EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000000296 (Gene tree)
Gene ID: 100932424
Gene Symbol: POP1
Alias: -
Full Name: POP1 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 34944 bases
Position: chrGL841371.1:357-35300
Accession: 100932424
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000000335	POP1	PF06978.11	1e-38	1	2
ENSSHAP00000000335	POP1	PF06978.11	1e-38	2	2
ENSSHAP00000000334	POP1	PF06978.11	1.8e-38	1	2
ENSSHAP00000000334	POP1	PF06978.11	1.8e-38	2	2
ENSSHAP00000000335	POPLD	PF08170.12	3.8e-27	1	1
ENSSHAP00000000334	POPLD	PF08170.12	4e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000000340	POP1-202	6967	XM_003760279	ENSSHAP00000000335	1024 (aa)	XP_003760327	G3VAY1
ENSSHAT00000000339	POP1-201	7066	-	ENSSHAP00000000334	1057 (aa)	-	G3VAY0

Gene Model

Click here to download ENSSHAG00000000296's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03008	Ribosome biogenesis in eukaryotes	KEGG
shr03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000000296's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000000296	POP1	100	68.925	ENSG00000104356	POP1	100	69.841	Homo_sapiens
ENSSHAG00000000296	POP1	100	46.992	ENSAPOG00000008198	pop1	100	46.992	Acanthochromis_polyacanthus
ENSSHAG00000000296	POP1	99	66.791	ENSAMEG00000000556	POP1	99	66.791	Ailuropoda_melanoleuca
ENSSHAG00000000296	POP1	100	45.669	ENSACIG00000004169	POP1	100	45.669	Amphilophus_citrinellus
ENSSHAG00000000296	POP1	100	46.435	ENSAOCG00000010991	pop1	100	46.610	Amphiprion_ocellaris
ENSSHAG00000000296	POP1	91	45.455	ENSAPEG00000007607	pop1	97	46.266	Amphiprion_percula
ENSSHAG00000000296	POP1	100	46.667	ENSATEG00000024814	POP1	100	46.948	Anabas_testudineus
ENSSHAG00000000296	POP1	92	62.749	ENSAPLG00000014418	POP1	100	62.959	Anas_platyrhynchos
ENSSHAG00000000296	POP1	100	55.620	ENSACAG00000016083	POP1	100	55.620	Anolis_carolinensis
ENSSHAG00000000296	POP1	89	73.178	ENSANAG00000026360	POP1	99	73.178	Aotus_nancymaae
ENSSHAG00000000296	POP1	100	46.629	ENSACLG00000010951	pop1	100	46.635	Astatotilapia_calliptera
ENSSHAG00000000296	POP1	99	45.730	ENSAMXG00000014483	POP1	99	45.730	Astyanax_mexicanus
ENSSHAG00000000296	POP1	100	66.250	ENSBTAG00000012596	POP1	100	66.538	Bos_taurus
ENSSHAG00000000296	POP1	100	68.054	ENSCJAG00000015567	POP1	100	68.054	Callithrix_jacchus
ENSSHAG00000000296	POP1	100	68.354	ENSCAFG00000000469	POP1	100	68.354	Canis_familiaris
ENSSHAG00000000296	POP1	100	68.085	ENSCAFG00020026765	POP1	100	68.085	Canis_lupus_dingo
ENSSHAG00000000296	POP1	100	67.119	ENSCHIG00000017066	POP1	100	67.410	Capra_hircus
ENSSHAG00000000296	POP1	100	68.538	ENSTSYG00000003097	POP1	100	68.538	Carlito_syrichta
