG00000010375	smg5	94	84.954	Monopterus_albus
ENSSFOG00015024175	smg5	99	65.667	MGP_CAROLIEiJ_G0025163	Smg5	100	87.151	Mus_caroli
ENSSFOG00015024175	smg5	99	65.764	ENSMUSG00000001415	Smg5	99	87.151	Mus_musculus
ENSSFOG00015024175	smg5	99	65.347	MGP_PahariEiJ_G0026606	Smg5	100	87.709	Mus_pahari
ENSSFOG00015024175	smg5	99	65.667	MGP_SPRETEiJ_G0026104	Smg5	100	87.151	Mus_spretus
ENSSFOG00015024175	smg5	93	64.865	ENSMPUG00000004546	SMG5	96	75.833	Mustela_putorius_furo
ENSSFOG00015024175	smg5	99	64.666	ENSMLUG00000008518	SMG5	99	65.373	Myotis_lucifugus
ENSSFOG00015024175	smg5	99	65.789	ENSNGAG00000020706	Smg5	99	66.797	Nannospalax_galili
ENSSFOG00015024175	smg5	83	48.694	ENSNGAG00000012101	-	94	48.694	Nannospalax_galili
ENSSFOG00015024175	smg5	97	75.177	ENSNBRG00000004332	smg5	98	75.709	Neolamprologus_brichardi
ENSSFOG00015024175	smg5	99	66.244	ENSNLEG00000012439	SMG5	96	76.852	Nomascus_leucogenys
ENSSFOG00015024175	smg5	99	65.659	ENSMEUG00000012834	SMG5	99	65.564	Notamacropus_eugenii
ENSSFOG00015024175	smg5	99	65.474	ENSOPRG00000009152	SMG5	99	65.828	Ochotona_princeps
ENSSFOG00015024175	smg5	99	66.442	ENSODEG00000012237	SMG5	99	66.667	Octodon_degus
ENSSFOG00015024175	smg5	100	76.726	ENSONIG00000008632	smg5	100	77.650	Oreochromis_niloticus
ENSSFOG00015024175	smg5	98	65.808	ENSOCUG00000012886	SMG5	100	66.534	Oryctolagus_cuniculus
ENSSFOG00015024175	smg5	91	34.800	ENSOCUG00000023338	-	92	45.301	Oryctolagus_cuniculus
ENSSFOG00015024175	smg5	100	75.067	ENSORLG00000016239	smg5	100	76.131	Oryzias_latipes
ENSSFOG00015024175	smg5	100	75.752	ENSORLG00020013127	smg5	100	76.916	Oryzias_latipes_hni
ENSSFOG00015024175	smg5	100	76.015	ENSORLG00015019014	smg5	100	77.264	Oryzias_latipes_hsok
ENSSFOG00015024175	smg5	83	74.867	ENSOMEG00000021330	smg5	92	75.290	Oryzias_melastigma
ENSSFOG00015024175	smg5	99	65.656	ENSOGAG00000004966	SMG5	99	65.430	Otolemur_garnettii
ENSSFOG00015024175	smg5	99	39.648	ENSOARG00000011963	-	93	51.566	Ovis_aries
ENSSFOG00015024175	smg5	99	66.049	ENSOARG00000005778	SMG5	99	66.245	Ovis_aries
ENSSFOG00015024175	smg5	99	66.341	ENSPPAG00000011996	SMG5	99	66.440	Pan_paniscus
ENSSFOG00015024175	smg5	98	65.572	ENSPPRG00000011901	SMG5	100	66.066	Panthera_pardus
ENSSFOG00015024175	smg5	97	62.602	ENSPTIG00000007892	SMG5	98	62.195	Panthera_tigris_altaica
ENSSFOG00015024175	smg5	99	66.341	ENSPTRG00000049282	-	99	66.440	Pan_troglodytes
ENSSFOG00015024175	smg5	99	66.341	ENSPTRG00000023925	SMG5	99	66.440	Pan_troglodytes
ENSSFOG00015024175	smg5	99	66.504	ENSPANG00000011201	SMG5	99	66.245	Papio_anubis
ENSSFOG00015024175	smg5	100	83.515	ENSPKIG00000009402	smg5	100	83.424	Paramormyrops_kingsleyae
ENSSFOG00015024175	smg5	98	67.949	ENSPSIG00000015198	SMG5	100	67.653	Pelodiscus_sinensis
ENSSFOG00015024175	smg5	100	69.759	ENSPMGG00000010465	smg5	100	69.534	Periophthalmus_magnuspinnatus
ENSSFOG00015024175	smg5	99	65.734	ENSPEMG00000001819	Smg5	99	66.310	Peromyscus_maniculatus_bairdii
ENSSFOG00015024175	smg5	58	41.246	ENSPEMG00000010022	-	68	50.503	Peromyscus_maniculatus_bairdii
ENSSFOG00015024175	smg5	85	63.591	ENSPMAG00000000410	smg5	92	62.927	Petromyzon_marinus
ENSSFOG00015024175	smg5	99	66.993	ENSPCIG00000018938	SMG5	99	66.179	Phascolarctos_cinereus
ENSSFOG00015024175	smg5	100	76.288	ENSPFOG00000010191	smg5	100	76.821	Poecilia_formosa
