EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015024211 (Gene tree)
Gene ID: 108926832
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Minus strand
Length: 12759 bases
Position: chrKV410860.1:147613-160371
Accession: 108926832
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015038048	XRN_N	PF03159.18	2.2e-95	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015038467	-	4917	XM_018739793	ENSSFOP00015038048	1638 (aa)	XP_018595309	-

Gene Model

Click here to download ENSSFOG00015024211's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03008	Ribosome biogenesis in eukaryotes	KEGG
sfm03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015024211's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015024211	xrn1	100	61.197	ENSG00000114127	XRN1	96	95.146	Homo_sapiens
ENSSFOG00015024211	xrn1	96	79.414	ENSAPOG00000000622	xrn1	97	79.414	Acanthochromis_polyacanthus
ENSSFOG00015024211	xrn1	97	62.043	ENSAMEG00000012538	XRN1	100	61.044	Ailuropoda_melanoleuca
ENSSFOG00015024211	xrn1	95	77.887	ENSACIG00000001057	xrn1	97	77.887	Amphilophus_citrinellus
ENSSFOG00015024211	xrn1	100	68.911	ENSAOCG00000014097	xrn1	95	74.037	Amphiprion_ocellaris
ENSSFOG00015024211	xrn1	100	68.342	ENSAPEG00000006620	xrn1	98	70.906	Amphiprion_percula
ENSSFOG00015024211	xrn1	100	66.128	ENSATEG00000009752	xrn1	100	65.788	Anabas_testudineus
ENSSFOG00015024211	xrn1	98	61.337	ENSAPLG00000004905	XRN1	100	61.047	Anas_platyrhynchos
ENSSFOG00015024211	xrn1	100	59.091	ENSACAG00000004985	XRN1	100	59.091	Anolis_carolinensis
ENSSFOG00015024211	xrn1	97	62.981	ENSANAG00000029013	XRN1	99	73.940	Aotus_nancymaae
ENSSFOG00015024211	xrn1	100	66.822	ENSACLG00000004806	xrn1	99	66.822	Astatotilapia_calliptera
ENSSFOG00015024211	xrn1	100	70.184	ENSAMXG00000019370	xrn1	95	98.058	Astyanax_mexicanus
ENSSFOG00015024211	xrn1	100	61.200	ENSBTAG00000011524	XRN1	100	61.292	Bos_taurus
ENSSFOG00015024211	xrn1	72	38.372	WBGene00012730	xrn-1	79	37.017	Caenorhabditis_elegans
ENSSFOG00015024211	xrn1	97	62.545	ENSCJAG00000001872	XRN1	99	62.350	Callithrix_jacchus
ENSSFOG00015024211	xrn1	97	62.500	ENSCAFG00000007783	XRN1	100	61.517	Canis_familiaris
ENSSFOG00015024211	xrn1	97	62.441	ENSCAFG00020009120	XRN1	99	76.789	Canis_lupus_dingo
ENSSFOG00015024211	xrn1	99	61.552	ENSCHIG00000019192	XRN1	99	61.645	Capra_hircus
ENSSFOG00015024211	xrn1	100	61.127	ENSTSYG00000002705	XRN1	100	60.967	Carlito_syrichta
ENSSFOG00015024211	xrn1	57	61.983	ENSCAPG00000004604	-	99	61.653	Cavia_aperea
ENSSFOG00015024211	xrn1	100	61.419	ENSCCAG00000034800	XRN1	99	78.696	Cebus_capucinus
ENSSFOG00015024211	xrn1	97	63.199	ENSCATG00000041794	XRN1	100	61.396	Cercocebus_atys
ENSSFOG00015024211	xrn1	100	61.499	ENSCLAG00000001451	XRN1	99	78.378	Chinchilla_lanigera
ENSSFOG00015024211	xrn1	97	62.768	ENSCSAG00000011265	XRN1	100	60.997	Chlorocebus_sabaeus
ENSSFOG00015024211	xrn1	52	94.805	ENSCHOG00000013961	-	52	94.805	Choloepus_hoffmanni
ENSSFOG00015024211	xrn1	71	51.057	ENSCSAVG00000008584	-	93	50.554	Ciona_savignyi
