EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000000511 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: polyadenylate-binding protein 1-like
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 2082 bases
Position: chrGL867926.1:1443-3524
Accession: 100924794
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000000572	PABP	PF00658.18	4.3e-24	1	1
ENSSHAP00000000572	RRM_5	PF13893.6	1.2e-08	1	1
ENSSHAP00000000572	RRM_1	PF00076.22	5.7e-87	1	4
ENSSHAP00000000572	RRM_1	PF00076.22	5.7e-87	2	4
ENSSHAP00000000572	RRM_1	PF00076.22	5.7e-87	3	4
ENSSHAP00000000572	RRM_1	PF00076.22	5.7e-87	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000000581	-	1857	XM_012553589	ENSSHAP00000000572	619 (aa)	XP_012409043	G3VBL8

Gene Model

Click here to download ENSSHAG00000000511's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000000511's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000000511	-	53	38.235	ENSSHAG00000006756	ELAVL2	89	31.788
ENSSHAG00000000511	-	99	61.951	ENSSHAG00000018139	PABPC4	97	62.276
ENSSHAG00000000511	-	73	30.435	ENSSHAG00000002411	RBMS3	70	30.435
ENSSHAG00000000511	-	100	65.434	ENSSHAG00000003431	-	97	65.595
ENSSHAG00000000511	-	59	30.000	ENSSHAG00000008108	TRNAU1AP	69	31.156
ENSSHAG00000000511	-	98	54.527	ENSSHAG00000011446	PABPC1L	100	54.527
ENSSHAG00000000511	-	59	31.126	ENSSHAG00000013832	-	90	34.940
ENSSHAG00000000511	-	99	60.924	ENSSHAG00000011267	PABPC1	97	60.924

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000000511	-	59	69.388	ENSG00000186288	PABPC1L2A	98	69.388	Homo_sapiens
ENSSHAG00000000511	-	59	69.388	ENSG00000184388	PABPC1L2B	98	69.388	Homo_sapiens
ENSSHAG00000000511	-	100	63.942	ENSAPOG00000015105	pabpc1a	98	63.942	Acanthochromis_polyacanthus
ENSSHAG00000000511	-	100	63.826	ENSAPOG00000017776	pabpc1b	98	63.826	Acanthochromis_polyacanthus
ENSSHAG00000000511	-	59	69.388	ENSAMEG00000019441	-	98	69.388	Ailuropoda_melanoleuca
ENSSHAG00000000511	-	100	64.000	ENSACIG00000004685	pabpc1a	98	64.000	Amphilophus_citrinellus
ENSSHAG00000000511	-	100	61.920	ENSACIG00000018366	pabpc1b	98	61.920	Amphilophus_citrinellus
ENSSHAG00000000511	-	100	63.505	ENSAOCG00000019839	pabpc1b	98	63.505	Amphiprion_ocellaris
ENSSHAG00000000511	-	100	63.622	ENSAOCG00000011656	pabpc1a	98	63.942	Amphiprion_ocellaris
ENSSHAG00000000511	-	100	63.622	ENSAPEG00000006963	pabpc1a	98	63.942	Amphiprion_percula
ENSSHAG00000000511	-	100	63.505	ENSAPEG00000010435	pabpc1b	98	63.505	Amphiprion_percula
ENSSHAG00000000511	-	100	64.000	ENSATEG00000024852	pabpc1a	98	64.320	Anabas_testudineus
ENSSHAG00000000511	-	100	62.862	ENSATEG00000012917	pabpc1b	98	62.862	Anabas_testudineus