ENSSHAG00000000296	POP1	100	63.900	ENSCAPG00000007251	POP1	100	64.189	Cavia_aperea
ENSSHAG00000000296	POP1	100	66.602	ENSCPOG00000002901	POP1	100	66.893	Cavia_porcellus
ENSSHAG00000000296	POP1	100	67.957	ENSCCAG00000018939	POP1	100	67.957	Cebus_capucinus
ENSSHAG00000000296	POP1	100	68.472	ENSCATG00000040916	POP1	100	68.472	Cercocebus_atys
ENSSHAG00000000296	POP1	100	66.473	ENSCLAG00000007208	POP1	97	66.473	Chinchilla_lanigera
ENSSHAG00000000296	POP1	90	70.378	ENSCSAG00000012340	POP1	99	70.378	Chlorocebus_sabaeus
ENSSHAG00000000296	POP1	87	73.319	ENSCHOG00000011432	POP1	96	73.319	Choloepus_hoffmanni
ENSSHAG00000000296	POP1	100	64.626	ENSCPBG00000006373	POP1	100	65.179	Chrysemys_picta_bellii
ENSSHAG00000000296	POP1	82	38.554	ENSCING00000008323	-	87	38.554	Ciona_intestinalis
ENSSHAG00000000296	POP1	100	68.925	ENSCANG00000001647	POP1	100	68.925	Colobus_angolensis_palliatus
ENSSHAG00000000296	POP1	100	62.780	ENSCGRG00001017308	Pop1	100	63.060	Cricetulus_griseus_chok1gshd
ENSSHAG00000000296	POP1	100	58.450	ENSCGRG00000010824	Pop1	100	58.730	Cricetulus_griseus_crigri
ENSSHAG00000000296	POP1	100	46.887	ENSCSEG00000008737	POP1	100	46.887	Cynoglossus_semilaevis
ENSSHAG00000000296	POP1	100	46.445	ENSCVAG00000022248	pop1	100	46.445	Cyprinodon_variegatus
ENSSHAG00000000296	POP1	100	66.449	ENSDNOG00000019974	POP1	100	66.449	Dasypus_novemcinctus
ENSSHAG00000000296	POP1	100	61.054	ENSDORG00000015384	Pop1	100	61.054	Dipodomys_ordii
ENSSHAG00000000296	POP1	77	34.380	FBgn0026702	l(1)G0045	94	34.056	Drosophila_melanogaster
ENSSHAG00000000296	POP1	89	61.498	ENSETEG00000007839	POP1	88	61.498	Echinops_telfairi
ENSSHAG00000000296	POP1	100	68.085	ENSEASG00005003189	POP1	98	68.085	Equus_asinus_asinus
ENSSHAG00000000296	POP1	100	67.988	ENSECAG00000024236	POP1	100	67.988	Equus_caballus
ENSSHAG00000000296	POP1	67	65.714	ENSEEUG00000003050	-	70	65.714	Erinaceus_europaeus
ENSSHAG00000000296	POP1	99	46.863	ENSELUG00000003526	pop1	99	46.863	Esox_lucius
ENSSHAG00000000296	POP1	100	68.665	ENSFCAG00000002168	POP1	100	68.665	Felis_catus
ENSSHAG00000000296	POP1	100	60.425	ENSFALG00000005711	POP1	100	60.425	Ficedula_albicollis
ENSSHAG00000000296	POP1	100	66.699	ENSFDAG00000017068	POP1	100	66.699	Fukomys_damarensis
ENSSHAG00000000296	POP1	100	45.936	ENSFHEG00000019518	pop1	100	45.841	Fundulus_heteroclitus
ENSSHAG00000000296	POP1	93	46.768	ENSGMOG00000000659	POP1	99	46.869	Gadus_morhua
ENSSHAG00000000296	POP1	100	45.332	ENSGAFG00000019770	POP1	100	45.332	Gambusia_affinis
ENSSHAG00000000296	POP1	100	44.873	ENSGACG00000003499	pop1	100	44.873	Gasterosteus_aculeatus