ENSSFOG00015024211	xrn1	97	62.959	ENSCANG00000037495	XRN1	99	78.537	Colobus_angolensis_palliatus
ENSSFOG00015024211	xrn1	96	63.123	ENSCGRG00001019411	Xrn1	99	78.696	Cricetulus_griseus_chok1gshd
ENSSFOG00015024211	xrn1	96	63.123	ENSCGRG00000012464	Xrn1	99	78.696	Cricetulus_griseus_crigri
ENSSFOG00015024211	xrn1	100	62.273	ENSCSEG00000021285	xrn1	94	98.077	Cynoglossus_semilaevis
ENSSFOG00015024211	xrn1	69	78.242	ENSCVAG00000013089	xrn1	99	78.330	Cyprinodon_variegatus
ENSSFOG00015024211	xrn1	100	70.671	ENSDARG00000091652	xrn1	98	83.721	Danio_rerio
ENSSFOG00015024211	xrn1	97	62.087	ENSDORG00000013833	Xrn1	100	61.178	Dipodomys_ordii
ENSSFOG00015024211	xrn1	71	42.350	FBgn0020261	pcm	71	42.519	Drosophila_melanogaster
ENSSFOG00015024211	xrn1	85	72.973	ENSETEG00000003978	XRN1	88	73.387	Echinops_telfairi
ENSSFOG00015024211	xrn1	97	63.051	ENSEASG00005002687	XRN1	99	78.696	Equus_asinus_asinus
ENSSFOG00015024211	xrn1	97	62.418	ENSECAG00000008301	XRN1	100	61.512	Equus_caballus
ENSSFOG00015024211	xrn1	92	66.797	ENSEEUG00000011323	XRN1	86	66.797	Erinaceus_europaeus
ENSSFOG00015024211	xrn1	100	69.129	ENSELUG00000000169	xrn1	100	69.151	Esox_lucius
ENSSFOG00015024211	xrn1	96	59.300	ENSFCAG00000027589	XRN1	99	80.044	Felis_catus
ENSSFOG00015024211	xrn1	99	72.382	ENSFALG00000007021	XRN1	92	72.382	Ficedula_albicollis
ENSSFOG00015024211	xrn1	97	62.954	ENSFDAG00000020494	XRN1	99	78.378	Fukomys_damarensis
ENSSFOG00015024211	xrn1	86	72.915	ENSGMOG00000006396	xrn1	84	73.185	Gadus_morhua
ENSSFOG00015024211	xrn1	100	61.218	ENSGALG00000002706	XRN1	100	60.879	Gallus_gallus
ENSSFOG00015024211	xrn1	100	65.879	ENSGACG00000014328	xrn1	100	66.340	Gasterosteus_aculeatus
ENSSFOG00015024211	xrn1	95	62.869	ENSGAGG00000017535	XRN1	99	62.749	Gopherus_agassizii
ENSSFOG00015024211	xrn1	100	61.547	ENSGGOG00000008047	XRN1	100	61.130	Gorilla_gorilla
ENSSFOG00015024211	xrn1	100	66.470	ENSHBUG00000005908	xrn1	95	77.004	Haplochromis_burtoni
ENSSFOG00015024211	xrn1	100	61.556	ENSHGLG00000014476	XRN1	99	78.378	Heterocephalus_glaber_female
ENSSFOG00015024211	xrn1	100	61.556	ENSHGLG00100015130	XRN1	99	78.378	Heterocephalus_glaber_male
ENSSFOG00015024211	xrn1	95	77.451	ENSHCOG00000014062	xrn1	98	77.317	Hippocampus_comes
ENSSFOG00015024211	xrn1	100	70.714	ENSIPUG00000015229	xrn1	100	70.707	Ictalurus_punctatus
ENSSFOG00015024211	xrn1	96	63.054	ENSSTOG00000013552	XRN1	99	78.378	Ictidomys_tridecemlineatus
ENSSFOG00015024211	xrn1	98	60.597	ENSJJAG00000010863	Xrn1	99	77.280	Jaculus_jaculus
ENSSFOG00015024211	xrn1	100	66.012	ENSKMAG00000021356	xrn1	95	78.992	Kryptolebias_marmoratus
ENSSFOG00015024211	xrn1	100	67.349	ENSLBEG00000018656	xrn1	97	99.029	Labrus_bergylta
ENSSFOG00015024211	xrn1	100	63.224	ENSLACG00000009020	XRN1	100	63.396	Latimeria_chalumnae
ENSSFOG00015024211	xrn1	100	67.720	ENSLOCG00000007944	xrn1	100	67.720	Lepisosteus_oculatus
ENSSFOG00015024211	xrn1	64	73.958	ENSLAFG00000015426	XRN1	100	73.807	Loxodonta_africana
ENSSFOG00015024211	xrn1	97	63.259	ENSMFAG00000032599	XRN1	100	61.454	Macaca_fascicularis