ENSSHAG00000000511	-	59	69.388	ENSANAG00000019431	-	98	69.388	Aotus_nancymaae
ENSSHAG00000000511	-	59	69.388	ENSANAG00000019429	-	98	69.388	Aotus_nancymaae
ENSSHAG00000000511	-	100	68.282	ENSACLG00000009399	pabpc1a	97	68.282	Astatotilapia_calliptera
ENSSHAG00000000511	-	100	63.344	ENSACLG00000014335	pabpc1b	98	63.344	Astatotilapia_calliptera
ENSSHAG00000000511	-	100	64.090	ENSAMXG00000008599	pabpc1b	98	64.090	Astyanax_mexicanus
ENSSHAG00000000511	-	60	68.657	ENSBTAG00000052491	-	97	68.657	Bos_taurus
ENSSHAG00000000511	-	60	68.159	ENSBTAG00000050902	-	96	68.159	Bos_taurus
ENSSHAG00000000511	-	59	69.388	ENSCJAG00000041326	-	98	69.388	Callithrix_jacchus
ENSSHAG00000000511	-	61	67.980	ENSCAFG00020002052	-	97	67.980	Canis_lupus_dingo
ENSSHAG00000000511	-	59	69.388	ENSCHIG00000011138	-	98	69.388	Capra_hircus
ENSSHAG00000000511	-	59	69.388	ENSCHIG00000006283	-	98	69.388	Capra_hircus
ENSSHAG00000000511	-	59	69.388	ENSTSYG00000001775	-	98	69.388	Carlito_syrichta
ENSSHAG00000000511	-	59	69.388	ENSCPOG00000009525	-	98	69.388	Cavia_porcellus
ENSSHAG00000000511	-	59	69.388	ENSCCAG00000031524	-	98	69.388	Cebus_capucinus
ENSSHAG00000000511	-	59	69.388	ENSCATG00000043125	-	98	69.388	Cercocebus_atys
ENSSHAG00000000511	-	59	69.388	ENSCATG00000042826	-	98	69.388	Cercocebus_atys
ENSSHAG00000000511	-	59	69.388	ENSCLAG00000017412	-	98	69.388	Chinchilla_lanigera
ENSSHAG00000000511	-	59	69.388	ENSCLAG00000017409	-	98	69.388	Chinchilla_lanigera
ENSSHAG00000000511	-	59	69.388	ENSCSAG00000000102	-	98	69.388	Chlorocebus_sabaeus
ENSSHAG00000000511	-	59	70.718	ENSCGRG00001023387	-	96	68.041	Cricetulus_griseus_chok1gshd
ENSSHAG00000000511	-	100	63.782	ENSCSEG00000013324	pabpc1a	98	64.103	Cynoglossus_semilaevis
ENSSHAG00000000511	-	100	62.963	ENSCSEG00000015241	-	98	62.963	Cynoglossus_semilaevis
ENSSHAG00000000511	-	100	63.622	ENSCVAG00000021872	pabpc1a	98	63.622	Cyprinodon_variegatus
ENSSHAG00000000511	-	100	62.440	ENSCVAG00000005489	pabpc1b	98	62.600	Cyprinodon_variegatus
ENSSHAG00000000511	-	100	63.929	ENSDARG00000021140	pabpc1b	99	72.662	Danio_rerio
ENSSHAG00000000511	-	100	64.469	ENSDARG00000017219	pabpc1a	98	64.469	Danio_rerio
ENSSHAG00000000511	-	59	70.370	ENSDNOG00000030926	-	98	68.878	Dasypus_novemcinctus
ENSSHAG00000000511	-	59	67.857	ENSDORG00000011362	-	98	67.857	Dipodomys_ordii
ENSSHAG00000000511	-	60	68.159	ENSEASG00005010399	-	96	68.159	Equus_asinus_asinus
ENSSHAG00000000511	-	60	68.159	ENSECAG00000002620	-	96	68.159	Equus_caballus
ENSSHAG00000000511	-	59	69.898	ENSEEUG00000008203	-	98	69.898	Erinaceus_europaeus
ENSSHAG00000000511	-	60	49.130	ENSELUG00000005389	-	96	49.130	Esox_lucius