ENSSFOG00015024175	smg5	100	75.685	ENSPLAG00000009332	smg5	100	76.643	Poecilia_latipinna
ENSSFOG00015024175	smg5	100	77.885	ENSPMEG00000014105	smg5	99	78.194	Poecilia_mexicana
ENSSFOG00015024175	smg5	100	76.068	ENSPREG00000017713	smg5	100	76.732	Poecilia_reticulata
ENSSFOG00015024175	smg5	99	66.439	ENSPPYG00000000723	SMG5	99	66.537	Pongo_abelii
ENSSFOG00015024175	smg5	77	80.000	ENSPCAG00000008412	SMG5	81	80.000	Procavia_capensis
ENSSFOG00015024175	smg5	99	66.080	ENSPCOG00000004741	SMG5	99	66.374	Propithecus_coquereli
ENSSFOG00015024175	smg5	93	65.721	ENSPVAG00000016748	SMG5	96	65.046	Pteropus_vampyrus
ENSSFOG00015024175	smg5	100	75.814	ENSPNYG00000013397	smg5	100	76.119	Pundamilia_nyererei
ENSSFOG00015024175	smg5	100	79.276	ENSPNAG00000028363	smg5	100	79.550	Pygocentrus_nattereri
ENSSFOG00015024175	smg5	99	65.474	ENSRNOG00000019590	Smg5	99	65.986	Rattus_norvegicus
ENSSFOG00015024175	smg5	99	66.504	ENSRBIG00000027428	SMG5	99	66.245	Rhinopithecus_bieti
ENSSFOG00015024175	smg5	99	66.407	ENSRROG00000030035	SMG5	99	66.148	Rhinopithecus_roxellana
ENSSFOG00015024175	smg5	99	66.244	ENSSBOG00000033339	SMG5	99	65.637	Saimiri_boliviensis_boliviensis
ENSSFOG00015024175	smg5	75	36.616	ENSSHAG00000000561	-	88	36.616	Sarcophilus_harrisii
ENSSFOG00015024175	smg5	98	66.238	ENSSHAG00000014163	SMG5	100	65.743	Sarcophilus_harrisii
ENSSFOG00015024175	smg5	79	41.549	ENSSHAG00000009572	-	82	41.452	Sarcophilus_harrisii
ENSSFOG00015024175	smg5	55	36.869	ENSSHAG00000000935	-	88	35.765	Sarcophilus_harrisii
ENSSFOG00015024175	smg5	100	76.752	ENSSMAG00000013059	smg5	100	76.011	Scophthalmus_maximus
ENSSFOG00015024175	smg5	100	76.011	ENSSDUG00000007122	smg5	100	77.612	Seriola_dumerili
ENSSFOG00015024175	smg5	100	76.439	ENSSLDG00000011418	smg5	100	77.208	Seriola_lalandi_dorsalis
ENSSFOG00015024175	smg5	90	59.697	ENSSARG00000012484	SMG5	94	69.784	Sorex_araneus
ENSSFOG00015024175	smg5	93	64.854	ENSSPUG00000002260	SMG5	100	65.161	Sphenodon_punctatus
ENSSFOG00015024175	smg5	99	78.244	ENSSPAG00000014266	smg5	100	77.680	Stegastes_partitus
ENSSFOG00015024175	smg5	99	66.244	ENSSSCG00000006490	-	100	65.699	Sus_scrofa
ENSSFOG00015024175	smg5	99	51.775	ENSSSCG00000039308	-	99	51.768	Sus_scrofa
ENSSFOG00015024175	smg5	99	68.493	ENSTGUG00000003748	-	99	68.222	Taeniopygia_guttata
ENSSFOG00015024175	smg5	99	75.096	ENSTRUG00000012580	smg5	99	75.912	Takifugu_rubripes
ENSSFOG00015024175	smg5	99	75.865	ENSTNIG00000010303	smg5	99	76.255	Tetraodon_nigroviridis
ENSSFOG00015024175	smg5	57	82.266	ENSTBEG00000002777	SMG5	59	82.266	Tupaia_belangeri
ENSSFOG00015024175	smg5	99	62.146	ENSTTRG00000001401	SMG5	99	62.451	Tursiops_truncatus
ENSSFOG00015024175	smg5	99	66.043	ENSUAMG00000013721	SMG5	95	77.566	Ursus_americanus
ENSSFOG00015024175	smg5	92	74.447	ENSUMAG00000018041	SMG5	98	74.217	Ursus_maritimus
ENSSFOG00015024175	smg5	92	70.297	ENSVPAG00000009446	SMG5	99	58.151	Vicugna_pacos
ENSSFOG00015024175	smg5	99	66.372	ENSVVUG00000005887	SMG5	99	66.568	Vulpes_vulpes
ENSSFOG00015024175	smg5	79	54.795	ENSXETG00000033791	SMG5	99	57.463	Xenopus_tropicalis
ENSSFOG00015024175	smg5	86	85.405	ENSXCOG00000004379	smg5	99	86.264	Xiphophorus_couchianus
ENSSFOG00015024175	smg5	100	77.176	ENSXMAG00000013499	smg5	100	76.288	Xiphophorus_maculatus