ENSSHAG00000000296	POP1	100	64.597	ENSGAGG00000011737	POP1	98	64.597	Gopherus_agassizii
ENSSHAG00000000296	POP1	100	69.022	ENSGGOG00000003176	POP1	100	69.022	Gorilla_gorilla
ENSSHAG00000000296	POP1	100	46.610	ENSHBUG00000021583	pop1	100	46.610	Haplochromis_burtoni
ENSSHAG00000000296	POP1	100	65.514	ENSHGLG00000006029	POP1	100	65.300	Heterocephalus_glaber_female
ENSSHAG00000000296	POP1	100	65.514	ENSHGLG00100016879	POP1	100	65.300	Heterocephalus_glaber_male
ENSSHAG00000000296	POP1	89	49.251	ENSHCOG00000013888	pop1	96	49.251	Hippocampus_comes
ENSSHAG00000000296	POP1	99	44.891	ENSIPUG00000018336	pop1	99	44.891	Ictalurus_punctatus
ENSSHAG00000000296	POP1	100	67.184	ENSSTOG00000011455	POP1	97	67.184	Ictidomys_tridecemlineatus
ENSSHAG00000000296	POP1	100	63.549	ENSJJAG00000013325	Pop1	100	63.549	Jaculus_jaculus
ENSSHAG00000000296	POP1	100	46.176	ENSKMAG00000001346	POP1	100	46.660	Kryptolebias_marmoratus
ENSSHAG00000000296	POP1	88	46.838	ENSLBEG00000024457	POP1	94	46.779	Labrus_bergylta
ENSSHAG00000000296	POP1	93	57.622	ENSLACG00000012498	POP1	99	57.622	Latimeria_chalumnae
ENSSHAG00000000296	POP1	100	50.670	ENSLOCG00000009817	POP1	100	51.635	Lepisosteus_oculatus
ENSSHAG00000000296	POP1	100	67.887	ENSLAFG00000010770	POP1	100	67.887	Loxodonta_africana
ENSSHAG00000000296	POP1	100	68.635	ENSMFAG00000000347	POP1	100	68.635	Macaca_fascicularis
ENSSHAG00000000296	POP1	100	68.441	ENSMNEG00000036870	POP1	100	68.441	Macaca_nemestrina
ENSSHAG00000000296	POP1	100	68.538	ENSMLEG00000034986	POP1	100	68.538	Mandrillus_leucophaeus
ENSSHAG00000000296	POP1	100	47.304	ENSMAMG00000004040	pop1	100	47.588	Mastacembelus_armatus
ENSSHAG00000000296	POP1	100	46.422	ENSMZEG00005025448	pop1	100	46.422	Maylandia_zebra
ENSSHAG00000000296	POP1	100	59.439	ENSMGAG00000012167	POP1	100	59.831	Meleagris_gallopavo
ENSSHAG00000000296	POP1	100	63.891	ENSMAUG00000017537	Pop1	100	63.891	Mesocricetus_auratus
ENSSHAG00000000296	POP1	100	67.437	ENSMICG00000004361	POP1	100	68.208	Microcebus_murinus
ENSSHAG00000000296	POP1	100	64.393	ENSMOCG00000006356	Pop1	100	64.540	Microtus_ochrogaster
ENSSHAG00000000296	POP1	93	44.943	ENSMMOG00000018242	pop1	98	44.943	Mola_mola
ENSSHAG00000000296	POP1	100	85.423	ENSMODG00000006561	POP1	100	85.423	Monodelphis_domestica
ENSSHAG00000000296	POP1	100	47.378	ENSMALG00000012621	POP1	100	47.429	Monopterus_albus
ENSSHAG00000000296	POP1	100	63.358	MGP_CAROLIEiJ_G0019726	Pop1	100	64.007	Mus_caroli
ENSSHAG00000000296	POP1	100	63.007	ENSMUSG00000022325	Pop1	100	63.653	Mus_musculus
ENSSHAG00000000296	POP1	100	62.931	MGP_PahariEiJ_G0019735	Pop1	100	62.931	Mus_pahari
ENSSHAG00000000296	POP1	100	62.696	MGP_SPRETEiJ_G0020622	Pop1	100	63.343	Mus_spretus