ENSSHAG00000000511	-	100	64.593	ENSELUG00000015062	-	98	64.593	Esox_lucius
ENSSHAG00000000511	-	100	64.366	ENSELUG00000003614	pabpc1a	98	64.366	Esox_lucius
ENSSHAG00000000511	-	59	69.388	ENSFCAG00000039701	-	98	69.388	Felis_catus
ENSSHAG00000000511	-	59	69.388	ENSFDAG00000005484	-	98	69.388	Fukomys_damarensis
ENSSHAG00000000511	-	100	63.666	ENSFHEG00000008186	pabpc1b	98	63.987	Fundulus_heteroclitus
ENSSHAG00000000511	-	100	63.462	ENSFHEG00000018979	pabpc1a	98	63.782	Fundulus_heteroclitus
ENSSHAG00000000511	-	100	63.133	ENSGMOG00000013448	pabpc1a	98	63.608	Gadus_morhua
ENSSHAG00000000511	-	100	60.413	ENSGMOG00000002448	-	98	60.413	Gadus_morhua
ENSSHAG00000000511	-	100	63.782	ENSGAFG00000019750	pabpc1a	98	63.782	Gambusia_affinis
ENSSHAG00000000511	-	100	63.666	ENSGAFG00000010193	pabpc1b	98	63.987	Gambusia_affinis
ENSSHAG00000000511	-	99	62.141	ENSGACG00000003771	pabpc1b	97	62.679	Gasterosteus_aculeatus
ENSSHAG00000000511	-	100	63.782	ENSGACG00000003572	pabpc1a	98	63.782	Gasterosteus_aculeatus
ENSSHAG00000000511	-	59	69.388	ENSGGOG00000043933	-	98	69.388	Gorilla_gorilla
ENSSHAG00000000511	-	59	69.388	ENSGGOG00000038606	-	98	69.388	Gorilla_gorilla
ENSSHAG00000000511	-	100	63.344	ENSHBUG00000002075	pabpc1b	98	63.344	Haplochromis_burtoni
ENSSHAG00000000511	-	100	68.282	ENSHBUG00000020487	pabpc1a	97	68.282	Haplochromis_burtoni
ENSSHAG00000000511	-	59	68.878	ENSHGLG00000019668	-	98	68.878	Heterocephalus_glaber_female
ENSSHAG00000000511	-	59	68.878	ENSHGLG00000019762	-	98	68.878	Heterocephalus_glaber_female
ENSSHAG00000000511	-	59	68.878	ENSHGLG00100020854	-	98	68.878	Heterocephalus_glaber_male
ENSSHAG00000000511	-	100	63.782	ENSHCOG00000013502	pabpc1a	98	64.103	Hippocampus_comes
ENSSHAG00000000511	-	100	63.991	ENSHCOG00000003175	pabpc1b	99	63.991	Hippocampus_comes
ENSSHAG00000000511	-	64	56.599	ENSIPUG00000021244	-	56	56.599	Ictalurus_punctatus
ENSSHAG00000000511	-	100	63.871	ENSIPUG00000010791	-	97	63.871	Ictalurus_punctatus
ENSSHAG00000000511	-	63	47.761	ENSIPUG00000018724	-	68	47.761	Ictalurus_punctatus
ENSSHAG00000000511	-	99	65.000	ENSIPUG00000008848	pabpc1a	98	65.000	Ictalurus_punctatus
ENSSHAG00000000511	-	59	68.878	ENSSTOG00000026028	-	98	68.878	Ictidomys_tridecemlineatus
ENSSHAG00000000511	-	59	68.878	ENSSTOG00000022096	-	98	68.878	Ictidomys_tridecemlineatus
ENSSHAG00000000511	-	59	67.857	ENSJJAG00000007037	-	98	67.857	Jaculus_jaculus
ENSSHAG00000000511	-	100	63.344	ENSKMAG00000008049	pabpc1b	98	63.505	Kryptolebias_marmoratus
ENSSHAG00000000511	-	100	64.103	ENSKMAG00000000605	pabpc1a	98	64.103	Kryptolebias_marmoratus
ENSSHAG00000000511	-	100	63.462	ENSLBEG00000026845	pabpc1b	98	63.462	Labrus_bergylta