ENSSFOG00015024211	xrn1	97	63.259	ENSMMUG00000014038	XRN1	100	61.454	Macaca_mulatta
ENSSFOG00015024211	xrn1	97	63.079	ENSMNEG00000034217	XRN1	100	61.396	Macaca_nemestrina
ENSSFOG00015024211	xrn1	100	67.226	ENSMAMG00000013219	xrn1	98	76.355	Mastacembelus_armatus
ENSSFOG00015024211	xrn1	100	66.764	ENSMZEG00005015099	xrn1	99	66.764	Maylandia_zebra
ENSSFOG00015024211	xrn1	99	60.186	ENSMGAG00000006333	XRN1	100	59.837	Meleagris_gallopavo
ENSSFOG00015024211	xrn1	98	62.434	ENSMICG00000048948	XRN1	96	95.146	Microcebus_murinus
ENSSFOG00015024211	xrn1	59	79.014	ENSMOCG00000008665	Xrn1	99	78.855	Microtus_ochrogaster
ENSSFOG00015024211	xrn1	100	60.892	ENSMODG00000021236	XRN1	100	61.178	Monodelphis_domestica
ENSSFOG00015024211	xrn1	100	65.714	ENSMALG00000004098	xrn1	100	65.855	Monopterus_albus
ENSSFOG00015024211	xrn1	100	57.283	MGP_CAROLIEiJ_G0032535	Xrn1	100	92.500	Mus_caroli
ENSSFOG00015024211	xrn1	100	61.609	ENSMUSG00000032410	Xrn1	100	92.500	Mus_musculus
ENSSFOG00015024211	xrn1	100	61.419	MGP_PahariEiJ_G0015404	Xrn1	100	92.500	Mus_pahari
ENSSFOG00015024211	xrn1	100	61.552	MGP_SPRETEiJ_G0033678	Xrn1	100	92.500	Mus_spretus
ENSSFOG00015024211	xrn1	97	62.352	ENSMPUG00000012040	XRN1	100	61.416	Mustela_putorius_furo
ENSSFOG00015024211	xrn1	100	61.552	ENSMLUG00000016885	XRN1	100	61.494	Myotis_lucifugus
ENSSFOG00015024211	xrn1	59	74.682	ENSNGAG00000023964	Xrn1	99	74.682	Nannospalax_galili
ENSSFOG00015024211	xrn1	97	62.959	ENSNLEG00000004726	XRN1	100	61.166	Nomascus_leucogenys
ENSSFOG00015024211	xrn1	63	95.876	ENSMEUG00000014473	-	63	96.117	Notamacropus_eugenii
ENSSFOG00015024211	xrn1	78	68.269	ENSOPRG00000007337	-	70	72.993	Ochotona_princeps
ENSSFOG00015024211	xrn1	100	66.071	ENSONIG00000016673	xrn1	99	70.623	Oreochromis_niloticus
ENSSFOG00015024211	xrn1	90	68.268	ENSOANG00000006735	XRN1	93	68.182	Ornithorhynchus_anatinus
ENSSFOG00015024211	xrn1	100	61.530	ENSOCUG00000001861	XRN1	100	61.477	Oryctolagus_cuniculus
ENSSFOG00015024211	xrn1	100	67.817	ENSORLG00000013005	xrn1	98	67.819	Oryzias_latipes
ENSSFOG00015024211	xrn1	100	67.525	ENSORLG00020005559	xrn1	100	67.347	Oryzias_latipes_hni
ENSSFOG00015024211	xrn1	100	67.719	ENSORLG00015022523	xrn1	100	67.663	Oryzias_latipes_hsok
ENSSFOG00015024211	xrn1	92	79.310	ENSOMEG00000015397	xrn1	99	79.310	Oryzias_melastigma
ENSSFOG00015024211	xrn1	96	61.141	ENSOGAG00000000170	XRN1	100	59.414	Otolemur_garnettii
ENSSFOG00015024211	xrn1	99	61.340	ENSOARG00000006343	XRN1	99	61.397	Ovis_aries
ENSSFOG00015024211	xrn1	100	61.118	ENSPPAG00000010180	XRN1	100	60.794	Pan_paniscus
ENSSFOG00015024211	xrn1	97	62.671	ENSPPRG00000007125	XRN1	100	61.472	Panthera_pardus
ENSSFOG00015024211	xrn1	96	63.164	ENSPTIG00000021081	XRN1	100	61.472	Panthera_tigris_altaica
ENSSFOG00015024211	xrn1	100	61.233	ENSPTRG00000015482	XRN1	100	60.910	Pan_troglodytes
ENSSFOG00015024211	xrn1	97	63.259	ENSPANG00000010638	XRN1	100	61.396	Papio_anubis
ENSSFOG00015024211	xrn1	100	60.914	ENSPSIG00000018050	XRN1	100	60.971	Pelodiscus_sinensis
ENSSFOG00015024211	xrn1	59	79.463	ENSPMGG00000002648	xrn1	99	80.727	Periophthalmus_magnuspinnatus