ENSSHAG00000000296	POP1	100	67.627	ENSMPUG00000015250	POP1	100	67.627	Mustela_putorius_furo
ENSSHAG00000000296	POP1	100	64.327	ENSMLUG00000010204	POP1	100	64.327	Myotis_lucifugus
ENSSHAG00000000296	POP1	100	65.858	ENSNGAG00000001582	Pop1	100	65.988	Nannospalax_galili
ENSSHAG00000000296	POP1	88	46.875	ENSNBRG00000002356	pop1	94	46.815	Neolamprologus_brichardi
ENSSHAG00000000296	POP1	100	68.538	ENSNLEG00000002541	POP1	100	68.538	Nomascus_leucogenys
ENSSHAG00000000296	POP1	95	75.996	ENSMEUG00000003118	POP1	100	75.996	Notamacropus_eugenii
ENSSHAG00000000296	POP1	100	66.377	ENSOPRG00000007667	POP1	100	66.377	Ochotona_princeps
ENSSHAG00000000296	POP1	100	66.990	ENSODEG00000003984	POP1	100	66.990	Octodon_degus
ENSSHAG00000000296	POP1	100	47.818	ENSONIG00000016445	pop1	100	47.801	Oreochromis_niloticus
ENSSHAG00000000296	POP1	61	72.093	ENSOANG00000001278	-	94	73.964	Ornithorhynchus_anatinus
ENSSHAG00000000296	POP1	100	66.795	ENSOCUG00000017400	POP1	100	66.795	Oryctolagus_cuniculus
ENSSHAG00000000296	POP1	100	46.583	ENSORLG00000002839	pop1	100	46.872	Oryzias_latipes
ENSSHAG00000000296	POP1	89	48.077	ENSORLG00020022450	POP1	96	48.559	Oryzias_latipes_hni
ENSSHAG00000000296	POP1	100	46.872	ENSORLG00015012746	POP1	100	47.353	Oryzias_latipes_hsok
ENSSHAG00000000296	POP1	100	48.792	ENSOMEG00000006915	pop1	99	49.082	Oryzias_melastigma
ENSSHAG00000000296	POP1	100	68.213	ENSOGAG00000001466	POP1	100	68.411	Otolemur_garnettii
ENSSHAG00000000296	POP1	100	69.022	ENSPPAG00000018410	POP1	100	69.022	Pan_paniscus
ENSSHAG00000000296	POP1	100	68.046	ENSPPRG00000005002	POP1	100	68.046	Panthera_pardus
ENSSHAG00000000296	POP1	100	68.335	ENSPTIG00000016527	POP1	100	68.335	Panthera_tigris_altaica
ENSSHAG00000000296	POP1	100	68.925	ENSPTRG00000020458	POP1	100	68.925	Pan_troglodytes
ENSSHAG00000000296	POP1	100	68.538	ENSPANG00000009704	POP1	100	68.538	Papio_anubis
ENSSHAG00000000296	POP1	99	48.757	ENSPKIG00000016325	POP1	99	48.757	Paramormyrops_kingsleyae
ENSSHAG00000000296	POP1	100	62.675	ENSPSIG00000012343	POP1	100	62.741	Pelodiscus_sinensis
ENSSHAG00000000296	POP1	90	48.000	ENSPMGG00000022253	POP1	95	49.001	Periophthalmus_magnuspinnatus
ENSSHAG00000000296	POP1	99	64.419	ENSPEMG00000023633	Pop1	100	64.419	Peromyscus_maniculatus_bairdii
ENSSHAG00000000296	POP1	89	43.414	ENSPMAG00000003209	POP1	100	43.203	Petromyzon_marinus
ENSSHAG00000000296	POP1	100	86.200	ENSPCIG00000012216	POP1	100	86.589	Phascolarctos_cinereus
ENSSHAG00000000296	POP1	100	45.857	ENSPFOG00000012490	POP1	100	45.857	Poecilia_formosa
ENSSHAG00000000296	POP1	100	45.489	ENSPLAG00000004646	POP1	100	45.489	Poecilia_latipinna