ENSSHAG00000000511	-	100	63.942	ENSLBEG00000024002	-	98	63.942	Labrus_bergylta
ENSSHAG00000000511	-	59	68.718	ENSLAFG00000023096	-	98	68.718	Loxodonta_africana
ENSSHAG00000000511	-	59	69.036	ENSMFAG00000028878	-	98	69.036	Macaca_fascicularis
ENSSHAG00000000511	-	59	69.388	ENSMMUG00000009740	-	98	69.388	Macaca_mulatta
ENSSHAG00000000511	-	59	69.388	ENSMMUG00000037681	-	98	69.388	Macaca_mulatta
ENSSHAG00000000511	-	59	69.388	ENSMMUG00000039929	-	98	69.388	Macaca_mulatta
ENSSHAG00000000511	-	59	69.388	ENSMNEG00000037732	-	98	69.388	Macaca_nemestrina
ENSSHAG00000000511	-	59	69.388	ENSMLEG00000027495	-	98	69.388	Mandrillus_leucophaeus
ENSSHAG00000000511	-	100	72.289	ENSMAMG00000004502	-	97	72.289	Mastacembelus_armatus
ENSSHAG00000000511	-	100	63.987	ENSMAMG00000014610	pabpc1b	98	64.205	Mastacembelus_armatus
ENSSHAG00000000511	-	100	68.282	ENSMZEG00005025416	pabpc1a	97	68.282	Maylandia_zebra
ENSSHAG00000000511	-	100	63.344	ENSMZEG00005026745	pabpc1b	98	63.344	Maylandia_zebra
ENSSHAG00000000511	-	59	69.388	ENSMICG00000047642	-	98	69.388	Microcebus_murinus
ENSSHAG00000000511	-	100	61.514	ENSMMOG00000018009	pabpc1b	97	61.514	Mola_mola
ENSSHAG00000000511	-	100	68.502	ENSMMOG00000018044	pabpc1a	97	68.502	Mola_mola
ENSSHAG00000000511	-	100	64.620	ENSMODG00000013156	-	98	64.620	Monodelphis_domestica
ENSSHAG00000000511	-	99	65.539	ENSMODG00000015024	-	97	65.539	Monodelphis_domestica
ENSSHAG00000000511	-	100	63.942	ENSMALG00000013020	-	98	64.103	Monopterus_albus
ENSSHAG00000000511	-	100	62.480	ENSMALG00000006066	pabpc1b	97	62.641	Monopterus_albus
ENSSHAG00000000511	-	59	70.492	ENSNGAG00000012688	-	98	67.857	Nannospalax_galili
ENSSHAG00000000511	-	100	63.344	ENSNBRG00000013737	pabpc1b	98	63.344	Neolamprologus_brichardi
ENSSHAG00000000511	-	100	68.282	ENSNBRG00000003068	-	97	68.282	Neolamprologus_brichardi
ENSSHAG00000000511	-	59	69.388	ENSNLEG00000018128	-	98	69.388	Nomascus_leucogenys
ENSSHAG00000000511	-	59	69.388	ENSODEG00000018540	-	98	69.388	Octodon_degus
ENSSHAG00000000511	-	100	63.622	ENSONIG00000006871	-	98	63.622	Oreochromis_niloticus
ENSSHAG00000000511	-	100	63.183	ENSONIG00000002717	pabpc1b	98	63.183	Oreochromis_niloticus
ENSSHAG00000000511	-	59	69.388	ENSOCUG00000002565	-	98	69.388	Oryctolagus_cuniculus
ENSSHAG00000000511	-	100	72.967	ENSORLG00000002691	pabpc1a	97	72.967	Oryzias_latipes
ENSSHAG00000000511	-	99	62.641	ENSORLG00000003008	-	97	62.641	Oryzias_latipes
ENSSHAG00000000511	-	99	62.480	ENSORLG00020022259	-	97	62.480	Oryzias_latipes_hni
ENSSHAG00000000511	-	100	63.782	ENSORLG00020022398	pabpc1a	98	64.263	Oryzias_latipes_hni