ENSSFOG00015024211	xrn1	59	78.696	ENSPEMG00000020610	Xrn1	99	78.378	Peromyscus_maniculatus_bairdii
ENSSFOG00015024211	xrn1	67	51.340	ENSPMAG00000002975	xrn1	99	50.251	Petromyzon_marinus
ENSSFOG00015024211	xrn1	91	74.348	ENSPCIG00000028735	XRN1	99	78.503	Phascolarctos_cinereus
ENSSFOG00015024211	xrn1	92	69.878	ENSPFOG00000013932	xrn1	99	70.656	Poecilia_formosa
ENSSFOG00015024211	xrn1	92	70.103	ENSPLAG00000021653	xrn1	99	70.820	Poecilia_latipinna
ENSSFOG00015024211	xrn1	90	70.997	ENSPMEG00000003076	xrn1	95	71.325	Poecilia_mexicana
ENSSFOG00015024211	xrn1	100	67.703	ENSPREG00000021147	xrn1	100	67.861	Poecilia_reticulata
ENSSFOG00015024211	xrn1	100	61.340	ENSPPYG00000014172	XRN1	100	61.019	Pongo_abelii
ENSSFOG00015024211	xrn1	88	61.361	ENSPCAG00000005638	XRN1	90	67.201	Procavia_capensis
ENSSFOG00015024211	xrn1	98	62.411	ENSPCOG00000013089	XRN1	99	77.901	Propithecus_coquereli
ENSSFOG00015024211	xrn1	88	71.404	ENSPVAG00000016265	XRN1	84	86.416	Pteropus_vampyrus
ENSSFOG00015024211	xrn1	100	66.667	ENSPNYG00000010570	xrn1	99	66.452	Pundamilia_nyererei
ENSSFOG00015024211	xrn1	100	69.708	ENSPNAG00000023531	xrn1	100	69.589	Pygocentrus_nattereri
ENSSFOG00015024211	xrn1	100	60.458	ENSRNOG00000042951	Xrn1	100	60.688	Rattus_norvegicus
ENSSFOG00015024211	xrn1	97	62.448	ENSRBIG00000041227	XRN1	100	60.679	Rhinopithecus_bieti
ENSSFOG00015024211	xrn1	71	52.196	YGL173C	XRN1	75	52.185	Saccharomyces_cerevisiae
ENSSFOG00015024211	xrn1	97	63.019	ENSSBOG00000029561	XRN1	100	60.885	Saimiri_boliviensis_boliviensis
ENSSFOG00015024211	xrn1	98	60.220	ENSSHAG00000016207	XRN1	100	60.278	Sarcophilus_harrisii
ENSSFOG00015024211	xrn1	100	66.570	ENSSMAG00000016534	xrn1	100	74.865	Scophthalmus_maximus
ENSSFOG00015024211	xrn1	90	78.753	ENSSDUG00000010306	xrn1	97	78.753	Seriola_dumerili
ENSSFOG00015024211	xrn1	100	68.042	ENSSLDG00000021543	xrn1	99	76.434	Seriola_lalandi_dorsalis
ENSSFOG00015024211	xrn1	63	69.080	ENSSARG00000007741	-	75	68.769	Sorex_araneus
ENSSFOG00015024211	xrn1	100	61.811	ENSTGUG00000008498	XRN1	100	62.179	Taeniopygia_guttata
ENSSFOG00015024211	xrn1	100	65.141	ENSTRUG00000004895	xrn1	96	81.466	Takifugu_rubripes
ENSSFOG00015024211	xrn1	100	63.689	ENSTNIG00000017615	xrn1	100	63.768	Tetraodon_nigroviridis
ENSSFOG00015024211	xrn1	83	85.753	ENSTBEG00000003256	XRN1	82	71.725	Tupaia_belangeri
ENSSFOG00015024211	xrn1	100	57.985	ENSTTRG00000012914	XRN1	100	58.076	Tursiops_truncatus
ENSSFOG00015024211	xrn1	86	72.095	ENSUAMG00000001608	XRN1	99	74.563	Ursus_americanus
ENSSFOG00015024211	xrn1	97	62.301	ENSUMAG00000013625	XRN1	100	61.083	Ursus_maritimus
ENSSFOG00015024211	xrn1	96	60.601	ENSVPAG00000004690	XRN1	100	58.982	Vicugna_pacos
ENSSFOG00015024211	xrn1	97	62.323	ENSVVUG00000024461	XRN1	99	78.925	Vulpes_vulpes
ENSSFOG00015024211	xrn1	100	61.407	ENSXETG00000000619	xrn1	99	86.162	Xenopus_tropicalis
ENSSFOG00015024211	xrn1	100	67.738	ENSXCOG00000007917	xrn1	100	67.738	Xiphophorus_couchianus
ENSSFOG00015024211	xrn1	93	78.171	ENSXMAG00000018320	xrn1	98	78.336	Xiphophorus_maculatus