ENSSHAG00000000296	POP1	100	45.777	ENSPMEG00000019592	POP1	100	45.777	Poecilia_mexicana
ENSSHAG00000000296	POP1	100	45.969	ENSPREG00000020951	POP1	100	45.969	Poecilia_reticulata
ENSSHAG00000000296	POP1	100	69.022	ENSPPYG00000018777	POP1	100	69.022	Pongo_abelii
ENSSHAG00000000296	POP1	100	63.230	ENSPCAG00000016662	POP1	100	63.230	Procavia_capensis
ENSSHAG00000000296	POP1	100	68.112	ENSPCOG00000019420	POP1	100	68.882	Propithecus_coquereli
ENSSHAG00000000296	POP1	100	66.441	ENSPVAG00000014468	POP1	100	66.441	Pteropus_vampyrus
ENSSHAG00000000296	POP1	88	47.840	ENSPNYG00000004476	pop1	95	48.077	Pundamilia_nyererei
ENSSHAG00000000296	POP1	99	45.046	ENSPNAG00000000265	pop1	99	45.046	Pygocentrus_nattereri
ENSSHAG00000000296	POP1	100	63.747	ENSRNOG00000005243	Pop1	100	63.747	Rattus_norvegicus
ENSSHAG00000000296	POP1	100	69.313	ENSRBIG00000007996	POP1	100	69.313	Rhinopithecus_bieti
ENSSHAG00000000296	POP1	100	69.313	ENSRROG00000012334	POP1	100	69.313	Rhinopithecus_roxellana
ENSSHAG00000000296	POP1	99	68.725	ENSSBOG00000020830	POP1	100	68.725	Saimiri_boliviensis_boliviensis
ENSSHAG00000000296	POP1	100	47.893	ENSSFOG00015007429	pop1	99	47.893	Scleropages_formosus
ENSSHAG00000000296	POP1	85	53.752	ENSSMAG00000010467	POP1	98	48.240	Scophthalmus_maximus
ENSSHAG00000000296	POP1	100	47.037	ENSSDUG00000007817	POP1	100	47.686	Seriola_dumerili
ENSSHAG00000000296	POP1	100	47.131	ENSSLDG00000012565	POP1	100	47.842	Seriola_lalandi_dorsalis
ENSSHAG00000000296	POP1	100	58.863	ENSSPUG00000003550	-	100	59.152	Sphenodon_punctatus
ENSSHAG00000000296	POP1	100	45.455	ENSSPAG00000014955	pop1	100	45.841	Stegastes_partitus
ENSSHAG00000000296	POP1	100	66.795	ENSSSCG00000006078	POP1	100	66.795	Sus_scrofa
ENSSHAG00000000296	POP1	91	56.705	ENSTGUG00000012011	-	100	56.705	Taeniopygia_guttata
ENSSHAG00000000296	POP1	89	48.000	ENSTRUG00000010856	pop1	92	48.000	Takifugu_rubripes
ENSSHAG00000000296	POP1	91	48.438	ENSTNIG00000013297	pop1	98	48.542	Tetraodon_nigroviridis
ENSSHAG00000000296	POP1	95	64.736	ENSTBEG00000014214	POP1	99	64.736	Tupaia_belangeri
ENSSHAG00000000296	POP1	100	64.660	ENSTTRG00000016071	POP1	100	64.951	Tursiops_truncatus
ENSSHAG00000000296	POP1	99	65.524	ENSUAMG00000017309	POP1	99	65.524	Ursus_americanus
ENSSHAG00000000296	POP1	99	66.859	ENSUMAG00000016952	POP1	99	72.222	Ursus_maritimus
ENSSHAG00000000296	POP1	83	72.760	ENSVPAG00000008278	POP1	82	72.989	Vicugna_pacos
ENSSHAG00000000296	POP1	100	68.182	ENSVVUG00000010994	POP1	100	68.182	Vulpes_vulpes
ENSSHAG00000000296	POP1	100	41.053	ENSXCOG00000017043	POP1	100	41.053	Xiphophorus_couchianus
ENSSHAG00000000296	POP1	100	45.350	ENSXMAG00000002472	POP1	100	45.350	Xiphophorus_maculatus