ENSSHAG00000000511	-	99	62.641	ENSORLG00015010932	-	97	62.641	Oryzias_latipes_hsok
ENSSHAG00000000511	-	100	63.942	ENSORLG00015013633	pabpc1	98	64.423	Oryzias_latipes_hsok
ENSSHAG00000000511	-	100	63.942	ENSOMEG00000020219	pabpc1a	98	64.423	Oryzias_melastigma
ENSSHAG00000000511	-	100	63.297	ENSOMEG00000013627	pabpc1b	97	63.297	Oryzias_melastigma
ENSSHAG00000000511	-	59	69.388	ENSOGAG00000026047	-	98	69.388	Otolemur_garnettii
ENSSHAG00000000511	-	59	69.388	ENSOGAG00000029513	-	98	69.388	Otolemur_garnettii
ENSSHAG00000000511	-	59	69.388	ENSOARG00000005943	-	98	69.388	Ovis_aries
ENSSHAG00000000511	-	59	69.388	ENSPPAG00000012920	-	98	69.388	Pan_paniscus
ENSSHAG00000000511	-	59	69.388	ENSPPRG00000011809	-	98	69.388	Panthera_pardus
ENSSHAG00000000511	-	59	69.388	ENSPPRG00000011804	-	98	69.388	Panthera_pardus
ENSSHAG00000000511	-	59	69.388	ENSPTRG00000028252	-	98	69.388	Pan_troglodytes
ENSSHAG00000000511	-	59	69.388	ENSPANG00000011549	-	98	69.388	Papio_anubis
ENSSHAG00000000511	-	100	64.090	ENSPKIG00000005676	pabpc1b	98	64.090	Paramormyrops_kingsleyae
ENSSHAG00000000511	-	71	69.910	ENSPMGG00000023134	-	96	69.910	Periophthalmus_magnuspinnatus
ENSSHAG00000000511	-	79	67.280	ENSPMGG00000022487	pabpc1a	99	67.280	Periophthalmus_magnuspinnatus
ENSSHAG00000000511	-	99	63.622	ENSPCIG00000016995	-	54	63.622	Phascolarctos_cinereus
ENSSHAG00000000511	-	100	62.835	ENSPFOG00000010815	pabpc1a	98	62.893	Poecilia_formosa
ENSSHAG00000000511	-	100	63.344	ENSPFOG00000005917	pabpc1b	98	63.666	Poecilia_formosa
ENSSHAG00000000511	-	100	63.666	ENSPLAG00000001388	pabpc1b	98	63.987	Poecilia_latipinna
ENSSHAG00000000511	-	100	63.782	ENSPLAG00000004114	pabpc1a	98	64.103	Poecilia_latipinna
ENSSHAG00000000511	-	100	63.344	ENSPMEG00000014399	pabpc1b	98	63.666	Poecilia_mexicana
ENSSHAG00000000511	-	100	63.782	ENSPMEG00000001334	pabpc1a	98	64.103	Poecilia_mexicana
ENSSHAG00000000511	-	100	68.502	ENSPREG00000019595	pabpc1a	96	76.147	Poecilia_reticulata
ENSSHAG00000000511	-	100	63.666	ENSPREG00000010911	pabpc1b	98	63.987	Poecilia_reticulata
ENSSHAG00000000511	-	59	69.388	ENSPPYG00000020468	-	98	69.388	Pongo_abelii
ENSSHAG00000000511	-	59	69.388	ENSPCAG00000005308	-	98	69.388	Procavia_capensis
ENSSHAG00000000511	-	59	68.878	ENSPCOG00000026349	-	98	68.878	Propithecus_coquereli
ENSSHAG00000000511	-	59	69.231	ENSPVAG00000016117	-	98	69.231	Pteropus_vampyrus
ENSSHAG00000000511	-	100	63.344	ENSPNYG00000012578	pabpc1b	98	63.344	Pundamilia_nyererei
ENSSHAG00000000511	-	100	63.622	ENSPNYG00000005192	pabpc1a	98	63.622	Pundamilia_nyererei
ENSSHAG00000000511	-	100	65.217	ENSPNAG00000028408	pabpc1a	98	65.217	Pygocentrus_nattereri
ENSSHAG00000000511	-	100	64.090	ENSPNAG00000024626	pabpc1b	97	64.090	Pygocentrus_nattereri
ENSSHAG00000000511	-	59	69.388	ENSRBIG00000027173	-	98	69.388	Rhinopithecus_bieti
ENSSHAG00000000511	-	82	65.600	ENSRBIG00000028738	-	88	65.600	Rhinopithecus_bieti
ENSSHAG00000000511	-	59	69.388	ENSRROG00000017404	-	98	69.388	Rhinopithecus_roxellana
ENSSHAG00000000511	-	62	67.630	ENSSFOG00015019668	-	73	67.630	Scleropages_formosus
ENSSHAG00000000511	-	100	63.929	ENSSFOG00015006662	pabpc1a	98	64.090	Scleropages_formosus
ENSSHAG00000000511	-	100	64.895	ENSSFOG00015002752	-	98	64.895	Scleropages_formosus
ENSSHAG00000000511	-	100	63.462	ENSSMAG00000010803	pabpc1a	98	63.462	Scophthalmus_maximus
ENSSHAG00000000511	-	100	62.862	ENSSMAG00000006869	pabpc1b	98	62.862	Scophthalmus_maximus
ENSSHAG00000000511	-	100	63.606	ENSSDUG00000011965	pabpc1b	98	62.440	Seriola_dumerili
ENSSHAG00000000511	-	100	63.782	ENSSDUG00000006675	pabpc1a	98	63.782	Seriola_dumerili
ENSSHAG00000000511	-	100	63.782	ENSSLDG00000011661	pabpc1a	98	63.782	Seriola_lalandi_dorsalis
ENSSHAG00000000511	-	100	63.317	ENSSLDG00000014156	pabpc1b	98	63.317	Seriola_lalandi_dorsalis
ENSSHAG00000000511	-	100	63.622	ENSSPAG00000014453	-	98	63.942	Stegastes_partitus
ENSSHAG00000000511	-	100	63.782	ENSSPAG00000019265	pabpc1b	98	63.782	Stegastes_partitus
ENSSHAG00000000511	-	59	69.388	ENSSSCG00000032167	-	98	69.388	Sus_scrofa
ENSSHAG00000000511	-	59	69.388	ENSSSCG00000036336	-	98	69.388	Sus_scrofa
ENSSHAG00000000511	-	100	62.540	ENSTRUG00000003767	-	98	62.540	Takifugu_rubripes
ENSSHAG00000000511	-	100	64.537	ENSTRUG00000011577	-	98	64.480	Takifugu_rubripes
ENSSHAG00000000511	-	100	62.717	ENSTNIG00000013307	pabpc1a	98	62.658	Tetraodon_nigroviridis
ENSSHAG00000000511	-	100	62.520	ENSTNIG00000009153	pabpc1b	98	62.520	Tetraodon_nigroviridis
ENSSHAG00000000511	-	59	69.388	ENSTTRG00000013181	-	98	69.388	Tursiops_truncatus
ENSSHAG00000000511	-	59	69.388	ENSUAMG00000008089	-	98	69.388	Ursus_americanus
ENSSHAG00000000511	-	99	49.438	ENSUMAG00000023926	-	91	60.322	Ursus_maritimus
ENSSHAG00000000511	-	59	69.388	ENSUMAG00000003364	-	98	69.388	Ursus_maritimus
ENSSHAG00000000511	-	60	67.662	ENSVVUG00000015892	-	98	67.662	Vulpes_vulpes
ENSSHAG00000000511	-	99	38.551	ENSXETG00000015439	-	97	38.337	Xenopus_tropicalis
ENSSHAG00000000511	-	100	62.379	ENSXCOG00000019901	pabpc1b	98	62.379	Xiphophorus_couchianus
ENSSHAG00000000511	-	100	63.387	ENSXCOG00000017066	pabpc1a	98	63.548	Xiphophorus_couchianus
ENSSHAG00000000511	-	100	63.505	ENSXMAG00000003753	pabpc1b	89	76.164	Xiphophorus_maculatus
ENSSHAG00000000511	-	100	63.622	ENSXMAG00000002555	pabpc1a	98	63.942	Xiphophorus_maculatus